genome.fa.s5.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  95  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31564284--31564333	24	2.1	24	88	0	73	24	42	12	22	1.87
31564448--31564501	12	4.5	12	76	0	54	29	44	9	16	1.79
31564448--31564525	36	2.2	36	92	0	129	26	44	11	16	1.82
31564680--31564720	15	2.7	15	84	0	55	14	65	2	17	1.37
31564689--31564723	18	1.9	18	88	0	52	17	62	0	20	1.32
31569452--31569544	18	5.2	18	77	0	105	33	12	22	31	1.92
31569452--31569544	36	2.6	36	84	0	132	33	12	22	31	1.92
31574135--31574192	29	2.1	27	84	12	73	34	3	5	56	1.38
31574133--31574194	30	2.3	26	76	17	63	37	3	4	54	1.38
31577631--31577702	5	14.8	5	74	21	64	38	0	4	56	1.18
31577660--31577702	19	2.3	19	92	8	70	41	0	0	58	0.98
31577707--31577746	18	2.2	19	90	4	64	80	2	15	2	0.93
31577806--31577833	4	7.0	4	100	0	56	75	0	25	0	0.81
31578626--31578739	44	2.5	44	84	2	138	34	13	21	30	1.92
31578619--31578752	46	3.0	45	82	4	144	35	13	23	28	1.92
31586350--31586402	21	2.5	22	79	14	58	73	0	5	20	1.03
31588940--31589047	53	2.0	53	100	0	216	22	9	21	47	1.79
31590224--31590254	14	2.2	14	94	0	53	45	12	3	38	1.59
31600312--31600343	7	4.6	7	96	0	55	71	3	12	12	1.25
31602445--31602488	23	2.0	22	86	8	63	20	15	29	34	1.94
31602973--31603037	28	2.3	28	89	0	94	32	26	7	33	1.85
31603143--31603232	27	3.2	27	79	7	101	18	24	23	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31603153--31603243	27	3.2	28	76	7	69	20	26	19	32	1.97
31607084--31607113	15	1.9	16	93	6	53	76	3	0	20	0.92
31612775--31612817	18	2.3	19	92	4	70	74	0	6	18	1.04
31613701--31613748	15	3.1	16	83	16	57	70	2	0	27	0.98
31613692--31613762	11	6.5	11	76	12	58	66	2	1	29	1.15
31614733--31614787	28	2.0	27	82	3	65	45	16	7	30	1.74
31614822--31614866	18	2.5	18	78	10	56	42	15	4	37	1.67
31614759--31614866	36	3.0	36	78	1	101	39	13	8	37	1.75
31614916--31614962	18	2.6	19	75	21	55	63	2	4	29	1.25
31617461--31617581	56	2.2	56	92	4	201	64	11	0	23	1.26
31618070--31618123	19	2.9	19	80	2	65	50	12	5	31	1.64
31618072--31618123	18	2.8	19	82	5	70	51	11	5	30	1.61
31618304--31618334	6	5.2	6	92	0	53	48	16	19	16	1.81
31627763--31627787	3	8.3	3	100	0	50	32	0	0	68	0.90
31633236--31633267	3	10.7	3	93	0	55	31	3	0	65	1.08
31633552--31633583	9	3.6	9	95	0	55	3	6	0	90	0.53
31637018--31637069	18	2.8	19	72	18	56	34	3	0	61	1.14
31637653--31637677	5	5.0	5	100	0	50	0	60	0	40	0.97
31646044--31646101	28	2.0	30	83	12	77	56	0	1	41	1.09
31652411--31652996	51	12.7	44	70	14	245	28	21	17	32	1.96
31652404--31652578	96	1.8	95	84	6	237	28	25	17	28	1.98
31652404--31652996	137	4.3	139	85	4	680	28	21	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31660603--31660646	19	2.2	20	88	4	63	43	4	22	29	1.73
31664756--31664797	18	2.3	18	84	11	59	50	2	11	35	1.52
31664804--31664844	21	1.9	22	85	5	57	56	0	9	34	1.32
31666139--31666178	20	2.0	20	85	4	55	0	22	12	65	1.26
31670956--31670994	20	2.0	20	90	10	62	43	0	5	51	1.24
31672547--31672657	45	2.5	45	91	5	172	21	18	18	42	1.89
31672637--31672673	12	3.1	12	84	0	56	16	27	16	40	1.89
31680083--31680123	9	4.3	9	87	9	55	75	2	0	21	0.92
31680688--31680727	20	1.9	20	85	10	53	32	12	0	55	1.38
31698917--31698954	20	1.9	20	94	0	67	21	5	2	71	1.19
31700316--31700346	15	2.0	16	93	6	55	45	19	9	25	1.81
31705614--31705663	24	2.1	24	88	0	73	34	4	40	22	1.72
31707096--31707206	27	4.1	26	78	7	105	18	21	21	37	1.94
31709498--31710052	44	12.5	44	72	9	306	34	16	19	30	1.94
31709559--31709875	173	1.8	171	81	1	391	33	15	21	30	1.94
31709516--31709948	217	2.0	218	88	2	656	34	15	20	30	1.93
