Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: A05 Parameters: 2 7 7 80 10 50 1000 Length: 100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  152  of  318  ( 38109 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47410188--47410272
15
5.6
15
82
10
93
0
20
0
80
0.72
47410188--47410259
22
3.1
23
92
6
119
0
19
0
80
0.71
47410197--47410272
8
10.3
7
83
13
91
0
18
0
81
0.69
47410188--47410272
22
4.0
22
80
14
81
0
20
0
80
0.72
47410552--47410608
3
18.0
3
80
20
55
0
33
0
66
0.92
47410542--47410608
27
2.6
25
84
11
75
0
29
0
70
0.88
47410550--47410608
24
2.5
24
83
13
77
0
32
0
67
0.91
47410969--47411085
30
3.9
29
79
11
103
45
3
21
29
1.68
47410984--47411085
30
3.4
30
87
2
143
45
3
21
29
1.70
47410950--47411085
60
2.3
59
83
5
159
42
3
22
31
1.71
47411356--47411572
54
4.1
55
87
8
315
37
17
16
28
1.92
47411551--47411585
14
2.5
14
90
0
52
60
2
17
20
1.49
47411679--47411931
90
2.9
87
81
8
300
36
17
18
26
1.94
47411890--47412694
192
4.2
192
96
0
1477
34
20
14
31
1.92
47419031--47420752
873
2.0
873
98
0
3345
21
21
25
31
1.98
47425307--47425411
17
6.2
16
70
13
68
49
13
9
27
1.73
47425536--47425663
53
2.4
53
78
6
145
40
10
13
35
1.78
47425432--47425650
35
6.3
34
72
9
120
44
10
13
31
1.78
47425446--47425968
17
28.7
18
66
17
165
45
10
12
31
1.76
47425743--47425788
19
2.5
19
82
10
51
45
6
13
34
1.69
47425858--47425899
22
1.9
22
85
0
57
61
11
2
23
1.42
47425879--47425977
35
2.9
34
79
7
103
49
13
11
26
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47425931--47425982
18
2.9
19
80
11
56
46
11
11
30
1.76
47425925--47426016
17
4.9
18
73
13
53
42
11
11
33
1.79
47426586--47426663
8
9.2
8
82
12
86
0
20
0
79
0.73
47426586--47426648
15
4.0
15
91
6
90
0
19
0
80
0.70
47426588--47426652
23
2.7
23
90
4
94
0
18
0
81
0.69
47426942--47427003
3
19.0
3
87
12
79
0
33
0
66
0.92
47426942--47427003
19
3.3
19
86
10
92
0
33
0
66
0.92
47427363--47427479
30
3.9
29
79
11
103
45
3
21
29
1.68
47427378--47427479
30
3.4
30
87
2
143
45
3
21
29
1.70
47427344--47427479
60
2.3
59
83
5
159
42
3
22
31
1.71
47427882--47427943
22
2.9
22
88
4
83
8
27
24
40
1.83
47429032--47429085
27
2.0
28
85
10
76
44
5
1
48
1.37
47445013--47445052
21
2.0
20
85
5
53
12
2
12
72
1.22
47447721--47447754
13
2.8
12
86
8
50
32
11
0
55
1.36
47447718--47447754
12
3.0
12
84
7
56
32
10
0
56
1.34
47448203--47448274
16
4.5
16
82
0
81
27
25
4
43
1.73
47448205--47448274
32
2.2
32
92
0
113
28
24
4
42
1.73
47451934--47452091
42
3.7
41
76
11
140
31
25
18
24
1.98
47461075--47461113
14
2.8
14
88
0
51
41
10
17
30
1.83
47461377--47461550
87
2.0
88
93
2
298
45
10
9
33
1.72
47461661--47461712
15
3.2
15
73
19
50
44
0
1
53
1.11
47461793--47461848
22
2.6
22
83
5
62
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47462946--47462995
21
2.4
21
75
21
52
30
18
22
30
1.97
47464230--47464286
28
1.9
30
82
10
73
12
24
7
56
1.61
47466589--47466696
26
4.2
26
89
0
171
31
5
25
37
1.79
47467518--47467599
42
2.0
42
100
0
164
35
12
20
31
1.90
47468222--47468274
26
2.0
26
85
7
72
37
22
15
24
1.92
47481746--47481789
22
2.0
21
83
12
54
11
27
38
22
1.88
47484503--47484665
43
3.8
44
81
5
156
26
16
23
32
1.96
47486626--47486715
20
4.5
20
76
5
74
42
12
14
31
1.82
47488991--47489054
32
2.0
33
82
14
80
28
6
9
56
1.55
47507772--47507850
39
2.0
41
80
14
94
6
25
1
67
1.22
47514686--47514752
25
2.7
25
75
11
66
20
22
17
38
1.93
47514632--47514777
26
5.8
26
69
11
81
21
19
18
40
1.92
47523117--47523173
29
2.0
29
86
6
80
56
5
10
28
1.55
47531630--47531769
53
2.6
53
81
2
163
37
18
22
20
1.94
47537495--47537687
55
3.6
54
80
2
208
