genome.fa.s5.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  161  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50901530--50901612	42	2.0	42	97	0	157	32	10	26	30	1.90
50906238--50906831	47	12.6	47	93	1	954	31	8	30	29	1.87
50906952--50907027	37	2.1	37	87	0	107	23	18	31	26	1.97
50912366--50912424	30	2.0	30	93	0	100	33	13	27	25	1.93
50914402--50914524	39	3.2	39	79	0	147	33	13	28	25	1.93
50923043--50923094	18	2.9	18	88	0	77	34	15	7	42	1.75
50924784--50924816	14	2.3	15	94	5	59	18	9	15	57	1.63
50928167--50928196	15	2.1	15	93	6	53	30	6	26	36	1.82
50928381--50928441	31	2.0	31	83	6	79	54	0	6	39	1.27
50930982--50931100	37	3.1	38	83	9	136	29	22	23	24	1.99
50933506--50933704	43	4.7	43	79	4	206	27	19	28	25	1.99
50933543--50933704	85	1.9	85	92	2	272	26	19	29	24	1.99
50933516--50933758	128	1.9	125	83	5	310	26	19	29	24	1.99
50941255--50941478	79	2.8	80	79	9	244	23	22	28	26	1.99
50941255--50941478	40	5.6	40	80	8	242	23	22	28	26	1.99
50949387--50949610	40	5.6	40	85	7	278	24	23	27	25	2.00
50956459--50956596	55	2.5	55	77	8	145	31	28	24	15	1.95
50958440--50958491	23	2.3	24	84	15	67	21	9	3	65	1.38
50962034--50962128	29	3.3	29	85	2	122	30	25	12	31	1.93
50962346--50962382	16	2.3	16	95	0	65	13	24	13	48	1.78
50971342--50971393	27	1.9	27	84	0	68	34	25	7	32	1.84
50971380--50971457	27	2.9	27	98	0	147	34	20	23	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50971375--50971487	54	2.1	53	80	4	127	35	19	21	23	1.96
50972115--50972166	27	2.0	26	84	3	68	17	26	21	34	1.95
50979090--50979171	26	3.1	27	89	5	123	34	20	24	20	1.97
50987666--50987691	13	2.0	13	100	0	52	15	30	38	15	1.88
50995545--50995590	21	2.2	21	84	0	56	78	0	2	19	0.86
50999202--50999240	16	2.4	17	91	4	62	48	35	7	7	1.61
51005421--51005592	27	6.4	27	86	0	227	35	19	20	24	1.96
51005420--51005573	81	1.9	81	93	0	263	37	20	19	22	1.95
51005593--51005646	27	2.0	26	89	3	81	22	18	20	38	1.93
51006225--51006370	71	2.1	71	89	0	220	19	26	21	33	1.97
51006791--51006829	21	1.9	21	89	5	62	28	2	10	58	1.44
51006791--51006839	21	2.4	20	80	12	55	26	2	16	55	1.52
51010333--51010499	43	3.9	43	78	5	153	35	21	17	25	1.95
51015313--51015346	12	2.8	12	95	0	59	35	8	5	50	1.58
51021912--51022096	40	4.6	39	80	6	185	25	28	22	23	1.99
51021914--51022096	79	2.3	80	81	9	196	25	27	22	24	2.00
51031191--51031413	40	5.6	40	85	3	236	26	27	21	24	1.99
51031345--51031422	40	1.9	41	82	10	97	26	28	21	23	1.99
51039088--51039254	39	4.2	40	89	3	223	26	28	20	23	1.99
51039086--51039254	79	2.2	77	84	3	221	27	28	20	23	1.99
51057714--51057935	40	5.7	40	85	9	257	24	27	22	25	2.00
51057714--51057935	117	1.9	118	82	11	287	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51065668--51065891	40	5.7	40	86	6	269	25	27	21	25	2.00
51065668--51065889	118	1.9	119	83	8	292	25	27	21	25	1.99
51066971--51066995	13	1.9	13	100	0	50	0	8	4	88	0.64
51075149--51075367	40	5.6	40	85	7	261	24	27	21	26	2.00
51075149--51075364	79	2.7	77	80	7	238	25	26	21	26	2.00
51082896--51083115	40	5.6	40	86	7	263	25	27	21	25	2.00
51082896--51083112	79	2.7	77	81	9	240	25	26	21	26	2.00
51090658--51090877	40	5.6	40	86	7	263	25	27	21	25	2.00
51090658--51090874	79	2.7	77	81	9	240	25	26	21	26	2.00
51093914--51093976	26	2.3	27	83	8	83	36	25	11	26	1.90
51094084--51094195	27	4.1	27	87	3	145	18	22	22	36	1.95
51103991--51104163	56	3.1	55	92	3	274	29	9	34	26	1.88
51105595--51105670	37	2.1	37	100	0	152	28	21	14	35	1.92
51106769--51106947	49	3.6	49	79	5	225	31	25	17	25	1.97
51106768--51106950	100	1.8	100	90	0	294	31	25	18	25	1.97
51107199--51107252	27	2.0	27	85	0	72	38	14	5	40	1.70
