Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  86  of  318  ( 38109 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29305278--29305402
23
5.4
22
77
15
94
22
3
2
72
1.11
29310532--29310593
22
2.8
21
87
4
88
82
0
6
11
0.84
29310531--29310605
14
5.1
14
72
18
55
81
0
9
9
0.88
29311226--29311275
10
5.0
10
81
13
59
22
8
2
68
1.26
29315399--29315466
26
2.6
25
80
13
59
48
1
1
48
1.19
29316630--29316722
18
5.2
17
70
21
59
16
7
3
73
1.20
29316670--29316743
36
2.0
36
85
12
98
21
5
4
68
1.26
29316697--29316744
18
2.7
17
75
9
51
27
4
2
66
1.21
29317117--29317159
11
4.0
11
75
6
52
51
0
0
48
1.00
29317301--29317368
26
2.6
26
83
6
84
48
4
1
45
1.31
29317495--29317538
21
2.1
21
84
16
56
36
2
0
61
1.09
29317623--29317652
12
2.5
12
94
0
51
56
0
0
43
0.99
29317624--29317665
18
2.3
19
91
4
68
54
0
0
45
0.99
29320656--29320728
30
2.4
30
83
0
92
26
23
21
28
1.99
29322213--29322254
20
2.1
20
100
0
84
40
14
14
30
1.85
29324189--29324230
14
3.3
13
78
15
52
38
0
2
59
1.10
29324237--29324330
10
9.7
10
72
18
58
42
3
1
53
1.24
29324996--29325121
37
3.5
36
76
8
114
54
2
1
41
1.23
29325091--29325177
22
4.0
21
69
23
63
56
2
0
41
1.12
29325089--29325179
23
4.1
22
72
13
62
54
2
0
42
1.12
29325162--29325213
18
2.9
18
80
5
61
67
0
3
28
1.08
29325250--29325291
9
4.8
9
91
5
68
78
0
9
11
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29341650--29341884
39
6.0
39
80
8
205
31
27
20
20
1.97
29341669--29341884
78
2.7
78
84
4
247
31
26
20
21
1.98
29348274--29348490
39
5.5
39
89
2
285
30
28
21
19
1.98
29350575--29350737
22
7.5
22
69
9
91
42
18
0
38
1.55
29350570--29350820
109
2.3
109
88
1
360
43
18
0
37
1.56
29350777--29350820
22
2.0
22
90
0
70
38
15
0
45
1.47
29350705--29350832
30
4.4
29
70
12
102
44
17
0
37
1.54
29350845--29350893
22
2.3
21
89
6
73
51
16
0
32
1.45
29350706--29350909
87
2.4
85
81
7
225
45
16
0
37
1.52
29350878--29350930
22
2.4
22
83
0
70
41
15
0
43
1.46
29350963--29351029
24
2.8
24
80
11
75
40
22
2
34
1.69
29350777--29350971
107
1.8
106
87
5
277
43
18
0
37
1.54
29359359--29359410
22
2.4
22
81
9
54
65
3
11
19
1.40
29362648--29362680
16
2.1
16
94
0
57
30
3
12
54
1.52
29362648--29362688
16
2.7
15
85
10
50
29
2
12
56
1.49
29364994--29365074
41
2.0
41
100
0
162
34
2
24
38
1.69
29365226--29365275
17
2.9
16
82
11
55
56
6
14
24
1.60
29365987--29366148
74
2.2
74
97
0
306
56
9
1
32
1.43
29371705--29371744
2
20.0
2
100
0
80
0
50
0
50
1.00
29380327--29380390
32
2.0
31
82
8
76
34
3
3
59
1.29
29382380--29382433
24
2.2
24
78
12
65
46
5
31
16
1.70
29388365--29388418
19
2.7
20
75
16
58
29
3
3
62
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29394206--29394259
21
2.4
23
84
9
67
53
7
1
37
1.40
29400625--29400661
20
2.0
20
89
10
60
29
8
0
62
1.24
29402142--29402186
21
2.1
21
100
0
90
42
13
17
26
1.86
29405515--29407074
779
2.0
779
99
0
3095
47
9
11
31
1.72
29408414--29409328
72
12.6
72
83
7
963
31
21
16
30
1.95
29408414--29409328
147
6.3
146
83
7
982
31
21
16
30
1.95
29408419--29409315
221
4.1
218
86
5
1092
31
21
16
30
1.96
29409142--29409323
68
2.9
61
78
10
220
26
28
18
27
1.98
29409292--29409397
54
1.9
54
85
9
144
37
19
15
27
1.92
29409261--29409732
140
3.4
140
97
0
881
36
21
16
25
1.94
29409432--29409537
54
1.9
54
85
9
144
37
19
15
27
1.92
29409572--29409677
54
1.9
54
83
9
135
38
17
15
28
1.90
29409668--29409833
72
2.3
71
84
8
212
42
20
14
22
1.88
29409832--29410007
71
2.5
70
81
3
194
35
22
12
29
1.91
29416933--29417025
39
2.5
37
80
7
98
27
29
22
20
1.98
29417380--29417418
3
13.0
