Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  164  of  322  ( 38559 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53794906--53794943
12
3.1
12
82
17
51
81
0
2
15
0.80
53795250--53795286
3
12.3
3
100
0
74
32
0
0
67
0.91
53795405--53795433
12
2.4
12
100
0
58
34
6
0
58
1.25
53795483--53795805
3
107.0
3
68
15
98
28
7
2
61
1.35
53795527--53795580
20
2.7
20
88
2
81
25
9
1
62
1.35
53795611--53795675
34
1.9
34
87
6
96
30
6
1
61
1.29
53798711--53798802
48
1.9
48
95
0
166
38
9
18
33
1.84
53800692--53800887
91
2.2
91
89
3
297
29
16
22
31
1.96
53800787--53801387
132
4.5
132
89
2
830
26
16
24
33
1.96
53801265--53801505
130
1.9
130
83
1
322
27
17
22
31
1.97
53801615--53801686
7
10.0
7
81
4
81
16
2
38
41
1.63
53801627--53801681
21
2.6
21
91
0
92
16
3
38
41
1.66
53801839--53801964
7
17.4
7
69
11
76
16
0
34
47
1.53
53801851--53801964
15
7.9
14
77
12
79
16
0
35
47
1.53
53806094--53806430
76
4.5
75
85
6
434
32
21
15
30
1.94
53806478--53806630
74
2.1
74
93
0
261
31
20
15
33
1.93
53814691--53814726
16
2.2
16
90
0
54
63
0
0
36
0.94
53817545--53817638
41
2.3
41
87
1
127
36
15
15
31
1.90
53827062--53827113
19
2.7
19
69
3
50
55
3
0
40
1.18
53827078--53827102
9
2.8
9
100
0
50
72
8
0
20
1.10
53833324--53833445
25
4.9
25
72
16
74
35
18
27
18
1.94
53833335--53833445
50
2.2
50
79
9
120
34
18
28
18
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53833337--53833452
25
4.7
24
75
16
85
34
18
30
17
1.93
53834374--53834408
16
2.2
16
95
5
63
60
2
5
31
1.35
53834523--53834582
23
2.9
20
70
15
59
56
5
6
31
1.47
53834560--53834630
25
3.0
23
78
9
81
57
5
5
30
1.45
53834646--53834777
25
5.6
25
73
12
91
56
3
6
34
1.40
53834639--53834760
50
2.4
50
77
5
131
56
3
5
34
1.39
53835265--53835380
30
3.9
30
97
0
214
17
6
50
26
1.69
53836020--53836314
88
3.4
88
78
8
309
35
20
14
29
1.92
53836002--53836317
175
1.8
174
82
6
415
34
20
15
29
1.93
53836365--53836490
64
2.0
65
90
1
200
34
20
15
28
1.94
53836295--53836568
141
2.0
137
86
5
388
35
20
15
28
1.93
53836429--53836784
71
4.7
72
77
16
303
35
18
16
30
1.93
53836328--53836870
155
3.6
151
78
13
453
35
18
16
29
1.93
53836720--53836936
88
2.5
88
97
0
407
35
16
17
31
1.91
53836968--53837427
77
5.9
77
79
12
408
33
19
16
30
1.94
53837136--53837427
160
1.8
160
85
3
417
32
21
16
29
1.95
53838234--53838344
44
2.5
44
89
4
163
17
24
14
44
1.86
53838258--53838348
44
2.1
44
97
0
173
17
23
15
43
1.87
53845827--53845861
16
2.3
15
90
5
52
62
2
2
31
1.24
53845976--53846035
23
2.9
20
70
15
59
56
5
6
31
1.47
53846013--53846083
25
3.0
23
78
9
81
57
5
5
30
1.45
53846102--53846233
23
5.6
24
75
8
110
55
3
6
35
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53846182--53846233
24
2.2
23
83
10
61
59
0
3
36
1.16
53851697--53851731
7
4.9
7
96
3
61
57
28
0
14
1.38
53856822--53856936
23
4.9
23
80
8
117
25
21
19
33
1.97
53856814--53856926
46
2.5
45
86
5
147
24
21
20
33
1.97
53857797--53857874
40
2.0
40
100
0
156
32
14
30
23
1.94
53858581--53858626
11
3.8
11
88
11
56
26
10
2
60
1.41
53858680--53858723
15
3.0
15
90
3
63
31
11
0
56
1.35
53860451--53860490
21
1.9
21
89
0
62
57
2
2
37
1.26
53863149--53863194
25
1.9
23
86
8
65
28
0
8
63
1.24
53866951--53866997
23
2.0
23
91
0
76
31
14
17
36
1.90
53871039--53871162
23
5.3
22
77
14
101
26
21
18
33
1.97
53871039--53871162
46
2.6
46
80
14
146
26
21
18
33
1.97
53889028--53889055
14
2.0
14
100
0
56
50
21
7
21
1.72
53892403--53892436
17
2.0
17
88
0
50
35
8
20
35
1.84
53898589--53898631
23
1.9
22
85
4
59
34
4
0
60
1.17
53904320--53904370
26
2.0
25
81
11
59
