genome.fa.s5.2.7.7.80.10.50.1000.249.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  249  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79257040--79257110	22	3.2	22	64	18	56	47	18	9	23	1.78
79259114--79259244	40	3.3	40	89	2	201	23	20	27	28	1.99
79259114--79259281	40	4.2	38	81	9	167	24	20	27	27	1.99
79267018--79267201	40	4.6	40	83	6	205	23	21	27	27	1.99
79267018--79267198	80	2.3	81	84	9	230	23	21	27	27	1.99
79270115--79270429	46	6.8	46	75	12	313	29	28	20	21	1.98
79270123--79270383	93	2.8	93	95	0	468	29	28	19	21	1.98
79270170--79270332	47	3.5	47	77	14	210	30	28	19	22	1.97
79277275--79277335	30	2.0	30	83	0	77	40	4	22	31	1.75
79284491--79284523	16	2.0	17	88	5	50	75	21	3	0	0.93
79288260--79288374	48	2.4	47	72	8	106	33	19	23	24	1.97
79288359--79288409	26	2.0	26	92	0	84	35	23	23	17	1.95
79291018--79291299	96	2.9	95	89	2	438	28	17	27	26	1.98
79291022--79291301	48	5.8	48	80	1	301	28	17	27	26	1.98
79292330--79292384	21	2.6	21	76	0	56	14	36	27	21	1.93
79292632--79292762	47	2.8	48	87	2	176	36	25	14	23	1.93
79293320--79293382	31	2.1	30	82	11	76	34	26	0	38	1.57
79294590--79297162	429	6.0	429	98	0	4894	31	22	13	32	1.93
79298838--79298890	26	2.0	26	96	0	97	24	30	7	37	1.83
79301449--79301481	12	2.8	12	95	4	59	24	51	24	0	1.48
79302264--79302367	55	1.9	55	97	0	199	50	18	3	26	1.63
79304074--79304157	26	3.2	26	96	0	150	33	4	25	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79305704--79305746	21	2.1	20	87	12	61	18	11	20	48	1.79
79308743--79308795	26	2.0	26	85	7	72	37	22	15	24	1.92
79310219--79310326	26	4.2	26	91	0	180	32	8	24	35	1.85
79316044--79316151	26	4.2	26	91	0	180	32	8	24	35	1.85
79331996--79332103	26	4.2	26	91	0	180	31	6	25	36	1.82
79341970--79342053	43	2.0	43	92	0	141	28	30	17	22	1.97
79347896--79348550	132	4.9	132	76	7	465	35	18	18	27	1.94
79347916--79348514	266	2.3	267	78	5	588	35	18	18	27	1.94
79351498--79352486	221	4.5	221	89	1	1464	22	32	16	28	1.96
79351498--79352486	44	22.4	44	87	0	1375	22	32	16	28	1.96
79353720--79353796	5	15.4	5	75	18	72	1	20	0	77	0.83
79353720--79353804	9	9.5	8	80	14	71	1	20	0	78	0.81
79353725--79353807	15	5.7	15	78	18	95	1	19	0	79	0.80
79356354--79356395	19	2.2	19	87	8	59	38	11	26	23	1.90
79357932--79358587	132	5.0	132	76	9	480	35	18	18	27	1.94
79361593--79361620	5	5.6	5	100	0	56	17	0	0	82	0.68
79363012--79363063	18	3.2	17	70	30	51	40	0	3	55	1.18
79373448--79373580	21	6.3	21	81	1	124	48	16	21	13	1.80
79373448--79373580	42	3.2	42	80	2	142	48	16	21	13	1.80
79394476--79394512	17	2.2	17	90	0	56	21	10	21	45	1.82
79397280--79397309	15	1.9	16	93	6	53	16	6	0	76	0.99
79399584--79399644	30	2.0	30	83	0	77	29	24	6	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79402407--79402492	43	2.0	43	82	8	104	26	17	27	27	1.98
79407263--79407423	40	4.0	40	90	2	252	31	21	20	26	1.98
79407844--79407911	7	9.6	7	84	9	59	48	25	0	26	1.51
79407836--79407925	21	4.2	21	72	12	58	53	22	0	24	1.46
79412506--79412699	23	8.5	23	79	7	189	32	3	22	41	1.69
79413609--79413668	28	2.2	27	80	8	68	41	21	23	13	1.88
79413609--79413692	27	3.1	28	79	5	75	38	21	22	17	1.94
79415314--79415397	26	3.2	26	93	0	141	35	25	5	33	1.80
79415739--79416432	23	30.3	23	73	10	397	33	4	23	38	1.76
79415789--79415848	22	2.7	22	80	10	68	31	1	23	43	1.64
79415857--79416398	206	2.6	207	88	2	808	33	4	22	38	1.76
79417104--79417253	43	3.5	43	88	0	212	20	16	30	32	1.94
79422590--79422623	17	1.9	18	94	5	61	58	5	8	26	1.51
79423349--79423388	20	2.0	20	90	9	64	70	2	7	20	1.24
79428482--79428637	52	3.0	51	82	8	179	27	15	25	32	1.95
