genome.fa.s2.2.7.7.80.10.50.1000.212.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  212  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69898771--69898828	27	2.2	26	84	3	71	20	20	15	43	1.88
69898779--69898833	26	2.1	27	89	3	85	20	20	20	40	1.92
69899224--69899314	27	3.4	27	90	0	146	37	16	19	26	1.93
69901431--69901484	24	2.2	25	77	9	58	31	1	48	18	1.59
69902736--69902830	27	3.5	27	85	0	136	35	15	22	26	1.94
69902974--69903044	36	2.0	36	91	0	115	22	25	32	19	1.98
69905337--69905500	43	3.8	42	77	11	154	34	25	15	25	1.94
69905356--69905499	44	3.4	42	77	13	143	34	24	15	25	1.95
69906497--69906599	37	2.8	37	95	0	179	25	32	19	23	1.98
69906732--69906912	48	3.8	48	96	0	335	31	31	5	31	1.81
69906843--69906990	78	1.9	78	98	0	287	31	30	5	33	1.80
69906921--69907148	48	4.7	48	97	1	411	30	28	6	34	1.83
69906795--69907038	126	1.9	126	99	0	479	31	29	5	33	1.81
69906747--69907086	174	2.0	174	98	0	662	31	30	5	32	1.81
69916020--69916074	27	2.0	27	96	0	101	50	7	12	29	1.67
69917039--69918234	147	8.1	147	90	1	1825	44	9	4	42	1.57
69917039--69918234	295	4.0	295	96	1	2083	44	9	4	42	1.57
69918633--69918665	6	5.7	6	92	7	50	75	0	24	0	0.80
69919067--69919167	42	2.4	42	83	3	123	41	18	15	23	1.89
69919629--69919671	21	2.1	21	83	12	54	0	9	9	81	0.88
69922493--69922529	18	2.1	18	94	0	65	54	2	21	21	1.58
69925229--69925342	39	2.9	39	94	1	192	26	25	28	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69941067--69941122	26	2.2	26	93	0	94	37	23	7	32	1.82
69942618--69942680	31	2.1	30	93	3	108	23	31	7	34	1.84
69949019--69949140	61	2.0	61	95	0	217	25	27	18	27	1.98
69958770--69958877	26	4.2	26	93	0	189	36	24	7	32	1.83
69961344--69961393	26	1.9	26	84	15	68	46	16	8	30	1.75
69963009--69963087	31	2.5	31	87	0	122	27	27	16	27	1.97
69963111--69963202	42	2.2	42	92	0	148	34	21	14	29	1.93
69963347--69963496	26	5.8	26	90	0	230	28	22	22	27	1.99
69963347--69963496	52	2.9	52	93	1	257	28	22	22	27	1.99
69963347--69963496	78	1.9	77	93	1	255	28	22	22	27	1.99
69964299--69964381	27	3.1	27	91	5	125	24	26	18	31	1.97
69964440--69964576	56	2.5	54	80	8	143	32	6	18	43	1.76
69964421--69964658	27	8.7	27	77	4	183	31	7	19	41	1.80
69964651--69964834	27	6.8	27	89	0	233	40	6	23	29	1.80
69964624--69964783	81	2.0	81	79	0	176	41	7	20	30	1.79
69964841--69964929	27	3.3	27	84	3	108	33	10	15	40	1.81
69967137--69967215	31	2.5	31	89	0	122	27	27	15	29	1.96
69967239--69967330	42	2.2	42	92	0	148	34	21	14	29	1.93
69967475--69967627	26	5.8	26	87	5	200	28	22	20	28	1.99
69967475--69967627	55	2.9	51	87	8	218	28	22	20	28	1.99
69968430--69968510	27	3.0	26	90	3	108	23	25	19	30	1.98
69968553--69968790	27	8.7	27	76	3	172	32	8	19	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69968782--69968987	27	7.6	27	88	0	250	39	8	23	28	1.84
69973821--69973988	40	4.2	40	83	4	106	25	27	23	23	2.00
69973844--69973988	40	3.6	40	85	4	193	23	26	24	25	2.00
69979800--69979891	46	2.0	46	100	0	184	23	28	17	30	1.97
69980927--69981864	41	23.2	40	85	6	233	24	27	25	22	2.00
69980980--69981862	81	10.9	81	98	0	1669	24	26	25	22	2.00
69982078--69982184	54	2.0	54	96	0	196	14	28	14	42	1.86
69983396--69983626	116	2.0	116	96	0	426	29	22	16	31	1.96
69986847--69987088	50	4.8	50	79	4	247	30	26	18	24	1.98
69988750--69988780	15	2.1	15	93	0	53	35	19	0	45	1.51
69988991--69989324	50	6.6	50	71	6	271	30	26	17	26	1.97
69989095--69989268	51	3.4	51	75	4	190	31	25	17	25	1.97
69989041--69989323	101	2.8	101	90	0	422	30	26	17	26	1.97
69996801--69997015	54	3.9	55	80	6	213	21	25	16	37	1.93
69996828--69997020	54	3.6	54	83	3	244	22	24	17	35	1.95
69996838--69997272	101	4.3	100	73	11	323	23	24	16	35	1.95
