genome.fa.s5.2.7.7.80.10.50.1000.197.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  197  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62045287--62045378	42	2.2	42	90	0	139	29	15	21	33	1.94
62046122--62046395	27	10.2	27	79	7	200	40	22	8	29	1.82
62046136--62046367	80	2.9	81	85	2	281	41	21	8	28	1.82
62046136--62046368	27	8.7	26	80	6	216	41	21	8	28	1.82
62046325--62046396	26	2.7	26	81	10	83	43	22	4	30	1.72
62046511--62046602	27	3.4	27	84	3	114	32	21	25	20	1.98
62047405--62047514	51	2.2	52	83	8	147	29	20	22	27	1.99
62047405--62047502	26	3.8	26	90	2	137	27	22	22	27	1.99
62047647--62047738	42	2.2	42	92	0	148	29	14	21	34	1.93
62059483--62059615	49	2.7	49	90	4	205	27	23	28	20	1.99
62067526--62067570	6	7.3	6	87	12	65	22	0	0	77	0.76
62067526--62067585	24	2.5	23	86	8	75	23	1	0	75	0.90
62071621--62071798	27	6.6	27	83	3	178	29	28	14	27	1.95
62071642--62071797	82	1.9	81	85	3	215	29	28	14	27	1.95
62079539--62079716	27	6.6	27	84	3	205	29	28	15	26	1.96
62079560--62079715	82	1.9	81	88	3	233	29	28	15	26	1.96
62091436--62091558	49	2.5	49	84	6	151	27	22	27	21	1.99
62094635--62094694	30	2.0	30	87	6	86	36	8	26	28	1.85
62095341--62095587	49	5.0	50	81	2	282	25	18	27	29	1.98
62095344--62095585	100	2.4	100	86	2	317	25	18	26	29	1.98
62104890--62104970	43	1.9	42	87	2	117	19	30	22	27	1.98
62110962--62111145	40	4.7	40	81	11	186	25	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62110962--62111145	79	2.3	81	82	10	220	25	22	27	25	2.00
62110963--62111178	79	2.7	79	80	11	205	25	22	27	24	2.00
62118922--62119045	36	3.4	37	82	11	116	27	19	29	24	1.98
62134426--62134604	40	4.6	38	76	14	159	25	21	26	26	1.99
62143116--62143223	40	2.7	40	86	5	155	35	25	14	24	1.94
62148922--62148960	14	2.6	16	88	8	55	41	2	20	35	1.66
62149157--62149268	45	2.5	45	81	5	138	21	16	28	33	1.95
62149237--62149321	44	1.9	44	85	0	116	22	18	29	29	1.98
62159323--62159373	25	2.0	26	85	14	70	13	15	3	66	1.39
62160477--62160527	12	4.6	11	75	15	52	74	1	0	23	0.92
62163887--62163958	28	2.6	28	88	0	99	29	27	12	30	1.93
62171017--62171136	42	2.9	42	74	2	107	28	22	16	32	1.96
62178114--62178272	76	2.1	76	88	1	239	29	4	15	50	1.64
62178647--62179815	388	3.0	388	99	0	2293	32	14	11	40	1.83
62183312--62183341	13	2.2	14	94	5	53	66	6	0	26	1.16
62183700--62183920	45	5.1	42	78	8	205	25	15	27	31	1.96
62185639--62185676	19	2.0	19	94	0	67	18	5	23	52	1.65
62189233--62189288	26	2.1	27	84	12	73	48	21	14	16	1.81
62189337--62189397	26	2.3	26	85	0	86	40	16	18	24	1.90
62193221--62193262	21	2.0	21	95	0	75	33	7	9	50	1.62
62216561--62216705	47	3.1	47	87	0	209	26	31	10	31	1.90
62216821--62217106	47	6.1	47	91	0	437	27	30	9	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62220118--62220201	42	2.0	42	92	0	141	30	17	20	30	1.96
62229509--62229684	40	4.4	39	86	3	174	24	19	27	27	1.99
62229462--62229684	80	2.8	79	80	3	214	24	21	27	26	1.99
62236942--62236985	22	2.0	22	90	0	70	34	2	36	27	1.70
62241916--62241959	22	2.0	22	95	0	79	34	4	36	25	1.76
62250909--62251007	34	2.9	35	80	7	107	28	22	21	28	1.99
62262575--62262599	13	1.9	13	100	0	50	28	32	16	24	1.96
62264152--62264378	40	5.7	40	96	0	418	21	27	20	30	1.98
62277133--62277367	55	4.4	54	77	8	216	35	17	23	23	1.95
62277141--62277341	108	1.8	110	86	4	291	33	17	24	24	1.96
62284845--62285024	55	3.3	55	76	7	154	34	16	24	24	1.95
62284852--62285052	108	1.8	110	84	4	273	33	16	24	24	1.96
62285293--62285323	16	1.9	16	93	0	53	41	0	22	35	1.54
62287519--62287551	14	2.3	14	94	5	57	33	3	18	45	1.65
62288998--62289060	32	2.0	32	90	3	101	55	12	3	28	1.52
