Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  123  of  318  ( 38109 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38579876--38579913
18
2.1
18
100
0
76
42
0
10
47
1.38
38582690--38582870
86
2.1
86
98
1
355
40
4
7
47
1.52
38582881--38582925
23
2.0
23
100
0
90
35
0
0
64
0.94
38582960--38583289
51
6.0
51
82
17
414
46
18
7
27
1.75
38583050--38583077
12
2.3
12
100
0
56
57
21
0
21
1.41
38582999--38583128
63
2.1
63
100
0
260
47
18
6
27
1.72
38582960--38583289
113
2.9
114
97
2
630
46
18
7
27
1.75
38583163--38583190
12
2.3
12
100
0
56
57
21
0
21
1.41
38583235--38583345
33
3.4
34
82
10
115
43
17
8
31
1.78
38586855--38587273
39
10.5
39
63
14
120
44
5
5
45
1.48
38586893--38586926
17
2.0
17
88
0
50
47
2
0
50
1.16
38586336--38587426
120
9.1
120
98
1
1906
43
3
5
47
1.43
38587375--38587409
18
2.0
17
88
5
52
45
0
0
54
0.99
38587574--38587664
45
2.0
45
85
2
121
37
28
6
27
1.82
38587645--38587713
16
4.2
16
92
3
120
36
37
1
24
1.65
38587645--38587713
33
2.1
32
94
2
120
36
37
1
24
1.65
38587780--38587848
34
2.0
34
83
5
86
37
1
18
42
1.60
38587827--38587878
22
2.4
22
90
0
77
42
0
17
40
1.49
38587864--38587913
22
2.3
22
86
3
66
28
0
18
54
1.44
38587888--38587956
34
2.0
34
86
5
95
37
0
17
44
1.49
38587938--38587986
21
2.3
22
85
3
73
42
0
14
42
1.45
38587731--38588071
107
3.1
108
91
2
531
35
0
19
44
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38587971--38588021
22
2.4
21
83
9
59
29
0
17
52
1.45
38587995--38588061
34
2.0
34
82
5
82
35
0
17
46
1.49
38588056--38588112
22
2.5
24
80
8
73
36
0
17
45
1.49
38588079--38588138
29
2.1
29
84
12
79
41
0
13
45
1.43
38588180--38588553
126
3.0
124
88
2
500
39
17
15
27
1.90
38593537--38593581
20
2.1
22
84
8
58
35
0
4
60
1.17
38593570--38593609
21
1.9
21
89
0
62
37
5
5
52
1.45
38593653--38593736
24
3.3
25
80
14
93
35
1
5
57
1.31
38593716--38593748
15
2.2
15
89
10
50
33
0
0
66
0.92
38593653--38593808
24
6.9
23
71
25
91
33
1
5
58
1.31
38593933--38594007
25
2.9
24
70
18
62
33
6
2
57
1.39
38594126--38594186
27
2.3
26
82
2
77
39
6
3
50
1.45
38594126--38594195
26
2.6
28
80
8
83
38
7
2
51
1.44
38594258--38594323
16
4.1
16
76
19
57
33
4
1
60
1.26
38594281--38594364
3
28.0
3
68
17
50
28
5
1
64
1.24
38595903--38595987
24
3.2
26
70
18
84
64
3
1
30
1.17
38595905--38596023
54
2.2
54
95
0
211
63
3
1
31
1.21
38595940--38596021
18
4.5
19
67
19
50
60
3
1
34
1.22
38597867--38597911
21
2.1
21
95
0
81
53
17
4
24
1.62
38599175--38599236
30
2.1
30
93
0
106
29
3
9
58
1.46
38601044--38601109
33
2.0
33
84
3
87
19
10
6
63
1.47
38606724--38606917
69
2.8
69
92
0
307
34
9
37
19
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38608301--38608360
30
2.0
30
96
0
111
30
31
1
36
1.68
38610825--38610864
21
1.9
21
100
0
80
37
17
25
20
1.94
38611078--38611116
18
2.3
17
86
8
53
38
5
12
43
1.65
38611858--38611887
15
2.0
15
93
0
51
23
6
46
23
1.75
38615249--38615279
15
2.1
15
93
0
53
38
6
29
25
1.81
38615436--38615474
18
2.3
17
86
8
53
38
5
12
43
1.65
38618349--38618409
20
3.1
20
75
13
72
60
0
3
36
1.13
38619177--38619205
11
2.5
12
94
5
51
79
0
0
20
0.74
38619786--38619827
20
2.0
21
86
4
59
33
0
9
57
1.31
38619877--38619916
21
1.9
21
89
0
62
37
2
2
57
1.26
38619989--38620039
24
2.1
25
88
3
77
33
0
9
56
1.32
38621103--38621253
10
15.7
10
68
20
81
33
3
1
61
1.23
38621165--38621234
18
3.7
19
81
9
81
37
0
0
62
0.95
38621173--38621252
9
8.6
9
77
15
65
33
1
0
65
1.01
38621230--38621274
22
2.0
21
87
8
63
22
4
2
71
1.15
38621174--38621283
20
5.7
20
74
14
88
30
2
0
