genome.fa.s5.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  118  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37251566--37251687	50	2.6	46	80	5	127	28	22	13	35	1.92
37264038--37264175	65	2.1	65	94	0	240	30	21	20	28	1.98
37269583--37269642	10	6.0	10	81	11	70	66	1	10	21	1.30
37271616--37271654	20	2.0	20	100	0	78	71	0	5	23	1.05
37276655--37276693	20	2.0	20	100	0	78	33	0	10	56	1.33
37277223--37277262	19	2.0	20	85	14	55	62	2	12	22	1.42
37293795--37293875	22	3.5	23	74	12	67	61	2	6	29	1.33
37293827--37293878	22	2.3	22	86	3	68	65	1	3	28	1.21
37294198--37294225	3	9.3	3	100	0	56	67	0	0	32	0.91
37294354--37294395	22	1.9	22	85	0	57	59	4	4	30	1.39
37298301--37298334	3	11.3	3	93	0	50	61	0	5	32	1.20
37304819--37304864	22	2.1	22	84	8	58	67	8	4	19	1.35
37308934--37308977	23	1.9	23	85	0	61	20	13	4	61	1.50
37313864--37313903	14	2.9	14	85	3	55	40	5	0	55	1.22
37316189--37316231	17	2.4	19	81	11	56	41	0	2	55	1.12
37319498--37319536	16	2.4	16	91	8	62	30	0	12	56	1.37
37327878--37327918	21	2.0	21	85	9	57	51	4	19	24	1.66
37329151--37329188	18	2.1	18	100	0	76	63	5	10	21	1.46
37329303--37329347	17	2.6	17	83	16	58	71	0	6	22	1.09
37329870--37329985	44	2.7	44	80	9	123	61	2	8	27	1.39
37329426--37330040	3	203.0	3	68	9	178	60	4	8	26	1.45
37331102--37331158	15	3.6	16	76	9	55	7	1	40	50	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37331525--37331576	26	2.0	26	84	3	68	55	3	9	30	1.50
37335407--37335434	3	9.3	3	100	0	56	32	0	0	67	0.91
37335873--37335942	34	2.2	32	82	10	81	57	1	0	41	1.08
37337483--37337549	30	2.2	30	81	7	73	40	5	2	50	1.42
37340411--37340436	3	8.7	3	100	0	52	69	0	0	30	0.89
37342083--37342825	44	16.6	44	71	8	338	27	22	19	30	1.98
37342172--37342350	96	1.9	97	88	5	274	29	21	17	32	1.96
37342268--37342833	133	4.3	133	86	0	711	27	22	19	29	1.98
37342035--37342471	229	1.9	229	88	0	658	27	21	19	31	1.97
37342073--37342830	89	8.5	89	71	10	301	27	22	19	30	1.98
37342270--37342833	266	2.1	266	87	1	790	28	22	19	29	1.98
37354155--37354618	254	1.8	253	83	1	624	38	19	12	29	1.89
37359165--37359240	33	2.3	33	93	0	125	40	3	39	15	1.66
37364400--37364466	34	2.0	34	82	11	84	46	5	4	43	1.48
37364450--37364485	17	2.1	18	89	5	56	58	0	0	41	0.98
37364621--37364667	17	2.9	17	76	17	55	48	2	0	48	1.13
37366245--37366269	13	1.9	13	100	0	50	36	24	24	16	1.94
37371674--37371747	37	2.0	37	91	0	121	18	6	37	36	1.78
37384795--37384829	17	1.9	17	88	11	52	17	0	17	65	1.27
37390894--37391323	213	2.0	214	92	0	709	23	14	32	29	1.94
37392433--37392684	140	1.8	140	95	0	459	39	4	4	51	1.43
37392657--37392697	19	2.2	19	86	0	55	39	2	4	53	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37392573--37393009	170	2.4	175	86	8	589	38	4	6	50	1.48
37392827--37392879	19	2.8	18	74	8	52	37	5	3	52	1.43
37416163--37416254	3	32.7	3	69	8	52	65	2	6	26	1.28
37416197--37416233	18	2.1	18	94	0	65	72	2	2	21	1.09
37419032--37419082	15	3.4	15	76	15	52	25	33	5	35	1.80
37419816--37420011	107	1.8	108	86	6	290	35	21	11	31	1.89
37419833--37419996	52	3.1	52	68	15	129	34	21	13	29	1.92
37430451--37430493	13	3.5	13	81	9	54	9	0	9	81	0.88
37430634--37431552	176	5.2	176	78	6	760	26	23	17	31	1.97
37430634--37431567	353	2.7	351	77	5	888	26	23	17	31	1.97
37431566--37431651	44	2.0	44	86	9	122	25	26	13	33	1.94
37431667--37431921	133	1.9	133	88	3	388	27	26	18	28	1.98
37432158--37432312	64	2.4	64	84	3	193	41	12	15	30	1.85
37433913--37433975	29	2.2	27	81	13	65	4	12	7	74	1.19
37440229--37440271	13	3.5	13	81	9	54	9	0	9	81	0.88
37440403--37441332	176	5.3	174	80	5	869	28	22	17	31	1.97
