genome.fa.s5.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  148  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45996525--45996608	42	2.0	42	100	0	168	40	9	9	40	1.70
45997067--45997105	20	2.0	20	89	0	60	35	17	17	28	1.94
45999376--45999558	49	3.8	49	77	10	173	25	18	31	24	1.97
46020281--46020425	71	2.0	71	97	0	272	24	18	26	29	1.98
46027130--46027233	51	2.0	51	88	0	154	38	16	9	35	1.81
46028187--46028263	29	2.7	28	80	11	93	32	20	12	33	1.91
46030904--46030968	28	2.3	28	94	0	112	33	27	7	30	1.85
46031073--46031161	27	3.2	27	81	9	101	19	24	24	31	1.98
46031624--46031662	19	2.1	19	85	0	51	15	5	7	71	1.26
46032246--46032279	10	3.3	10	84	8	50	29	8	8	52	1.62
46038776--46038840	28	2.3	28	94	0	112	33	27	7	30	1.85
46038946--46039019	27	2.7	27	79	6	87	20	24	22	32	1.98
46039501--46039539	19	2.1	19	85	0	51	15	5	7	71	1.26
46040140--46040176	11	3.5	11	82	14	51	40	10	0	48	1.38
46040129--46040180	20	2.7	19	85	5	68	42	9	0	48	1.36
46040152--46040183	15	2.1	16	94	5	57	37	9	0	53	1.34
46042574--46043005	215	2.0	215	98	0	837	33	26	11	29	1.91
46043703--46043729	12	2.2	12	100	0	54	48	0	7	44	1.31
46046302--46046441	24	5.8	24	79	11	128	26	21	21	30	1.98
46046310--46046400	21	3.9	24	80	13	109	25	18	21	34	1.96
46046335--46046441	25	4.6	23	80	12	103	26	20	22	30	1.98
46054325--46054586	39	6.7	40	87	7	319	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46057868--46058013	40	3.7	40	94	0	240	28	26	22	23	1.99
46060500--46060534	18	1.9	18	94	0	61	25	28	2	42	1.69
46065576--46065604	13	2.2	13	100	0	58	55	13	0	31	1.39
46071114--46071192	25	3.3	25	61	10	65	32	5	29	32	1.79
46071105--46071574	47	9.9	47	94	1	771	32	8	29	29	1.87
46071693--46071771	37	2.1	37	88	0	113	24	20	31	24	1.98
46072984--46073253	40	6.8	40	88	1	389	24	21	28	26	1.99
46076669--46076747	25	3.3	25	61	10	65	32	5	29	32	1.79
46076660--46077367	47	14.9	47	96	1	1254	32	8	29	29	1.87
46076660--46077367	143	5.0	141	96	1	1254	32	8	29	29	1.87
46077486--46077564	37	2.1	37	92	0	131	22	18	31	26	1.97
46085596--46085649	22	2.5	22	93	0	99	22	31	24	22	1.98
46088566--46088595	5	6.0	5	96	0	51	40	16	20	23	1.91
46088815--46088863	18	2.7	18	93	0	80	20	20	16	42	1.89
46095326--46095388	32	2.0	32	100	0	126	30	22	3	44	1.68
46114786--46114833	23	2.0	24	88	11	73	8	10	50	31	1.66
46114786--46114840	20	2.5	23	80	14	62	9	14	49	27	1.73
46116026--46116059	15	2.3	15	94	0	59	35	0	8	55	1.31
46116403--46116538	67	2.0	67	89	0	209	33	25	18	22	1.96
46122969--46123295	163	2.0	163	88	3	489	40	18	9	31	1.83
46128197--46128223	12	2.2	12	100	0	54	51	7	0	40	1.30
46128705--46128882	27	6.6	27	83	3	205	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46128706--46128861	82	1.9	81	88	3	233	26	15	28	29	1.96
46128702--46128882	82	2.2	81	83	2	229	27	15	27	29	1.96
46135708--46135734	12	2.2	12	100	0	54	51	7	0	40	1.30
46136218--46136395	27	6.6	27	83	3	196	26	15	27	30	1.96
46136219--46136374	82	1.9	81	86	3	224	26	15	27	30	1.96
46136215--46136395	82	2.2	81	82	2	220	27	15	27	30	1.96
46154385--46154511	64	2.0	64	90	0	200	28	17	13	40	1.87
46154649--46154770	42	2.9	42	85	6	149	31	15	21	31	1.94
46157594--46157775	40	4.6	40	91	2	287	23	23	25	27	2.00
46175513--46175563	20	2.5	20	96	0	93	29	25	11	33	1.91
46178369--46178488	47	2.6	47	97	0	222	21	19	30	28	1.97
46184863--46184946	20	4.4	19	73	23	70	33	5	1	59	1.29
46184868--46184917	16	2.8	17	85	11	57	36	8	0	56	1.29
46192103--46192203	42	2.4	42	84	0	130	34	26	14	23	1.94
46193654--46193697	20	2.1	21	83	8	54	54	4	18	22	1.61
46197691--46197723	18	1.9	17	88	11	50	30	15	12	42	1.83
