Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  112  of  318  ( 38109 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35735377--35735449
24
3.1
23
82
7
92
39
23
21
15
1.91
35735420--35735513
25
3.8
25
71
9
77
35
21
23
20
1.96
35735472--35735560
26
3.4
26
74
13
78
35
20
23
20
1.95
35736035--35736065
16
1.9
16
93
0
53
41
12
0
45
1.42
35736026--35736075
26
1.9
26
87
0
73
40
16
0
44
1.47
35736032--35736075
5
8.6
5
80
5
52
40
15
0
43
1.47
35738121--35738148
14
2.0
14
100
0
56
64
21
7
7
1.43
35743019--35743072
20
2.6
21
82
11
67
35
0
7
57
1.27
35743058--35743106
3
17.3
3
76
19
52
28
2
0
69
1.00
35743062--35743100
11
3.5
11
92
0
69
28
2
0
69
1.02
35743058--35743099
19
2.2
19
87
8
59
26
2
0
71
0.98
35744733--35745119
46
8.4
46
88
2
546
40
13
22
22
1.89
35744766--35745104
183
1.9
183
90
2
547
41
13
22
23
1.88
35746588--35746634
19
2.5
20
75
6
53
6
12
6
74
1.20
35751278--35751318
13
3.2
13
96
0
73
14
31
31
21
1.94
35766001--35766055
24
2.3
24
83
0
65
30
25
27
16
1.96
35766215--35766269
24
2.3
24
81
6
67
27
16
36
20
1.93
35768329--35768400
24
3.1
23
71
15
67
61
2
1
34
1.19
35770739--35770766
5
5.6
5
100
0
56
64
0
35
0
0.94
35770988--35771036
24
2.0
24
100
0
98
36
24
4
34
1.75
35772923--35772947
13
1.9
13
100
0
50
32
0
16
52
1.44
35788494--35788524
13
2.3
14
94
5
55
54
3
0
41
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35794128--35794179
24
2.2
24
83
13
63
48
0
1
50
1.12
35796325--35796378
21
2.7
20
86
13
76
33
5
3
57
1.40
35797376--35797400
7
3.6
7
100
0
50
28
0
12
60
1.32
35797897--35797995
30
3.3
30
84
2
137
31
42
17
9
1.80
35797901--35797976
13
5.2
15
74
22
65
31
42
15
10
1.81
35798052--35798094
18
2.4
18
88
0
59
18
27
6
46
1.75
35802278--35803279
126
8.0
126
93
0
1682
25
19
19
35
1.95
35803401--35803473
19
3.8
19
78
7
67
45
20
2
31
1.65
35803542--35803587
21
2.2
21
96
0
83
50
32
0
17
1.47
35804176--35804220
15
2.9
16
86
6
74
42
6
0
51
1.28
35805515--35805987
260
1.8
260
89
1
743
42
13
11
32
1.80
35805984--35806045
19
3.2
19
75
8
54
59
3
0
37
1.13
35806268--35806311
16
2.8
17
78
21
51
27
25
6
40
1.80
35808381--35808454
3
25.3
3
76
15
75
67
0
32
0
0.91
35808404--35808450
8
5.9
8
87
7
69
70
0
29
0
0.88
35808381--35808453
11
6.8
11
75
18
66
68
0
31
0
0.90
35808381--35808454
25
3.2
24
83
9
91
67
0
32
0
0.91
35808478--35808535
20
2.9
20
70
10
55
62
0
37
0
0.96
35808965--35809033
15
4.4
15
74
13
59
71
2
7
18
1.23
35808999--35809031
17
1.9
17
93
0
57
72
0
12
15
1.12
35809155--35809374
119
1.9
120
94
1
390
55
9
6
28
1.56
35809342--35809406
13
4.7
13
75
14
58
73
1
3
21
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35809344--35809404
30
2.1
29
90
3
95
72
1
3
22
1.09
35812124--35812207
26
3.1
26
72
24
91
47
13
2
36
1.55
35812132--35812213
17
4.5
17
72
14
65
47
13
4
34
1.64
35815857--35815977
42
3.1
39
76
10
122
50
14
3
32
1.59
35815886--35815980
42
2.3
42
84
0
127
53
14
2
29
1.53
35815938--35816003
25
2.6
25
90
2
96
48
7
3
40
1.47
35816018--35816066
23
2.0
25
84
7
66
69
16
0
14
1.19
35816101--35816161
33
1.9
32
83
6
79
3
29
0
67
1.07
35819504--35819549
10
4.3
11
78
15
60
54
8
8
28
1.61
35819505--35819547
22
2.0
22
86
9
61
53
9
9
27
1.63
35831126--35831159
17
1.9
18
88
5
52
50
8
14
26
1.72
35833901--35833953
25
2.1
25
82
6
63
56
5
11
26
1.56
35833996--35834022
8
3.4
8
100
0
54
62
11
11
14
1.53
35838728--35838771
22
2.0
23
86
4
63
31
6
27
34
1.83
35843477--35843516
21
1.9
21
85
10
55
60
2
5
32
1.32
35850388--35850438
26
1.9
27
88
4
77
56
5
1