37441226--37441494	147	1.8	147	88	1	414	30	24	15	30	1.95
37441445--37441701	133	1.9	133	88	1	390	28	26	16	28	1.97
37441934--37442092	64	2.4	67	84	5	209	42	13	15	29	1.84
37443073--37443135	22	2.9	22	72	13	58	12	7	1	77	1.05
37443698--37443760	29	2.2	28	83	8	74	4	14	7	73	1.23
37452607--37452650	13	3.4	13	77	0	52	36	22	2	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37452733--37452868	46	3.0	46	86	2	175	21	22	15	40	1.91
37453325--37453375	23	2.2	24	85	3	68	33	23	31	11	1.91
37458512--37458587	29	2.7	27	69	17	64	48	3	0	47	1.20
37458560--37458593	18	1.9	18	88	5	52	47	0	2	50	1.16
37458719--37458766	19	2.3	19	82	13	51	50	16	0	33	1.46
37461755--37461838	26	3.3	26	68	18	77	55	3	14	26	1.55
37461736--37461849	50	2.3	51	90	3	178	60	2	13	23	1.45
37461831--37461873	13	3.0	14	80	12	52	69	6	2	20	1.23
37462989--37463034	17	2.7	17	80	9	58	10	0	13	76	1.03
37475378--37475412	17	2.1	17	100	0	70	17	31	34	17	1.93
37480146--37480201	25	2.2	25	96	0	103	7	14	30	48	1.70
37480663--37480867	44	4.4	44	66	16	108	29	21	20	27	1.98
37480627--37481305	143	4.7	143	86	1	925	28	21	19	30	1.98
37481324--37481372	20	2.5	20	96	0	89	40	24	12	22	1.88
37481612--37481673	30	2.1	30	100	0	124	33	19	9	37	1.84
37482489--37482587	20	5.0	19	72	15	58	2	15	4	78	0.98
37482497--37482605	13	8.4	12	78	17	85	2	11	2	82	0.88
37482510--37482597	8	10.6	8	76	18	74	2	12	2	82	0.85
37482497--37482607	42	2.7	43	78	12	69	2	11	2	82	0.87
37482545--37482607	1	63.0	1	74	0	54	3	7	1	87	0.71
37482510--37482605	17	5.9	15	77	14	84	3	11	2	83	0.85
37482497--37482607	25	4.2	25	78	12	107	2	11	2	82	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37492498--37492535	8	4.8	8	93	0	67	50	21	26	2	1.62
37495418--37495472	21	2.5	22	75	13	60	67	7	10	14	1.41
37495645--37495670	13	2.0	13	100	0	52	69	7	7	15	1.35
37497126--37497272	39	3.7	38	83	8	177	37	27	12	22	1.90
37497123--37497272	40	3.7	39	83	5	192	36	28	12	22	1.91
37499381--37499426	20	2.3	20	96	0	83	13	32	23	30	1.93
37500372--37500471	53	1.9	52	87	4	148	36	17	18	29	1.93
37500833--37500890	3	19.3	3	100	0	116	67	0	0	32	0.91
37501747--37501808	31	2.0	31	81	9	74	61	0	17	20	1.35
37505555--37505703	68	2.2	68	86	2	201	28	19	30	21	1.97
37508070--37508098	14	2.0	15	93	6	51	31	0	20	48	1.50
37511576--37511621	15	2.9	16	84	9	58	45	2	0	52	1.13
37513692--37513754	30	2.1	30	90	0	99	60	12	3	23	1.47
37515577--37515633	28	2.1	27	84	12	73	71	5	17	5	1.23
37518391--37518511	64	1.9	64	84	0	161	22	19	23	34	1.96
37518369--37518526	64	2.5	64	72	3	158	22	24	20	32	1.98
37533177--37533211	6	5.8	6	100	0	70	51	17	17	14	1.77
37535740--37535820	21	3.8	21	72	15	76	19	24	39	16	1.91
37536573--37536598	4	6.5	4	100	0	52	76	0	0	23	0.78
37538328--37538396	29	2.4	29	100	0	138	24	28	21	24	1.99
37541795--37541940	42	3.5	42	80	1	114	19	21	17	41	1.90
37547227--37547346	24	5.0	24	68	10	93	20	21	20	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37548328--37548411	42	2.0	40	86	8	116	20	23	32	23	1.98
37552848--37552874	13	2.1	13	100	0	54	51	18	7	22	1.70
37554068--37554131	31	2.1	31	90	0	101	25	23	15	35	1.94
37554339--37554442	23	4.4	24	95	3	176	28	22	20	28	1.98
37554488--37554538	9	5.0	11	72	18	56	35	19	9	35	1.85
37554488--37554538	20	2.5	20	90	0	84	35	19	9	35	1.85
37554575--37554622	25	1.9	25	86	0	69	25	16	25	33	1.96
37555898--37556005	27	3.9	27	75	15	87	32	9	17	40	1.81
37555960--37556154	27	7.2	27	77	6	119	33	8	21	36	1.83
37556078--37556262	81	2.3	81	85	0	262	37	8	26	27	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318