genome.fa.s5.2.7.7.80.10.50.1000.303.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  303  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96132889--96133157	98	2.7	98	91	0	439	34	14	22	28	1.94
96133121--96133266	37	4.0	37	91	1	233	37	15	21	24	1.93
96135569--96135609	21	2.0	21	90	0	64	29	21	29	19	1.98
96140099--96140135	12	3.2	12	88	11	51	27	0	0	72	0.84
96158429--96159093	44	15.2	45	77	6	650	28	16	25	30	1.96
96158429--96159093	132	5.1	132	97	1	1250	28	16	25	30	1.96
96161273--96161316	18	2.3	20	81	18	58	31	15	0	52	1.44
96163696--96163852	37	4.0	37	82	14	199	26	21	15	36	1.93
96163769--96164135	46	7.6	46	86	7	437	29	22	14	34	1.93
96163812--96164129	52	6.3	52	86	7	417	28	22	13	34	1.93
96163769--96164121	196	1.8	196	92	0	598	28	22	14	34	1.93
96163769--96164135	98	3.7	97	84	9	492	29	22	14	34	1.93
96166873--96167036	88	1.9	88	90	1	267	36	20	21	21	1.95
96166829--96167024	43	4.5	43	75	9	148	34	22	21	21	1.97
96167408--96167514	43	2.5	42	81	1	106	39	22	17	20	1.93
96169141--96169173	11	2.8	12	90	9	50	21	3	6	69	1.24
96169247--96169298	21	2.4	22	90	3	79	32	1	7	57	1.38
96176156--96176207	20	2.5	20	79	14	61	28	13	7	50	1.69
96180832--96180874	21	2.0	21	100	0	86	41	9	13	34	1.77
96181323--96181383	28	2.1	29	81	3	70	31	6	1	60	1.32
96185556--96185605	25	2.0	25	100	0	100	48	0	16	36	1.46
96185801--96185841	15	2.7	15	88	0	55	63	7	2	26	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96185836--96185890	28	2.0	28	92	3	94	45	7	10	36	1.67
96192731--96192780	17	3.0	16	80	8	55	70	6	8	16	1.32
96193140--96193223	35	2.4	35	75	18	95	40	1	2	55	1.20
96194307--96194414	45	2.5	46	82	7	127	22	25	16	36	1.94
96204456--96204600	43	3.4	43	82	1	157	31	25	18	24	1.97
96204467--96204582	42	2.7	43	86	1	153	28	24	18	28	1.98
96208387--96208430	16	2.8	16	80	16	56	25	0	2	72	0.96
96209090--96209121	7	4.6	7	96	0	55	40	31	12	15	1.85
96209113--96209175	14	4.4	14	78	7	65	31	47	1	19	1.59
96209183--96209218	15	2.5	14	82	8	54	47	30	0	22	1.52
96209258--96209424	41	4.1	40	85	4	192	21	22	21	34	1.97
96209258--96209424	81	2.0	82	81	5	196	21	22	21	34	1.97
96209817--96209898	22	3.6	22	70	22	71	36	4	6	52	1.48
96209817--96209915	25	4.1	22	71	13	63	36	5	7	51	1.51
96212778--96212952	46	3.8	46	76	13	169	29	27	20	22	1.99
96212786--96212956	93	1.8	93	88	0	261	28	27	21	22	1.99
96216346--96216599	46	5.6	46	85	4	329	22	29	21	26	1.99
96216346--96216599	138	1.9	136	87	5	377	22	29	21	26	1.99
96216346--96216599	92	2.8	92	93	2	415	22	29	21	26	1.99
96228925--96228993	31	2.3	31	85	7	88	44	23	8	23	1.80
96232971--96233030	30	2.0	30	93	0	102	46	16	16	20	1.84
96235797--96235836	21	1.9	21	84	0	53	40	22	20	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96237749--96237820	30	2.4	30	88	4	101	44	16	16	22	1.86
96240499--96240539	21	2.0	21	90	0	64	19	29	21	29	1.98
96248114--96248212	44	2.2	44	82	7	112	30	19	6	44	1.74
96269296--96269472	46	3.8	46	76	14	173	29	29	20	20	1.98
96269304--96269476	93	1.8	95	88	2	269	28	29	20	20	1.98
96272795--96272950	44	3.5	45	85	7	173	22	30	20	26	1.98
96296010--96296049	20	2.0	21	90	5	64	20	30	22	27	1.98
96302005--96302062	31	1.9	30	85	3	80	36	8	10	44	1.69
96302607--96302658	24	2.2	24	83	10	63	50	5	0	44	1.26
96303785--96303886	45	2.3	45	81	6	109	29	19	5	45	1.74
96305171--96305235	33	2.0	33	96	0	121	20	12	20	47	1.81
96306879--96306940	31	2.0	31	84	6	81	54	8	8	29	1.58
96310517--96310559	18	2.6	16	85	10	59	51	2	0	46	1.13
96312613--96312638	13	2.0	13	100	0	52	46	23	7	23	1.78
96322915--96323020	26	4.1	26	91	2	169	35	22	7	33	1.83
