genome.fa.s5.2.7.7.80.10.50.1000.204.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  204  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64423816--64423855	6	6.8	6	97	2	73	30	0	0	70	0.88
64429678--64429934	40	6.4	40	87	4	317	22	22	29	25	1.99
64440215--64440253	20	1.9	21	89	5	62	15	17	2	64	1.41
64440330--64440362	16	2.1	16	100	0	66	12	18	36	33	1.88
64442659--64442776	17	6.9	17	70	11	80	41	9	11	37	1.74
64443089--64443338	138	1.8	138	83	1	331	27	16	21	34	1.95
64443737--64443808	36	2.0	36	100	0	144	25	16	27	30	1.97
64448786--64448864	37	2.1	37	88	4	115	25	30	18	25	1.98
64448983--64449307	47	6.9	47	92	0	515	28	30	9	32	1.88
64449284--64449329	22	2.1	22	100	0	92	26	34	8	30	1.86
64454498--64454579	35	2.3	35	85	6	103	41	30	10	17	1.83
64457685--64457727	22	2.0	21	82	8	52	53	2	18	25	1.56
64458224--64458303	28	2.9	27	88	7	108	26	16	27	30	1.97
64458278--64458320	18	2.4	18	88	11	63	25	16	25	32	1.96
64458253--64458393	55	2.9	46	80	15	158	25	14	28	31	1.95
64458298--64458393	27	3.5	27	90	2	147	26	14	29	30	1.95
64458293--64458404	27	4.1	27	83	4	109	28	13	25	32	1.94
64465513--64465631	59	2.0	59	100	0	238	42	6	23	27	1.79
64465882--64465924	22	2.0	21	82	8	52	53	2	18	25	1.56
64466421--64466599	27	6.6	27	92	1	268	26	14	28	30	1.95
64466421--64466599	82	2.2	82	88	2	270	26	14	28	30	1.95
64474854--64474891	17	2.2	18	90	4	60	84	0	13	2	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64478189--64478232	5	8.8	5	81	18	56	20	0	2	77	0.88
64478189--64478232	14	3.0	14	81	18	54	20	0	2	77	0.88
64479816--64479936	54	2.2	54	94	0	206	28	23	23	24	2.00
64485811--64485881	31	2.3	31	85	0	88	32	2	15	49	1.59
64485836--64485902	31	2.2	31	94	0	116	28	0	17	53	1.44
64492972--64493024	19	2.7	19	79	2	61	64	3	3	28	1.28
64493009--64493098	28	3.1	27	76	16	83	62	4	5	27	1.37
64492990--64493060	20	3.7	20	68	22	53	60	2	2	33	1.26
64493252--64493326	36	2.1	36	85	9	100	34	2	1	61	1.18
64493277--64493382	45	2.3	45	79	6	106	35	2	0	60	1.18
64493921--64493982	11	5.8	10	78	12	61	27	27	0	45	1.54
64493933--64493982	21	2.4	21	80	9	59	28	26	0	46	1.53
64495135--64495160	7	3.7	7	100	0	52	26	0	15	57	1.38
64495777--64495814	18	2.1	18	90	0	58	23	23	10	42	1.85
64499813--64499983	93	1.8	93	96	0	315	28	28	21	21	1.99
64499805--64499980	46	3.8	46	79	12	216	28	28	21	21	1.98
64506846--64506925	40	2.0	40	85	4	108	28	21	25	25	1.99
64508369--64508530	46	3.5	46	76	14	188	28	28	21	21	1.99
64510678--64511234	125	4.5	125	84	5	695	28	17	17	36	1.93
64511450--64511491	22	2.0	21	90	9	68	42	19	0	38	1.51
64527080--64527324	40	6.1	40	81	5	239	26	21	26	25	1.99
64527095--64527312	120	1.8	120	87	4	323	27	19	26	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64528756--64528917	46	3.5	46	76	14	188	28	28	21	21	1.99
64531090--64531655	126	4.5	126	88	0	803	27	16	18	37	1.92
64531877--64531917	22	1.9	21	95	5	73	43	17	0	39	1.49
64542116--64542291	46	3.8	45	79	12	196	19	20	30	28	1.97
64542113--64542284	93	1.8	93	93	0	299	20	20	30	27	1.98
64546209--64546243	18	1.9	18	88	0	52	0	54	0	45	0.99
64546222--64546247	12	2.2	12	100	0	52	0	53	0	46	1.00
64549075--64549121	20	2.3	20	92	0	76	46	17	10	25	1.79
64549815--64549841	13	2.1	13	100	0	54	48	0	22	29	1.51
64567524--64567602	37	2.1	37	86	4	106	26	30	17	25	1.97
64567721--64568356	47	13.4	47	95	2	1103	29	29	8	32	1.87
64567776--64568352	96	6.1	96	98	1	1108	30	29	8	32	1.87
64567721--64568356	143	4.5	141	95	2	1103	29	29	8	32	1.87
64572503--64572529	13	2.1	13	100	0	54	14	29	33	22	1.94
64581496--64581689	43	4.5	43	84	1	219	28	13	25	31	1.94
64588044--64588148	43	2.4	43	98	0	201	32	14	16	37	1.88