79432628--79432765	26	5.6	23	73	13	82	31	19	22	26	1.98
79439787--79439834	22	2.1	23	81	14	64	54	0	2	43	1.12
79439794--79439839	22	2.0	23	88	12	69	50	0	2	47	1.13
79440296--79440357	19	3.2	19	67	13	54	38	14	0	46	1.45
79440287--79440365	39	2.0	39	97	0	149	36	18	0	44	1.51
79443085--79443441	47	7.7	44	73	12	245	27	19	29	24	1.98
79443134--79443390	44	5.6	45	76	11	247	27	17	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79443091--79443390	91	3.3	91	85	6	351	27	18	29	24	1.98
79444641--79444678	19	2.0	19	100	0	76	31	36	21	10	1.87
79450757--79451023	47	5.7	47	72	10	192	27	20	29	21	1.98
79450802--79451063	91	2.8	90	85	5	319	29	19	29	22	1.98
79453613--79453701	43	2.1	43	97	0	169	32	29	7	30	1.86
79455962--79456020	29	2.0	29	90	0	91	18	22	6	52	1.68
79459620--79459746	63	2.0	63	100	0	254	38	14	22	25	1.91
79462526--79462556	14	2.3	13	94	5	53	25	0	0	74	0.82
79464317--79464419	43	2.4	43	80	6	111	28	17	22	32	1.96
79464965--79465008	11	4.0	11	81	18	56	18	6	27	47	1.73
79464975--79465020	12	3.8	12	81	18	60	17	6	26	50	1.70
79464965--79465014	23	2.2	23	100	0	100	18	8	26	48	1.75
79474158--79474365	46	4.5	46	80	9	203	27	19	29	23	1.98
79474155--79474324	94	1.8	92	85	8	238	27	20	28	24	1.99
79476494--79476615	63	1.9	63	96	0	226	30	9	15	44	1.79
79478745--79478835	40	2.3	40	92	3	148	24	19	27	28	1.99
79486599--79486782	40	4.6	40	82	6	196	24	21	26	27	1.99
79486599--79486779	80	2.3	81	83	9	221	24	21	27	27	1.99
79489056--79489163	44	2.5	44	80	8	116	25	19	21	34	1.96
79495078--79495152	30	2.5	29	76	18	82	26	13	12	48	1.77
79498296--79498487	30	6.4	30	78	8	160	39	13	24	22	1.90
79498357--79498427	29	2.4	30	88	2	108	42	15	26	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79498322--79498546	30	7.6	30	75	5	120	40	12	24	22	1.89
79498326--79498510	89	2.1	89	83	8	225	39	14	24	22	1.91
79498296--79498616	119	2.7	118	84	3	385	37	14	25	23	1.92
79498535--79498604	30	2.3	30	82	4	88	31	12	31	24	1.93
79510173--79510335	17	9.6	17	69	7	98	23	9	26	40	1.84
79510357--79510425	17	4.1	17	68	20	54	28	4	17	49	1.66
79512147--79512311	43	3.8	43	71	9	129	27	14	24	33	1.94
79515674--79515703	15	2.0	15	100	0	60	13	13	26	46	1.80
79516609--79516658	23	2.2	23	82	3	57	52	32	0	16	1.44
79517114--79517169	27	2.1	27	89	0	85	23	23	28	25	1.99
79521725--79521755	16	1.9	16	100	0	62	32	6	9	51	1.60
79531146--79531220	26	2.9	26	80	7	98	33	18	6	41	1.77
79533671--79533905	121	1.9	121	92	0	398	36	17	14	31	1.90
79539554--79539602	21	2.3	21	82	6	64	28	10	32	28	1.90
79541524--79541568	19	2.5	19	89	7	67	64	0	35	0	0.94
79547220--79547263	23	2.0	22	81	4	52	45	4	2	47	1.35
79548879--79548951	31	2.4	31	83	4	85	27	17	8	46	1.76
79552122--79552159	14	2.8	13	92	7	67	60	0	0	39	0.97
79552403--79552448	24	1.9	24	95	0	83	39	17	6	36	1.76
79552997--79553122	61	2.1	60	82	4	146	39	18	6	35	1.76
79555060--79555119	24	2.6	24	80	17	65	41	0	3	55	1.16
79558459--79558497	4	9.5	4	83	5	51	69	0	30	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79558465--79558497	17	1.9	17	93	0	57	72	0	27	0	0.85
79561588--79561648	27	2.2	28	94	5	115	19	24	34	21	1.96
79563888--79563935	22	2.2	22	92	3	80	37	10	2	50	1.49
79576892--79576971	40	2.0	40	92	4	137	42	10	22	25	1.84
79583675--79583709	17	2.1	17	88	0	52	31	0	20	48	1.50
79584057--79584090	17	1.9	18	88	5	52	41	38	2	17	1.65
79587214--79587388	42	4.1	42	78	2	161	22	17	17	41	1.90
79587312--79587416	43	2.5	42	77	12	106	21	18	20	39	1.93
79590391--79590565	46	3.8	47	81	8	200	29	18	28	22	1.98
79591555--79591589	13	2.7	13	100	0	70	31	31	31	5	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318