49
9
0
41
1.36
53905714--53905794
36
2.2
37
80
17
96
41
6
0
51
1.27
53910242--53910282
5
8.2
5
100
0
82
21
19
19
39
1.93
53910372--53910404
15
2.1
16
88
5
50
18
12
12
57
1.64
53913194--53913289
44
2.2
44
88
3
140
31
12
9
46
1.73
53915600--53915628
8
3.6
8
100
0
58
37
0
0
62
0.96
53915651--53915686
5
7.4
5
93
6
65
41
0
0
58
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53917004--53917042
18
2.1
19
90
4
62
41
0
10
48
1.37
53917282--53917416
39
3.4
39
74
6
112
23
20
28
28
1.99
53918227--53918270
22
2.0
22
86
8
63
27
47
15
9
1.76
53920112--53920161
25
2.0
25
96
0
91
20
32
18
30
1.96
53920120--53920176
25
2.3
25
87
0
78
21
26
21
31
1.98
53924969--53925428
230
2.0
230
100
0
920
26
26
16
30
1.97
53931729--53931763
16
2.2
16
90
5
54
71
2
2
22
1.13
53934364--53934410
11
3.5
15
72
27
59
46
0
4
48
1.21
53934367--53934418
25
2.1
25
100
0
104
48
0
3
48
1.20
53934373--53934429
25
2.3
25
87
0
78
56
1
1
40
1.20
53934575--53934614
21
1.9
21
100
0
80
65
0
20
15
1.28
53941535--53941634
26
3.9
25
84
7
130
32
16
10
42
1.81
53944144--53944198
20
2.7
19
78
10
56
67
3
1
27
1.17
53946406--53946742
44
7.5
44
71
10
211
27
22
20
29
1.98
53957711--53957749
12
3.2
12
86
10
53
7
25
23
43
1.80
53957934--53957968
18
1.9
18
88
0
52
54
8
20
17
1.68
53961787--53961854
33
2.1
33
83
5
84
55
4
5
33
1.44
53965415--53965502
47
1.9
46
93
6
153
56
4
3
35
1.36
53966017--53966046
13
2.3
13
100
0
60
36
0
0
63
0.95
53970638--53970664
14
1.9
14
100
0
54
14
0
48
37
1.45
53971551--53971636
41
2.1
41
95
0
154
39
8
11
40
1.71
53971983--53972119
15
8.8
15
70
14
91
64
18
9
7
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53971986--53972157
47
3.7
47
93
0
281
64
18
8
8
1.46
53971928--53972053
63
2.0
63
92
3
209
60
19
11
8
1.56
53971970--53972072
32
3.3
31
71
9
84
64
18
10
6
1.47
53973137--53973189
17
3.4
17
70
20
60
41
11
24
22
1.86
53973134--53973193
30
2.0
30
100
0
120
40
10
26
23
1.86
53973480--53973549
35
2.0
35
100
0
140
34
2
20
42
1.66
53975313--53975358
3
15.3
3
100
0
92
67
0
0
32
0.91
53986616--53986649
12
2.8
12
83
16
52
58
8
0
32
1.29
53990262--53990386
35
3.6
35
84
2
144
32
24
13
29
1.94
53998188--53998229
15
2.8
15
85
7
50
61
2
0
35
1.09
53998285--53998329
19
2.4
19
85
7
56
57
0
6
35
1.25
54000382--54001169
210
3.7
210
94
0
1315
29
20
19
30
1.97
54009186--54009235
15
3.5
14
79
15
50
42
8
24
26
1.82
54012822--54013668
422
2.0
422
97
1
1608
58
7
8
25
1.54
54013749--54013800
26
2.0
26
92
0
86
26
15
15
42
1.87
54013925--54013990
19
3.2
21
87
6
64
36
19
9
34
1.84
54013942--54014039
19
5.2
19
87
7
146
34
16
10
38
1.82
54013942--54014039
36
2.6
37
87
9
135
34
16
10
38
1.82
54015180--54015450
70
3.9
70
79
1
258
26
19
20
32
1.97
54015187--54015446
140
1.9
140
83
1
342
26
20
21
31
1.98
54026471--54026625
40
3.9
38
77
11
150
35
29
18
17
1.93
54026463--54026625
80
2.1
79
88
1
236
36
29
17
17
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54030011--54030101
40
2.3
40
98
0
173
31
17
0
50
1.46
54033930--54034232
151
2.0
151
96
1
554
28
14
25
31
1.94
54040992--54041031
21
1.9
21
94
0
71
17
37
17
27
1.92
54041450--54041492
19
2.3
19
84
8
52
44
23
2
30
1.66
54041870--54042050
40
4.5
40
79
3
159
34
27
22
16
1.95
54041870--54042051
80
2.3
81
83
5
244
34
26
22
15
1.95
54044307--54044357
23
2.2
24
82
3
59
64
7
9
17
1.46
54044342--54044375
13
2.7
13
90
4
52
82
0
14
2
0.79
54045343--54045493
35
4.3
35
81
2
169
32
20
10
36
1.87
54045340--54045493
70
2.2
70
86
0
209
32
20
10
36
1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322