genome.fa.s5.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  187  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58637053--58637117	27	2.4	27	82	5	69	32	23	23	21	1.98
58637386--58637742	27	13.3	27	86	1	457	25	21	19	34	1.96
58637792--58637896	27	3.9	27	81	5	106	31	10	20	38	1.86
58637778--58638011	54	4.4	54	84	4	242	29	10	22	37	1.87
58637835--58638011	79	2.2	80	87	2	248	29	9	22	38	1.85
58637835--58638011	27	6.6	27	87	2	250	29	9	22	38	1.85
58644069--58644133	32	2.0	32	100	0	130	26	18	21	33	1.96
58645749--58645803	27	2.0	27	100	0	110	45	25	10	18	1.82
58652843--58652999	42	3.7	43	75	9	151	25	22	21	31	1.98
58652843--58653013	44	4.0	42	73	9	148	26	21	20	32	1.97
58656725--58656946	40	5.6	40	86	3	288	22	27	23	27	1.99
58664805--58665032	40	5.7	40	85	3	291	23	27	22	27	1.99
58678791--58678909	27	4.4	27	85	0	157	35	19	21	24	1.96
58679562--58679613	27	2.0	26	84	3	68	17	26	21	34	1.95
58679652--58679711	27	2.3	26	82	2	66	21	20	20	38	1.94
58683278--58683447	40	4.3	40	87	0	207	26	28	20	24	1.99
58683276--58683500	80	2.8	79	81	3	227	26	28	20	24	1.99
58683278--58683493	40	5.4	39	79	8	150	26	27	19	25	1.99
58683432--58683509	40	1.9	41	82	10	97	26	28	21	23	1.99
58691157--58691326	40	4.3	40	89	0	216	25	28	21	24	1.99
58691155--58691379	80	2.8	79	81	3	236	26	28	20	24	1.99
58691157--58691372	40	5.4	39	80	8	159	26	27	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58691311--58691388	40	1.9	41	82	10	97	26	28	21	23	1.99
58694713--58694791	37	2.1	37	90	0	122	25	31	18	24	1.98
58694909--58695017	49	2.3	47	91	4	173	29	31	7	32	1.85
58695288--58695345	24	2.5	23	81	16	66	32	5	0	62	1.18
58702091--58702221	54	2.4	54	82	2	147	27	28	24	19	1.99
58713824--58713999	46	3.8	46	77	14	182	21	19	28	30	1.97
58713821--58713990	93	1.8	93	92	2	288	21	20	28	29	1.98
58727202--58727418	39	5.6	40	89	5	313	22	27	23	27	1.99
58727202--58727418	79	2.8	78	88	6	332	22	27	23	27	1.99
58735272--58735492	40	5.6	40	92	2	340	21	27	23	26	1.99
58750853--58750997	40	3.6	40	84	4	184	25	24	26	24	2.00
58754309--58754368	29	2.0	29	87	3	84	36	6	25	31	1.82
58754794--58754966	46	3.7	46	78	11	201	23	21	26	28	1.99
58754791--58754961	93	1.8	93	93	2	299	22	21	27	28	1.99
58756407--58756466	31	1.9	31	93	0	102	25	21	16	36	1.94
58756687--58756758	26	2.8	26	95	2	128	25	23	25	26	2.00
58757652--58757849	27	7.3	27	77	7	159	32	7	19	39	1.80
58757632--58757839	54	3.8	54	78	7	177	30	7	20	40	1.81
58757629--58757851	83	2.7	83	79	3	227	32	8	20	39	1.82
58758866--58758951	27	3.2	26	87	8	118	12	24	23	39	1.89
58760689--58760862	45	3.9	45	83	5	205	24	20	28	27	1.99
58763839--58764103	40	6.6	39	87	6	334	25	28	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58770488--58770672	79	2.3	81	82	7	218	24	22	28	24	1.99
58770488--58770672	40	4.7	40	82	6	216	24	22	28	24	1.99
58770541--58770705	79	2.1	79	82	6	192	26	20	27	24	1.99
58778511--58778691	40	4.6	40	80	9	192	24	22	27	24	2.00
58778560--58778714	79	2.0	79	83	7	199	26	21	27	25	1.99
58784784--58784812	14	2.0	15	93	6	51	79	0	0	20	0.74
58792601--58792655	24	2.3	24	87	3	76	18	25	23	32	1.97
58795863--58796128	39	6.8	39	90	0	397	24	27	25	23	2.00
58801637--58801818	40	4.6	40	83	9	212	24	21	28	25	1.99
58801687--58801841	79	2.0	79	84	7	208	25	21	27	25	1.99
58807312--58807351	21	2.0	20	85	5	53	40	17	0	42	1.49
58809224--58809262	12	3.2	12	85	0	51	17	41	10	30	1.83
58810992--58811442	27	16.7	27	75	7	162	36	21	9	32	1.86
58811072--58811172	28	3.6	28	85	4	116	40	20	8	29	1.83
58811058--58811444	27	14.3	27	75	6	165	36	20	9	32	1.86
58811475--58811539	27	2.4	27	82	5	78	35	15	24	24	1.94