46198856--46198912	26	2.2	26	83	3	69	28	17	17	36	1.93
46200161--46200197	5	7.2	5	93	6	65	81	0	18	0	0.70
46201129--46201189	27	2.3	27	81	10	74	54	6	0	39	1.27
46201237--46201280	19	2.4	18	85	7	54	40	9	0	50	1.34
46203569--46203614	20	2.3	21	82	14	62	26	17	28	28	1.98
46203607--46203743	60	2.3	60	79	6	143	29	20	24	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46211983--46212066	20	4.4	19	73	23	70	33	5	1	59	1.29
46211988--46212037	16	2.8	17	85	11	57	36	8	0	56	1.29
46220304--46220411	42	2.6	42	79	5	119	34	30	14	20	1.93
46221863--46221906	20	2.1	21	83	8	54	54	4	18	22	1.61
46222716--46222774	30	2.0	30	86	0	82	38	8	25	27	1.84
46223111--46223215	46	2.2	46	83	6	129	36	14	25	23	1.93
46230098--46230156	30	2.0	30	86	0	82	38	8	25	27	1.84
46232575--46232638	33	2.0	33	84	9	87	29	25	20	25	1.99
46232575--46232638	32	2.0	32	84	9	85	29	25	20	25	1.99
46234258--46234294	5	7.2	5	93	6	65	81	0	18	0	0.70
46237592--46237633	22	1.9	22	85	0	57	26	7	50	16	1.71
46237667--46237712	20	2.3	21	82	14	62	26	17	28	28	1.98
46245486--46245533	24	2.0	25	87	4	71	22	22	18	35	1.96
46247514--46247704	41	4.7	41	88	1	294	27	28	23	20	1.99
46247514--46247704	81	2.3	82	90	0	294	27	28	23	20	1.99
46251513--46251582	21	3.2	21	62	18	52	20	15	25	38	1.92
46254474--46254585	27	4.2	26	84	7	134	37	22	24	16	1.93
46254474--46254585	54	2.1	54	86	3	154	37	22	24	16	1.93
46259107--46259159	27	2.0	27	96	0	97	26	28	3	41	1.73
46273764--46273796	13	2.6	13	90	4	50	48	12	0	39	1.40
46274809--46274856	24	2.0	24	83	0	60	2	20	20	56	1.53
46276705--46276785	5	16.8	5	71	21	50	75	0	4	19	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46276742--46276786	6	7.8	6	80	14	51	82	0	2	15	0.77
46276705--46276785	23	3.4	23	81	10	83	75	0	4	19	0.98
46276705--46276786	14	5.8	13	69	26	51	75	0	4	19	0.98
46282161--46282193	13	2.6	13	90	4	50	48	12	0	39	1.40
46285327--46285437	55	2.0	55	98	0	213	44	14	11	29	1.81
46303355--46304154	397	2.0	398	91	0	1289	28	23	16	32	1.95
46310830--46311038	47	4.5	46	78	4	177	24	16	28	31	1.96
46313993--46314039	20	2.3	20	92	7	78	36	10	19	34	1.86
46314085--46314193	25	4.4	24	80	6	112	26	22	21	29	1.99
46314086--46314205	49	2.4	50	81	9	138	25	23	21	29	1.99
46315165--46315301	44	3.2	43	77	8	118	34	27	15	23	1.94
46337086--46337241	27	5.7	27	84	4	93	26	14	28	30	1.95
46337066--46337220	82	1.9	80	84	5	204	26	14	27	30	1.95
46337092--46337241	55	2.8	54	81	4	158	27	14	28	29	1.95
46337062--46337241	82	2.2	80	80	3	200	26	15	27	31	1.95
46344427--46344603	27	6.6	27	82	4	178	26	15	27	30	1.96
46344428--46344582	82	1.9	80	85	5	213	26	15	27	30	1.96
46344424--46344603	82	2.2	80	81	3	209	26	15	27	30	1.96
46351476--46351647	93	1.8	93	88	4	267	29	30	20	20	1.97
46351468--46351636	46	3.7	44	79	10	187	30	30	19	20	1.97
46351473--46351662	46	4.1	45	73	15	138	30	29	20	20	1.97
46356922--46357032	27	4.1	27	86	5	136	36	21	25	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46356922--46357032	54	2.1	53	86	1	150	36	21	25	17	1.95
46357159--46357210	27	1.9	27	88	7	79	30	15	19	34	1.93
46364781--46364891	27	4.1	27	83	5	118	38	20	23	17	1.93
46379097--46379123	13	2.1	13	100	0	54	14	29	33	22	1.94
46383684--46383730	25	1.9	25	86	4	69	21	0	2	76	0.89
46387427--46387547	42	2.8	43	82	9	158	30	23	19	25	1.98
46391198--46391277	37	2.2	37	93	2	135	33	26	5	35	1.78
46395063--46395209	43	3.4	42	83	5	161	31	23	18	26	1.97
46396757--46396799	22	2.0	22	85	0	59	41	27	20	9	1.83
46397034--46397091	27	2.1	27	83	0	71	25	20	17	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318