96334376--96334473	19	5.2	19	91	7	155	37	11	15	35	1.83
96334366--96334473	36	2.9	35	76	20	103	37	11	14	36	1.82
96336439--96336495	25	2.3	25	87	3	80	66	3	0	29	1.08
96336422--96336508	11	7.8	11	75	10	79	65	4	1	28	1.19
96336434--96336513	19	4.2	19	73	12	67	67	3	1	27	1.15
96339473--96339528	28	2.0	28	100	0	112	39	10	21	28	1.87
96339701--96339726	13	2.0	13	100	0	52	38	7	23	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96339770--96339824	26	2.1	26	100	0	110	30	9	18	41	1.81
96339777--96339819	13	3.3	13	75	12	52	32	4	18	44	1.71
96342455--96342492	19	2.0	19	89	0	58	42	26	5	26	1.76
96344225--96344296	4	17.2	4	76	18	58	73	2	20	2	1.08
96344224--96344301	21	3.4	23	78	18	74	73	2	21	2	1.08
96344965--96345012	24	2.0	24	84	15	64	31	0	16	52	1.45
96345424--96345516	46	2.0	46	100	0	186	43	8	12	35	1.74
96345439--96345510	22	3.2	22	63	33	53	44	8	11	36	1.70
96351495--96351534	19	2.0	20	86	13	57	62	15	0	22	1.32
96354850--96354889	19	2.0	20	86	13	57	62	15	0	22	1.32
96355249--96355289	21	2.0	21	90	0	64	26	21	26	24	2.00
96356461--96356508	6	8.3	6	77	9	55	2	16	0	81	0.79
96356461--96356513	18	2.7	19	83	16	65	1	16	0	81	0.79
96356461--96356507	11	4.2	11	81	5	58	2	17	0	80	0.80
96356477--96356515	11	3.5	11	86	6	51	0	15	0	84	0.62
96357607--96357670	21	3.2	21	73	13	80	40	21	25	12	1.88
96357600--96357688	39	2.3	39	94	0	151	40	22	22	14	1.90
96357635--96357707	21	3.7	19	78	14	76	39	20	23	16	1.92
96362346--96362458	53	2.3	50	85	10	144	30	27	15	26	1.95
96362367--96362526	52	3.1	51	79	8	178	31	27	16	25	1.96
96367280--96367319	20	2.0	20	100	0	80	35	10	20	35	1.86
96373775--96373820	23	2.0	23	84	12	60	45	10	6	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96374762--96374885	42	3.0	42	81	5	128	30	24	12	32	1.93
96374985--96375102	31	3.8	31	91	0	191	27	27	19	25	1.99
96375078--96375254	50	3.5	50	92	0	282	25	21	16	36	1.94
96378576--96378604	14	2.1	14	100	0	58	44	6	13	34	1.71
96384708--96384753	23	2.0	23	84	12	60	45	10	6	36	1.65
96384715--96384759	23	2.0	23	82	8	56	40	13	8	37	1.76
96395039--96395094	26	2.2	25	80	3	67	53	1	1	42	1.21
96399038--96399075	6	6.3	6	100	0	76	31	0	0	68	0.90
96409822--96409881	30	2.0	30	100	0	120	36	23	13	26	1.92
96410290--96410319	14	2.1	14	93	0	51	56	6	16	20	1.62
96411206--96411248	19	2.3	19	80	8	52	51	4	13	30	1.62
96413027--96413198	75	2.4	73	82	8	217	34	23	11	30	1.90
96413033--96413198	35	4.6	35	81	8	199	34	24	11	30	1.90
96415315--96415365	3	17.0	3	100	0	102	0	33	0	66	0.92
96417465--96417612	43	3.4	43	75	9	131	28	16	25	29	1.97
96425482--96425713	49	4.7	49	81	5	277	29	27	18	25	1.98
96425482--96425713	100	2.3	98	83	4	286	29	27	18	25	1.98
96429452--96429511	27	2.2	28	84	3	77	51	6	6	35	1.54
96429845--96429910	28	2.2	30	84	7	82	63	1	6	28	1.27
96430076--96430121	3	16.0	3	86	8	69	65	2	0	32	1.05
96430076--96430120	11	4.0	11	91	2	72	64	2	0	33	1.06
96430048--96430126	14	5.7	14	73	21	69	62	7	1	29	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96432594--96432632	19	2.1	18	85	9	51	76	2	20	0	0.90
96433696--96433838	27	5.3	26	87	4	160	35	23	23	17	1.95
96433696--96433836	54	2.6	55	86	2	187	35	22	24	17	1.95
96434578--96434685	54	2.0	54	100	0	216	37	24	11	27	1.89
96435494--96435603	26	4.2	26	97	0	184	36	24	5	33	1.79
96435599--96435623	10	2.5	10	100	0	50	32	12	8	48	1.69
96440361--96440411	26	2.0	26	88	7	77	45	0	5	49	1.26
96440363--96440418	26	2.2	26	83	6	69	48	0	5	46	1.25
96441603--96441633	15	2.1	15	93	0	53	35	0	12	51	1.40
96442784--96443291	131	3.9	130	81	4	502	34	16	20	28	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318