31709893--31709990	51	1.9	51	87	0	142	37	14	15	32	1.87
31710929--31710970	20	2.1	20	90	0	66	16	35	35	11	1.86
31711592--31711623	14	2.3	14	94	0	55	12	3	0	84	0.74
31711731--31711770	14	2.7	15	88	7	64	30	10	2	57	1.45
31717235--31717281	20	2.3	20	85	7	60	61	6	0	31	1.21
31718348--31718400	13	4.1	13	85	0	79	33	9	15	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31726850--31726893	20	2.4	18	79	17	54	34	0	11	54	1.36
31738236--31738286	10	5.0	10	74	11	50	66	0	31	1	1.03
31740231--31740302	28	2.5	31	75	13	80	43	6	2	47	1.45
31741002--31741031	3	10.0	3	100	0	60	66	0	0	33	0.92
31742559--31742604	17	2.6	17	78	21	58	69	0	30	0	0.89
31742572--31742604	14	2.3	15	85	15	52	69	0	30	0	0.88
31743368--31743400	18	1.9	18	88	11	52	27	0	18	54	1.44
31744383--31744475	18	5.1	18	69	17	66	63	3	2	31	1.22
31744281--31744476	10	20.4	9	68	14	90	61	4	4	30	1.33
31745829--31745865	9	4.3	9	83	10	51	0	8	37	54	1.30
31745829--31745865	17	2.2	17	95	0	65	0	8	37	54	1.30
31748045--31748121	36	2.1	36	100	0	154	51	7	7	32	1.59
31749203--31749241	15	2.6	15	87	0	51	12	0	33	53	1.39
31749319--31749443	34	3.6	34	79	6	128	43	0	16	40	1.48
31749504--31749866	125	2.9	126	85	4	500	38	16	15	28	1.90
31751693--31751735	18	2.4	18	88	0	59	44	9	25	20	1.81
31752318--31752342	7	3.6	7	100	0	50	60	12	0	28	1.32
31755941--31755983	15	2.9	15	89	0	68	34	4	0	60	1.17
31757125--31757188	30	2.1	30	85	5	85	28	23	14	34	1.93
31759853--31759916	33	1.9	34	87	9	96	56	4	0	39	1.20
31759859--31759913	17	3.3	17	72	10	51	60	3	0	36	1.15
31759866--31759924	17	3.5	17	69	21	52	55	3	0	40	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31760421--31760463	22	1.9	23	90	4	70	53	2	4	39	1.34
31764701--31764808	26	4.2	26	89	0	171	37	24	5	32	1.78
31765559--31766203	23	28.1	23	78	7	571	38	23	5	32	1.78
31770647--31770802	41	3.8	41	97	0	285	29	21	22	26	1.99
31771017--31771080	33	2.0	32	90	3	101	26	9	25	39	1.86
31771024--31771097	33	2.3	33	80	2	87	28	8	25	37	1.84
31774666--31774796	43	3.1	42	71	6	106	29	21	9	40	1.84
31774938--31774989	8	6.6	8	95	4	88	25	0	7	67	1.17
31774932--31774982	24	2.2	23	89	3	75	31	0	7	60	1.25
31774918--31775008	15	6.1	15	78	7	60	35	1	4	59	1.25
31774938--31775009	8	9.6	7	87	4	72	26	1	5	66	1.21
31776309--31776333	13	1.9	13	100	0	50	80	8	0	12	0.92
31776455--31776585	18	7.3	18	88	7	187	36	9	15	38	1.81
31776460--31776598	35	3.9	36	86	8	194	36	10	14	38	1.81
31776455--31776598	53	2.7	54	91	3	227	36	10	14	38	1.81
31777090--31777152	16	4.1	15	76	11	58	34	1	0	63	1.04
31778424--31778550	7	17.9	7	69	9	51	38	37	0	23	1.61
31778603--31778654	14	3.7	14	81	0	59	48	25	0	26	1.52
31778754--31778823	16	4.4	16	72	13	56	21	1	28	48	1.59
31778818--31779038	41	5.4	41	86	0	289	20	21	23	34	1.97
31778818--31779078	123	2.1	123	81	1	299	21	21	21	35	1.96
31779022--31779101	40	2.0	41	85	2	108	22	21	16	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31780110--31780153	21	2.1	21	95	0	79	63	34	0	2	1.07
31780107--31780156	11	4.6	11	76	18	52	62	36	0	2	1.07
31781218--31781289	3	24.0	3	82	0	90	33	8	0	58	1.28
31783074--31783127	26	2.3	23	77	20	58	59	1	1	37	1.19
31784137--31784184	23	2.0	24	96	4	89	50	4	8	37	1.52
31784426--31784503	41	1.9	42	84	10	108	23	24	33	19	1.97
31784588--31784630	17	2.5	17	92	0	68	25	34	32	6	1.83
31786047--31786264	47	4.8	44	77	12	174	27	18	28	25	1.98
31799458--31799888	140	3.1	139	84	1	531	27	19	20	32	1.97
31800400--31800503	52	2.0	52	100	0	208	32	15	15	36	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318