51118626--51118908	50	5.6	50	78	5	259	25	14	26	33	1.95
51118679--51118908	101	2.3	100	84	0	289	24	15	26	32	1.95
51119033--51119069	18	2.1	18	100	0	74	32	5	40	21	1.76
51129881--51130152	47	5.7	47	92	2	420	31	8	30	28	1.87
51129881--51130152	96	2.9	94	91	3	420	31	8	30	28	1.87
51129881--51130152	143	1.9	141	90	3	429	31	8	30	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51130271--51130349	37	2.1	37	88	4	115	25	18	30	25	1.98
51132755--51132815	32	1.9	32	86	6	88	42	24	16	16	1.88
51144312--51144499	59	3.2	59	66	11	150	41	3	3	51	1.35
51144301--51144589	119	2.4	120	93	2	492	43	2	4	50	1.34
51144421--51144476	15	3.5	18	75	24	63	42	0	0	57	0.99
51144375--51144557	56	3.1	58	66	23	146	42	2	6	49	1.39
51144541--51144575	18	2.0	17	88	5	52	45	0	0	54	0.99
51144529--51144802	147	1.9	148	93	2	480	47	3	3	45	1.36
51144688--51144722	18	2.0	17	88	5	52	45	0	0	54	0.99
51144883--51144977	45	2.1	44	84	1	118	34	25	5	34	1.78
51144958--51145025	16	4.2	16	92	0	100	38	33	0	27	1.57
51145944--51146138	68	2.8	68	89	3	248	22	30	15	31	1.95
51145993--51146138	68	2.1	68	98	0	283	23	30	14	30	1.94
51145993--51146164	68	2.5	67	91	5	249	23	29	14	33	1.94
51150996--51151181	39	4.6	39	84	9	200	24	27	22	25	2.00
51150996--51151181	80	2.3	82	81	11	217	24	27	22	25	2.00
51158995--51159179	79	2.3	82	83	9	231	25	27	21	25	1.99
51158995--51159179	40	4.6	41	81	9	222	25	27	21	25	1.99
51164732--51164877	68	2.1	68	97	0	274	23	31	14	30	1.94
51164732--51164903	68	2.5	67	89	5	240	23	29	14	32	1.94
51169652--51169682	15	2.1	15	100	0	62	19	6	19	54	1.65
51171107--51171237	27	4.9	27	73	5	113	29	9	22	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51175150--51175206	30	1.9	30	89	7	89	40	5	24	29	1.77
51175973--51176254	101	2.8	101	84	3	345	24	17	26	31	1.97
51175977--51176254	151	1.8	153	91	3	463	24	16	26	32	1.96
51175973--51176254	50	5.6	50	82	5	327	24	17	26	31	1.97
51178121--51178184	20	3.3	20	86	4	87	23	31	34	10	1.89
51180245--51180389	40	3.6	40	85	4	184	25	24	26	24	2.00
51191471--51191520	15	3.4	15	86	2	66	60	12	18	10	1.59
51191482--51191529	15	3.2	15	79	5	53	56	14	16	12	1.68
51204147--51204374	40	5.7	40	90	3	343	25	26	23	25	2.00
51210302--51210336	18	2.0	17	88	5	52	45	0	0	54	0.99
51210446--51210480	18	2.0	17	88	5	52	45	0	0	54	0.99
51210642--51210736	45	2.1	45	88	1	138	32	27	5	34	1.79
51210715--51210747	16	2.1	16	94	0	57	30	36	0	33	1.58
51210728--51210770	21	2.0	21	95	0	77	34	37	0	27	1.57
51211555--51211590	10	3.6	10	85	14	56	75	2	13	8	1.15
51217255--51217368	43	2.7	43	78	6	108	30	27	16	25	1.97
51221183--51221258	28	2.7	28	97	0	143	25	27	27	19	1.99
51221407--51221482	26	2.9	27	74	5	84	40	22	17	19	1.91
51225291--51225368	26	3.0	27	83	7	106	39	25	17	16	1.91
51225800--51225844	19	2.5	18	79	10	56	24	44	24	6	1.77
51232930--51233119	42	4.4	44	80	9	214	33	23	16	26	1.95
51232925--51233119	86	2.3	86	90	2	304	32	23	16	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51240662--51240780	42	2.8	43	82	6	152	35	24	13	26	1.93
51240605--51240780	86	2.0	86	87	2	255	33	22	16	27	1.95
51240651--51240780	44	3.0	44	78	7	149	33	23	15	27	1.95
51241204--51241246	20	2.2	19	83	4	50	37	18	4	39	1.72
51255611--51255804	40	4.9	40	93	0	327	26	22	28	22	1.99
51255611--51255831	80	2.8	80	88	2	331	27	23	27	22	1.99
51258121--51258288	40	4.2	40	79	8	112	27	26	20	25	1.99
51258158--51258288	40	3.3	39	83	4	172	28	25	20	25	1.99
51258156--51258341	80	2.3	79	82	11	211	27	26	20	24	1.99
51266039--51266206	40	4.2	40	82	8	148	27	27	20	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318