58811855--58811893	21	1.9	21	89	5	62	20	20	35	23	1.96
58812247--58812330	20	4.2	20	92	3	134	40	10	17	30	1.84
58812383--58812517	52	2.7	51	88	6	197	28	20	23	27	1.99
58812383--58812517	26	5.3	26	84	4	163	28	20	23	27	1.99
58813318--58813396	37	2.1	37	90	0	122	25	31	18	24	1.98
58813515--58813980	47	9.7	47	92	3	736	29	29	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58813515--58813959	49	9.3	49	93	3	739	29	29	8	32	1.87
58813515--58813980	96	4.9	95	94	2	749	29	29	8	32	1.87
58813515--58813959	145	3.1	143	94	2	759	29	29	8	32	1.87
58816654--58816736	31	2.7	31	92	3	143	27	16	27	27	1.97
58820306--58820447	40	3.6	40	91	2	216	24	22	26	26	2.00
58823182--58823241	31	1.9	31	86	0	84	25	21	15	38	1.92
58823449--58823529	24	3.4	24	89	5	128	28	23	19	28	1.98
58823456--58823528	23	3.1	23	92	2	119	30	21	20	27	1.98
58823580--58823618	20	2.0	20	94	0	69	30	20	15	33	1.94
58823581--58823625	20	2.2	20	88	0	63	31	22	15	31	1.95
58825775--58825848	29	2.6	29	86	4	96	25	31	16	27	1.96
58828144--58828368	79	2.8	80	81	11	255	27	22	25	24	2.00
58828144--58828368	40	5.7	40	85	5	253	27	22	25	24	2.00
58828197--58828401	79	2.6	79	81	9	197	28	20	25	24	1.99
58846304--58846378	15	5.0	15	83	0	87	13	16	14	56	1.69
58852722--58852752	14	2.2	14	94	0	53	48	12	0	38	1.42
58857474--58857542	6	11.3	6	73	14	61	49	14	17	18	1.80
58857488--58857570	31	2.7	31	78	0	94	45	14	20	19	1.85
58857710--58857817	27	4.0	26	80	5	90	36	20	22	21	1.96
58857976--58858040	22	3.0	22	75	8	69	30	21	26	21	1.98
58858428--58858569	27	5.3	27	86	0	203	26	21	19	33	1.96
58858617--58858857	27	9.0	26	82	11	145	31	8	19	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58858643--58858865	27	8.3	27	84	4	270	30	8	20	40	1.82
58860820--58860888	6	11.3	6	76	14	70	49	15	18	15	1.80
58860834--58860916	31	2.7	31	84	0	103	45	14	21	18	1.84
58860878--58860933	25	2.2	25	83	0	67	44	10	21	23	1.83
58862902--58862999	28	3.5	28	90	2	135	33	28	12	25	1.92
58865259--58865374	27	4.3	27	86	3	162	25	18	19	35	1.95
58865259--58865374	54	2.1	56	92	4	193	25	18	19	35	1.95
58865357--58865555	80	2.5	81	87	0	274	30	7	21	41	1.79
58865357--58865563	27	7.7	27	88	2	247	29	6	21	41	1.79
58867963--58868084	51	2.4	51	83	4	138	28	28	14	27	1.95
58868110--58868239	50	2.6	50	80	4	145	33	26	14	25	1.95
58869753--58869784	12	2.8	11	90	9	55	81	3	0	15	0.82
58872468--58872543	37	2.1	37	100	0	152	32	15	13	38	1.86
58876204--58876257	24	2.2	24	84	12	67	29	37	16	16	1.91
58883932--58883985	24	2.2	24	84	12	67	29	37	16	16	1.91
58885027--58885155	49	2.6	50	79	6	147	22	24	20	31	1.98
58885161--58885301	48	3.0	46	80	8	158	22	28	17	31	1.97
58885168--58885341	48	3.7	45	78	9	136	22	28	18	29	1.98
58890030--58890068	18	2.2	18	95	0	69	28	17	30	23	1.97
58890081--58890173	42	2.2	42	83	7	109	29	24	16	30	1.96
58890126--58890402	48	5.8	48	91	0	446	29	24	19	26	1.98
58890382--58890466	37	2.3	37	87	0	116	28	24	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58895571--58895711	48	2.9	48	88	1	210	32	31	17	18	1.94
58906064--58906123	29	2.0	29	83	3	75	31	23	8	36	1.84
58909242--58909370	43	3.0	43	73	17	108	26	15	27	30	1.96
58910474--58910517	19	2.4	18	85	7	54	40	9	0	50	1.34
58911037--58911069	13	2.6	13	90	4	50	48	12	0	39	1.40
58914972--58915037	20	3.3	20	93	0	114	15	31	30	22	1.95
58916431--58916515	43	2.0	43	92	0	143	27	32	20	20	1.97
58920533--58920670	40	3.5	39	91	4	206	23	24	28	23	2.00
58925639--58925681	17	2.5	17	80	3	50	46	9	4	39	1.57
58945952--58946007	26	2.2	25	96	3	103	32	10	25	32	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318