66
1.12
38623325--38623409
9
9.2
9
70
20
52
64
2
1
31
1.13
38623320--38623397
38
2.0
39
82
2
95
57
2
1
38
1.20
38623331--38623422
19
4.8
18
73
14
60
66
2
2
29
1.15
38635559--38635606
19
2.9
16
82
14
53
70
4
8
16
1.27
38635618--38635965
3
115.3
3
65
16
96
60
2
8
28
1.41
38635854--38635894
22
1.9
21
90
5
64
58
0
12
29
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38637014--38637060
11
4.2
11
83
2
58
4
0
38
57
1.18
38637014--38637056
17
2.5
17
80
0
50
4
0
41
53
1.21
38637280--38637889
45
13.8
42
70
14
329
29
21
18
31
1.97
38637274--38637914
181
3.6
181
90
2
953
28
22
17
31
1.96
38637859--38638307
88
5.1
88
86
3
566
22
24
20
32
1.98
38638001--38638307
44
7.0
43
64
17
139
20
25
22
31
1.98
38640106--38640151
20
2.3
20
92
3
76
4
10
4
80
0.99
38640092--38640147
27
2.0
28
83
10
71
3
12
5
78
1.05
38640886--38640916
16
1.9
16
93
0
53
64
6
16
12
1.47
38642254--38642322
29
2.4
29
92
0
111
42
11
18
27
1.85
38644081--38644128
19
2.9
16
82
14
53
70
4
8
16
1.27
38644140--38644477
3
111.3
3
65
15
99
60
2
8
28
1.41
38645543--38645589
11
4.2
11
83
2
58
4
0
38
57
1.18
38646890--38646919
15
2.0
15
93
0
51
50
0
10
40
1.36
38646886--38646948
27
2.3
26
76
10
63
38
0
11
50
1.38
38646944--38646975
10
3.3
10
95
4
57
31
6
0
62
1.20
38648392--38648445
26
2.3
22
80
20
65
18
20
3
57
1.55
38648402--38648455
26
2.0
27
96
3
101
20
20
7
51
1.70
38649814--38649946
63
2.1
63
91
0
212
42
8
23
26
1.82
38654133--38654167
17
2.1
17
89
10
54
40
0
2
57
1.14
38654666--38654695
15
2.0
15
93
0
51
23
0
10
66
1.21
38656471--38656558
43
2.0
43
91
0
140
51
5
13
29
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38663278--38663435
51
3.2
48
77
15
139
53
5
7
34
1.51
38663354--38663473
47
2.8
44
83
15
137
60
2
2
35
1.24
38663382--38663474
36
2.5
38
81
15
106
61
2
2
34
1.20
38663289--38663433
26
5.8
25
71
15
122
53
4
7
33
1.50
38663427--38663464
15
2.5
15
86
0
58
65
0
0
34
0.93
38663631--38663681
19
2.9
17
78
13
50
39
9
15
35
1.81
38663641--38663683
19
2.1
21
87
8
63
39
9
16
34
1.80
38670453--38670523
9
8.8
8
78
18
60
84
0
14
1
0.69
38670450--38670522
21
3.5
20
85
10
94
84
0
13
1
0.68
38671471--38672172
84
8.4
84
86
7
943
29
22
23
25
1.99
38671471--38672172
166
4.2
169
84
8
858
29
22
23
25
1.99
38671471--38672172
250
2.8
249
91
1
1136
29
22
23
25
1.99
38672342--38672528
87
2.1
87
81
1
205
33
19
22
25
1.97
38672536--38672756
44
5.0
44
75
6
205
32
16
23
27
1.96
38672443--38672760
132
2.4
132
89
2
465
32
17
22
26
1.97
38672723--38673114
174
2.2
175
90
0
597
33
19
19
27
1.96
38674114--38674165
25
2.2
24
86
10
72
21
5
7
65
1.40
38675183--38675211
15
1.9
15
100
0
58
65
0
0
34
0.93
38675258--38675310
26
2.1
25
85
3
70
58
1
7
32
1.37
38675941--38676019
2
39.5
2
100
0
158
0
0
49
50
1.00
38677771--38677841
30
2.4
29
76
19
74
42
2
7
47
1.45
38679014--38679052
20
2.0
20
94
0
69
25
48
10
15
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38685756--38685802
23
2.0
23
100
0
94
38
4
4
53
1.40
38686726--38686795
29
2.5
27
78
17
72
42
5
2
48
1.41
38686860--38686916
15
3.5
15
73
17
60
50
1
0
47
1.11
38687671--38687864
93
2.1
93
93
0
327
43
8
6
41
1.61
38691971--38692007
18
2.0
19
89
5
58
48
0
21
29
1.50
38692035--38692099
33
2.0
33
82
17
82
40
0
16
43
1.49
38694094--38694126
17
1.9
17
100
0
66
24
6
3
66
1.28
38710015--38710043
14
2.0
15
93
6
51
41
6
17
34
1.76
38710459--38710488
4
7.5
4
100
0
60
0
23
0
76
0.78
38713658--38713699
19
2.1
21
86
8
61
57
4
7
30
1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318