62289468--62289549	41	2.0	41	100	0	164	34	14	17	34	1.90
62293890--62293996	43	2.5	42	77	3	115	31	15	23	28	1.96
62295340--62295445	43	2.4	44	77	3	133	24	16	27	31	1.97
62296142--62296175	16	2.1	16	100	0	68	35	0	29	35	1.58
62296451--62296516	32	2.1	32	97	0	123	16	27	24	31	1.96
62304344--62304462	43	2.8	42	82	5	141	31	12	26	29	1.93
62304555--62304593	20	2.0	20	84	0	51	41	2	23	33	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62304741--62304774	16	2.2	15	89	5	50	29	0	14	55	1.40
62306820--62306849	16	1.9	15	93	6	51	33	23	0	43	1.54
62307060--62307247	50	3.8	50	80	4	209	30	23	18	27	1.98
62307050--62307275	101	2.2	99	80	6	249	30	24	17	26	1.97
62310163--62310205	15	2.9	15	82	0	50	51	13	20	13	1.76
62315187--62315414	114	2.0	114	98	0	438	24	21	21	32	1.98
62319076--62319116	21	2.0	21	95	0	73	12	19	24	43	1.85
62329974--62330247	50	5.6	48	74	11	193	29	20	27	22	1.99
62337157--62337392	95	2.4	98	84	6	286	26	19	28	26	1.98
62337216--62337389	48	3.6	48	77	12	180	25	18	29	27	1.98
62340308--62340340	13	2.6	13	90	4	50	48	12	0	39	1.40
62344453--62344481	14	2.0	15	93	6	51	51	20	0	27	1.47
62346811--62346873	28	2.3	28	83	2	74	41	7	34	15	1.77
62353473--62353607	21	6.4	21	73	3	92	16	21	17	45	1.86
62353451--62353607	42	3.7	42	84	3	163	16	22	16	43	1.87
62353864--62353926	13	4.9	13	80	1	74	30	7	26	34	1.85
62354173--62354223	20	2.4	21	81	15	61	50	1	1	45	1.24
62354173--62354225	21	2.5	21	82	14	65	49	1	1	47	1.23
62355381--62355444	31	2.1	31	96	0	119	45	3	3	48	1.34
62355530--62355592	16	3.9	16	76	14	58	38	1	9	50	1.44
62358379--62358440	29	2.1	30	81	6	72	40	3	9	46	1.53
62360419--62360637	91	2.4	92	83	3	264	35	12	21	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62360483--62360684	91	2.2	89	81	8	219	35	14	21	28	1.93
62361865--62361899	13	2.7	13	90	0	52	60	2	31	5	1.35
62368514--62368552	20	1.9	21	89	5	62	71	2	7	17	1.21
62373588--62373646	30	2.0	30	93	0	100	25	1	13	59	1.44
62374130--62374600	43	10.6	43	72	10	306	27	15	26	30	1.96
62374320--62374439	60	2.0	60	100	0	240	28	15	28	28	1.96
62374292--62374477	103	1.8	103	91	0	309	27	15	27	29	1.96
62374254--62374519	146	1.8	145	87	2	399	27	15	26	29	1.96
62374380--62374600	85	2.6	86	86	1	300	27	16	27	29	1.97
62374380--62374620	128	1.9	128	83	1	313	26	16	27	30	1.96
62382082--62382154	6	12.5	6	76	9	62	76	0	1	21	0.86
62382087--62382120	7	4.9	7	92	7	52	82	0	0	17	0.67
62382082--62382154	18	4.2	18	77	10	80	76	0	1	21	0.86
62382094--62382153	4	15.8	4	73	16	56	75	0	1	23	0.90
62383243--62383324	26	3.2	26	96	0	155	30	6	26	36	1.81
62386179--62386608	47	9.0	47	91	3	653	30	9	31	28	1.88
62386179--62386608	49	9.0	49	91	3	664	30	9	31	28	1.88
62386176--62386608	96	4.5	97	92	2	666	31	9	31	28	1.88
62386729--62386807	37	2.1	37	88	0	113	25	18	30	25	1.98
62388688--62388761	29	2.6	29	87	8	98	27	16	31	25	1.96
62389069--62389645	40	14.4	40	96	0	974	25	23	27	24	2.00
62393070--62393546	47	10.0	47	92	2	738	31	9	31	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62393067--62393548	96	5.0	96	92	2	792	31	9	31	28	1.88
62396054--62396104	26	2.0	26	84	7	68	37	23	15	23	1.93
62398316--62398371	26	2.2	26	100	0	112	30	7	26	35	1.83
62402927--62402967	20	2.0	20	95	0	73	9	17	9	63	1.51
62403183--62403220	17	2.1	18	85	9	51	47	10	2	39	1.52
62426289--62426326	19	2.0	19	100	0	76	31	21	15	31	1.94
62427346--62427378	16	2.1	16	100	0	66	27	18	18	36	1.94
62429741--62429919	27	6.6	27	83	3	207	27	15	27	29	1.96
62429742--62429897	82	1.9	81	88	3	233	26	15	28	29	1.96
62429738--62429919	82	2.2	81	83	2	231	27	15	27	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318