3
100
0
78
66
0
0
33
0.92
29418125--29418159
16
2.2
16
89
0
52
2
14
8
74
1.17
29418163--29418240
15
4.9
17
65
22
53
50
1
0
48
1.09
29418165--29418205
14
2.6
17
85
14
61
53
0
0
46
1.00
29418185--29418223
12
3.4
11
80
13
51
46
2
0
51
1.14
29418159--29418239
24
3.4
24
77
13
87
49
1
0
49
1.08
29424228--29424320
39
2.5
37
80
7
98
27
29
22
20
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29424675--29424710
3
12.0
3
100
0
72
66
0
0
33
0.92
29425417--29425451
16
2.2
16
89
0
52
2
14
8
74
1.17
29425455--29425532
15
4.9
17
65
22
53
50
1
0
48
1.09
29425457--29425497
14
2.6
17
85
14
61
53
0
0
46
1.00
29425477--29425515
12
3.4
11
80
13
51
46
2
0
51
1.14
29425451--29425531
24
3.4
24
77
13
87
49
1
0
49
1.08
29430628--29430677
23
2.2
22
89
6
82
4
2
18
76
1.04
29435494--29435522
11
2.6
11
100
0
58
37
17
27
17
1.92
29436068--29436105
12
3.0
13
84
3
51
71
0
0
28
0.87
29438947--29439007
31
2.0
31
93
0
104
47
9
8
34
1.66
29440786--29440872
30
2.9
30
87
3
122
27
45
5
20
1.74
29441358--29441409
24
2.2
23
83
10
61
36
3
0
59
1.16
29441434--29441496
25
2.5
26
80
12
78
34
4
3
57
1.36
29441509--29441575
25
2.9
22
78
10
71
29
5
5
58
1.46
29441515--29441601
24
3.5
24
77
12
70
31
5
5
57
1.46
29441570--29441618
23
2.1
23
85
7
64
30
8
4
57
1.47
29441731--29441778
16
3.1
15
87
6
60
31
4
2
62
1.26
29441731--29441782
8
6.5
8
78
8
52
30
3
1
63
1.23
29442877--29442941
32
2.0
32
100
0
130
43
12
6
38
1.67
29445435--29445480
22
2.1
22
84
8
58
47
8
2
41
1.46
29446381--29446429
23
2.1
23
96
0
89
30
16
10
42
1.81
29447885--29447952
20
3.4
20
75
0
64
30
19
33
16
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29447909--29447969
20
3.0
20
77
13
63
22
16
39
21
1.92
29447964--29448079
40
2.9
40
85
0
142
37
13
27
21
1.91
29453612--29453642
11
2.7
12
95
5
55
38
0
3
58
1.15
29454375--29454550
46
3.8
46
78
12
207
21
21
28
28
1.98
29454372--29454543
93
1.8
93
94
0
308
21
21
29
27
1.99
29455511--29455556
24
2.0
23
82
4
56
41
10
19
28
1.85
29462504--29462534
12
2.6
12
94
0
53
32
0
3
64
1.09
29462550--29462586
13
2.9
13
88
11
51
29
8
5
56
1.51
29467117--29467157
7
6.0
7
81
16
50
60
2
0
36
1.10
29473496--29473520
3
8.3
3
100
0
50
64
0
0
36
0.94
29480815--29481044
115
2.0
115
99
0
451
46
14
20
18
1.84
29484072--29484138
31
2.2
30
89
5
100
32
10
13
43
1.78
29484072--29484151
31
2.7
29
86
5
88
33
8
12
45
1.73
29484310--29484403
31
3.1
29
80
6
89
41
15
9
32
1.80
29485308--29485377
23
3.2
23
67
19
67
42
12
8
35
1.74
29485288--29485379
43
2.1
43
95
0
166
40
11
8
39
1.73
29489442--29489530
18
4.9
18
88
0
124
30
23
14
31
1.94
29489440--29489530
36
2.5
36
90
0
146
29
23
15
31
1.95
29499404--29499762
46
7.8
46
92
0
504
39
13
24
21
1.90
29500963--29500991
13
2.2
13
100
0
58
44
6
10
37
1.65
29513196--29513310
57
2.0
57
87
0
167
36
13
18
31
1.90
29514753--29514812
31
1.9
31
93
0
102
33
13
11
41
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29514815--29514846
16
2.0
16
93
0
55
18
15
12
53
1.73
29515753--29515836
35
2.4
35
93
0
141
45
11
7
35
1.69
29517028--29517067
11
3.6
11
82
0
53
60
10
10
20
1.57
29526277--29526315
16
2.4
17
83
16
55
71
2
5
20
1.17
29529656--29529732
34
2.3
34
84
4
102
31
22
18
28
1.97
29536081--29536146
34
1.9
34
84
6
89
28
18
22
30
1.97
29543156--29543210
26
2.1
27
86
10
78
54
9
7
29
1.58
29544912--29544957
4
11.5
4
100
0
92
26
0
23
50
1.50
29547013--29547050
17
2.2
18
90
4
60
57
2
2
36
1.26
29549005--29549072
9
7.7
9
71
15
61
32
2
2
61
1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318