69997197--69997300	47	2.2	47	96	0	190	25	24	14	35	1.93
69998171--69998331	79	2.0	79	100	0	322	39	18	13	28	1.89
70008020--70008110	42	2.2	42	80	11	98	30	26	18	24	1.98
70008063--70008193	48	2.7	48	86	0	190	29	25	19	25	1.99
70008175--70008259	37	2.3	37	81	0	107	24	24	18	31	1.98
70011072--70011106	18	1.9	18	100	0	70	37	22	28	11	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70013060--70013101	20	2.1	20	95	0	75	30	16	9	42	1.80
70015542--70015881	40	8.4	40	94	1	599	27	25	23	24	2.00
70023893--70024116	40	5.6	40	82	6	274	25	25	23	25	2.00
70023893--70024116	83	2.8	79	85	6	281	25	25	23	25	2.00
70031841--70032051	114	1.9	114	100	0	422	44	16	13	26	1.84
70058345--70058383	20	2.0	20	94	0	69	69	12	2	15	1.30
70060232--70060273	10	4.2	10	79	8	50	16	0	35	47	1.47
70062368--70062536	46	3.6	46	80	6	198	23	28	18	28	1.98
70062359--70062536	94	1.9	93	86	5	252	23	29	18	28	1.98
70064759--70064818	30	2.0	30	87	6	86	28	25	10	36	1.88
70069721--70069766	24	2.0	23	83	12	58	32	17	6	43	1.75
70080036--70080248	47	4.6	47	86	2	288	25	27	16	30	1.97
70080125--70080392	47	5.7	46	77	8	152	23	26	18	31	1.97
70086598--70086772	46	3.8	45	72	15	160	22	19	27	30	1.98
70086595--70086765	93	1.8	93	87	5	256	22	19	27	30	1.98
70089172--70089224	25	2.1	25	92	0	88	28	24	26	20	1.99
70090141--70090168	14	2.0	14	100	0	56	35	14	21	28	1.92
70101454--70101663	40	5.3	39	89	4	242	25	21	27	25	1.99
70101401--70101663	120	2.2	120	82	4	309	25	21	27	25	1.99
70101402--70101698	80	3.7	80	81	6	230	26	21	27	24	1.99
70106870--70107044	46	3.8	45	74	13	158	21	18	29	31	1.97
70106867--70107037	93	1.8	93	87	2	254	21	18	29	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70110863--70110927	25	2.6	25	82	0	94	26	23	20	30	1.98
70115133--70115177	22	2.0	21	84	16	56	28	0	13	57	1.36
70117330--70117508	40	4.5	40	87	3	247	25	22	25	26	2.00
70117330--70117498	79	2.1	80	88	4	245	24	23	25	26	2.00
70124606--70124712	40	2.7	41	91	4	166	23	24	26	26	2.00
70128537--70128593	8	6.3	9	78	17	57	45	1	1	50	1.22
70129833--70129866	17	2.0	17	94	0	59	20	11	20	47	1.81
70130135--70130321	46	4.6	40	73	12	130	31	14	21	31	1.94
70130215--70130305	46	2.0	46	97	0	173	35	13	20	30	1.91
70132822--70132880	26	2.3	26	85	2	75	61	0	5	33	1.18
70132850--70132905	9	6.3	9	74	12	53	60	0	1	37	1.07
70135435--70136226	36	22.0	36	100	0	1584	38	5	2	52	1.39
70137411--70137573	46	3.6	45	74	14	154	21	20	28	30	1.98
70142030--70143012	40	24.6	40	97	0	1639	22	21	29	25	1.99
70145926--70146089	40	4.2	40	83	5	183	27	26	20	25	1.99
70152114--70152275	43	3.8	43	80	6	168	32	27	16	24	1.96
70152111--70152275	86	1.9	85	83	8	210	33	26	15	24	1.95
70154377--70154421	19	2.4	19	92	0	72	35	24	15	24	1.94
70154385--70154422	19	2.0	19	100	0	76	36	26	15	21	1.93
70160437--70160489	26	2.0	26	100	0	106	35	18	18	26	1.95
70162963--70163104	71	2.1	67	84	5	176	30	23	27	18	1.97
70164111--70164377	134	2.0	134	99	0	525	38	11	20	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70165239--70165416	27	6.6	27	83	3	205	26	15	28	29	1.96
70165240--70165395	82	1.9	81	88	3	233	26	15	28	29	1.96
70165236--70165416	82	2.2	81	83	2	229	27	15	27	29	1.96
70165543--70165667	62	2.0	62	100	0	250	33	16	17	32	1.92
70165808--70166417	305	2.0	305	100	0	1220	22	16	22	38	1.93
70170948--70170987	15	2.5	17	80	19	50	25	0	22	52	1.47
70174687--70174712	6	4.3	6	100	0	52	50	0	19	30	1.48
70179906--70180057	40	3.8	41	85	3	184	25	21	26	26	1.99
70179906--70180077	80	2.2	80	80	3	186	25	20	26	27	1.99
70188175--70188281	55	1.9	55	98	0	205	30	5	24	39	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322