64590242--64590398	43	3.7	42	75	5	129	29	17	25	28	1.97
64600179--64600286	51	2.1	51	82	0	126	30	19	11	38	1.86
64603149--64603182	6	5.7	6	92	0	59	38	32	17	11	1.86
64606768--64606844	38	2.0	38	100	0	154	40	18	18	23	1.91
64614679--64614839	80	2.0	81	96	1	297	47	12	6	34	1.66
64616517--64616576	29	2.1	29	90	0	93	53	1	0	45	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64628145--64628369	119	1.9	120	83	8	298	25	27	22	24	2.00
64628145--64628369	40	5.7	40	85	9	266	25	27	22	24	2.00
64629450--64629474	13	1.9	13	100	0	50	0	8	4	88	0.64
64636065--64636295	119	1.9	120	82	9	294	24	27	22	25	2.00
64636066--64636295	40	5.8	40	83	9	258	24	26	22	25	2.00
64637373--64637397	13	1.9	13	100	0	50	0	8	4	88	0.64
64640343--64640367	10	2.5	10	100	0	50	12	8	16	64	1.49
64644932--64644956	13	1.9	13	100	0	50	32	16	16	36	1.90
64646831--64646909	25	3.3	25	69	16	85	35	3	29	31	1.75
64646806--64646959	47	3.3	47	93	0	272	34	7	29	29	1.84
64648800--64649117	40	7.9	40	79	3	345	22	22	27	26	1.99
64648800--64649120	80	4.0	80	92	0	500	22	22	28	26	1.99
64648800--64649115	120	2.6	120	87	0	434	23	22	27	26	1.99
64649108--64649191	43	2.0	43	87	0	123	16	22	28	32	1.96
64649113--64649208	43	2.2	43	84	0	120	17	20	29	32	1.96
64649340--64649459	58	2.1	57	86	6	165	24	15	27	32	1.96
64651619--64651643	13	1.9	13	100	0	50	32	16	16	36	1.90
64653516--64653594	25	3.3	25	69	16	85	35	3	29	31	1.75
64653491--64653644	47	3.3	47	93	0	272	33	7	29	29	1.84
64664151--64664181	15	2.1	15	100	0	62	38	29	12	19	1.89
64674441--64674530	45	2.0	45	93	0	153	23	13	24	38	1.90
64683255--64683361	57	1.9	56	84	1	142	29	19	7	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64688740--64688981	48	5.0	48	96	0	439	35	6	27	30	1.81
64691454--64691680	43	5.3	42	93	2	373	28	29	17	24	1.97
64691453--64691680	85	2.7	86	92	4	379	28	29	17	24	1.97
64692237--64692276	16	2.4	16	83	4	53	42	32	10	15	1.79
64695053--64695112	30	2.0	30	86	0	84	41	13	20	25	1.88
64695450--64695671	46	4.8	45	77	13	170	26	20	29	22	1.99
64695455--64695713	140	1.8	140	81	5	317	27	20	28	23	1.99
64697308--64697367	27	2.2	27	85	5	77	40	20	10	30	1.85
64703528--64703552	13	1.9	13	100	0	50	24	16	24	36	1.94
64706098--64706345	123	2.0	123	99	0	487	26	20	15	36	1.93
64710549--64710670	22	5.3	22	62	21	61	25	29	11	33	1.91
64710521--64710924	47	8.6	47	92	2	600	27	29	9	33	1.88
64712192--64712370	85	2.1	85	97	0	340	26	27	8	37	1.85
64724297--64724554	49	5.5	46	75	12	159	24	25	20	28	1.99
64727140--64727175	18	2.0	18	88	0	54	30	22	8	38	1.83
64730566--64730626	21	3.0	21	90	2	97	24	27	36	11	1.90
64731894--64732019	49	2.6	49	86	3	157	21	28	22	27	1.99
64735183--64735227	23	2.0	23	87	12	67	20	4	4	71	1.21
64739062--64739087	7	3.7	7	100	0	52	76	0	0	23	0.78
64740833--64740893	30	2.0	31	96	3	115	40	6	22	29	1.79
64742146--64742364	84	2.6	85	94	4	381	31	19	20	28	1.97
64742549--64742637	42	2.1	42	91	0	142	52	12	4	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64742662--64742701	19	2.2	18	86	13	55	42	15	2	40	1.60
64746504--64746592	42	2.1	42	93	0	151	52	12	5	29	1.61
64746505--64746614	42	2.6	42	84	7	98	52	11	5	30	1.60
64746617--64746656	19	2.2	18	95	4	71	42	15	2	40	1.60
64755850--64755969	48	2.5	48	85	2	154	27	22	15	35	1.94
64758470--64758655	67	2.8	67	80	11	179	32	16	29	22	1.95
64772921--64773097	56	3.1	56	91	2	275	33	22	15	28	1.94
64773063--64773284	43	5.2	43	84	2	279	31	26	18	24	1.97
64781022--64781115	24	3.9	23	75	8	80	19	24	3	53	1.60
64781471--64781572	31	3.3	31	97	0	195	27	23	2	46	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318