35
1.35
35852344--35852382
15
2.5
16
87
4
62
69
10
2
17
1.28
35860098--35861080
120
8.2
120
98
0
1894
44
2
5
47
1.39
35860282--35860969
44
16.9
44
62
20
133
44
2
5
47
1.38
35860909--35860943
18
2.0
17
88
5
52
45
0
0
54
0.99
35861029--35861063
18
2.0
17
88
5
52
45
0
0
54
0.99
35861299--35861367
16
4.2
16
87
3
102
36
34
1
27
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35861299--35861367
33
2.1
32
89
2
102
36
34
1
27
1.66
35862248--35862299
21
2.5
21
84
6
61
34
3
3
57
1.35
35862311--35862353
20
2.2
20
82
0
50
48
11
0
39
1.40
35864372--35864427
29
2.0
28
86
10
78
64
5
5
25
1.36
35865679--35865708
3
10.0
3
100
0
60
66
0
0
33
0.92
35869827--35869872
20
2.3
20
82
14
60
28
28
17
26
1.98
35876036--35876094
25
2.6
23
75
15
59
45
1
1
50
1.21
35876116--35876157
13
2.9
14
80
13
50
54
0
0
45
0.99
35876120--35876156
16
2.3
16
86
13
58
59
0
0
40
0.97
35876189--35876245
15
3.5
15
71
17
51
49
1
1
47
1.22
35878767--35878848
39
2.1
39
93
0
137
32
4
13
48
1.63
35882704--35882752
20
2.5
20
100
0
98
30
14
14
40
1.85
35885208--35885243
18
2.0
18
94
0
63
25
8
0
66
1.19
35886130--35886160
15
2.0
16
93
6
55
45
0
0
54
0.99
35886297--35886337
15
2.5
17
80
11
50
58
0
0
41
0.98
35890182--35890231
10
5.0
10
81
13
59
22
8
2
68
1.26
35912209--35912262
27
2.0
27
96
0
99
37
9
7
46
1.64
35924903--35925404
124
4.0
126
86
3
643
27
15
17
39
1.90
35924903--35925407
126
4.0
126
87
2
672
27
15
17
38
1.90
35925464--35925806
29
11.8
29
68
20
152
41
18
1
39
1.58
35925495--35925538
22
2.0
22
86
0
61
38
18
0
43
1.50
35925655--35925714
25
2.4
25
83
8
79
41
15
0
43
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35925743--35925784
22
1.9
22
100
0
84
42
16
0
40
1.48
35925515--35925814
88
3.4
88
80
9
283
41
17
1
39
1.58
35925765--35925847
34
2.4
35
82
9
91
45
13
0
40
1.43
35927523--35927570
21
2.3
21
88
0
69
41
2
0
56
1.11
35928115--35928164
26
1.9
26
84
8
66
42
2
4
52
1.31
35932524--35932556
16
2.1
16
88
5
50
24
3
21
51
1.62
35933801--35933857
20
3.0
20
69
27
52
47
0
1
50
1.11
35951655--35951694
17
2.4
17
100
0
80
45
5
5
45
1.47
35958635--35958697
24
2.8
23
79
13
60
63
3
1
31
1.19
35958649--35958697
21
2.2
21
85
10
62
69
2
0
28
1.00
35958681--35958773
28
3.3
29
75
10
86
74
2
19
4
1.09
35958704--35958774
6
11.7
6
71
14
56
73
1
23
1
1.00
35963744--35963829
36
2.4
35
79
9
93
34
4
6
53
1.49
35975650--35975680
16
1.9
16
93
0
53
16
12
6
64
1.47
35975581--35975988
89
5.0
86
79
14
361
27
16
21
33
1.96
35975666--35976127
75
6.1
73
80
10
493
27
18
22
31
1.97
35975666--35976134
155
3.1
148
84
9
567
27
17
22
31
1.97
35976067--35976305
87
2.7
89
79
8
249
29
16
18
35
1.93
35978497--35978554
24
2.4
24
85
8
73
29
12
3
55
1.53
35980110--35980141
14
2.3
15
89
10
50
84
0
15
0
0.63
35983062--35983111
26
1.9
26
87
0
73
46
4
10
40
1.56
35983497--35983529
13
2.5
13
95
0
57
45
9
15
30
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35984686--35984710
12
2.1
12
100
0
50
24
16
16
44
1.86
36000020--36000116
5
19.4
5
100
0
194
59
0
0
40
0.97
36000019--36000143
15
8.2
16
92
2
75
55
0
0
44
1.05
36000285--36000329
20
2.2
20
100
0
90
35
4
8
51
1.54
36001996--36002047
6
8.7
6
93
0
68
73
1
11
13
1.19
36004567--36004602
3
12.0
3
100
0
72
33
0
0
66
0.92
36004958--36004992
18
1.9
18
88
0
52
22
0
5
71
1.07
36005045--36005092
24
1.9
26
84
16
66
35
0
6
58
1.23
36005136--36005174
21
1.9
20
89
5
60
23
2
10
64
1.37
36016558--36016661
44
2.5
42
75
18
103
48
15
21
15
1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318