38
19
21
20
1.94
47537595--47537699
53
2.0
53
84
0
138
38
17
23
20
1.93
47542257--47542533
43
6.4
43
78
5
227
24
14
21
39
1.91
47542282--47542533
129
2.0
129
81
6
305
24
14
21
39
1.91
47553163--47553219
26
2.2
26
93
3
98
33
21
8
36
1.84
47553482--47553615
59
2.3
59
93
0
232
31
21
14
32
1.94
47555128--47555244
41
2.9
40
73
7
110
38
18
17
24
1.93
47558251--47558277
12
2.2
12
100
0
54
55
7
7
29
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47558323--47558431
28
4.0
30
70
21
80
45
3
0
50
1.19
47558305--47558434
51
2.5
51
85
2
154
47
3
0
49
1.17
47565518--47565611
41
2.3
41
86
0
125
32
25
20
21
1.97
47572893--47572917
13
1.9
13
100
0
50
8
32
36
24
1.84
47575948--47575991
20
2.2
20
100
0
88
9
27
13
50
1.72
47588712--47588750
19
2.1
19
95
0
69
28
25
17
28
1.98
47593535--47593794
43
6.0
43
81
0
250
25
15
20
40
1.90
47595297--47595566
40
6.8
40
79
5
278
34
25
15
24
1.95
47596867--47596903
17
2.2
17
100
0
74
29
5
13
51
1.63
47598150--47598214
33
2.0
32
88
5
96
40
0
24
35
1.56
47599505--47599611
38
2.8
38
84
0
142
30
29
21
17
1.96
47603681--47603750
27
2.6
27
95
2
113
31
28
12
27
1.93
47603681--47603775
28
3.4
28
89
2
129
32
28
12
26
1.93
47609437--47609515
37
2.1
37
90
0
122
25
31
18
24
1.98
47609634--47610081
47
9.4
47
92
1
653
28
29
9
32
1.88
47612923--47613099
40
4.5
40
75
8
148
23
29
23
22
1.99
47613003--47613181
40
4.5
41
77
8
129
25
27
22
25
2.00
47613496--47613567
29
2.5
29
86
4
92
27
31
13
26
1.94
47615476--47615554
37
2.1
37
88
0
113
24
31
20
24
1.98
47615673--47616075
47
8.4
47
90
3
563
28
29
9
32
1.88
47618915--47619177
40
6.6
40
82
4
273
24
27
23
24
2.00
47619519--47619617
43
2.3
43
98
1
191
27
35
15
22
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47621442--47621517
35
2.1
36
87
2
109
26
32
15
25
1.95
47621634--47622074
47
9.4
47
89
5
624
28
29
9
32
1.88
47621634--47622068
135
3.1
138
85
6
606
28
29
9
32
1.88
47621781--47622072
146
2.0
145
91
0
476
29
29
9
31
1.88
47624911--47625087
40
4.5
40
75
8
148
23
29
23
22
1.99
47624991--47625169
40
4.5
41
77
8
129
25
27
22
25
2.00
47625484--47625555
29
2.5
29
86
4
92
27
31
13
26
1.94
47627461--47627539
37
2.1
37
88
0
113
24
31
20
24
1.98
47627657--47628059
47
8.4
47
90
3
563
28
29
9
32
1.88
47630898--47631160
40
6.6
40
82
4
273
24
27
23
24
2.00
47631502--47631601
43
2.3
43
100
0
200
27
35
15
23
1.94
47633469--47633547
37
2.1
37
90
0
122
25
31
18
24
1.98
47633666--47634164
47
10.4
47
91
2
683
29
29
9
32
1.88
47636854--47636899
24
1.9
24
100
0
92
30
17
26
26
1.97
47636854--47636905
24
2.2
24
92
0
86
26
17
25
30
1.97
47647830--47648005
46
3.8
46
77
15
182
29
30
20
19
1.97
47647839--47648009
93
1.8
93
92
0
288
28
30
20
20
1.98
47650407--47650495
30
3.0
29
81
1
97
57
15
15
11
1.65
47650407--47650486
15
5.4
14
76
4
61
58
13
16
11
1.62
47653408--47653581
46
3.8
46
78
13
196
27
31
21
19
1.98
47653415--47653586
93
1.9
92
93
1
299
26
31
22
19
1.98
47653459--47653602
45
3.1
44
72
14
121
28
30
20
20
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47658004--47658229
50
4.5
49
77
8
222
30
26
17
25
1.97
47665014--47665240
50
4.5
50
79
4
217
30
25
19
25
1.98
47671944--47672170
50
4.5
50
81
8
237
30
26
18
24
1.98
47674329--47674379
6
7.8
6
79
16
57
78
3
0
17
0.90
47685554--47685588
18
1.9
18
94
0
61
71
2
5
20
1.19
47692008--47692254
50
4.9
50
83
2
289
27
17
25
30
1.97
47691962--47692235
100
2.7
100
85
2
325
27
16
25
31
1.97
47692457--47692491
17
2.0
18
88
5
54
54
0
11
34
1.37
47692814--47693143
180
1.8
180
88
0
507
38
9
19
32
1.84
47703518--47703570
24
2.2
24
83
9
65
16
24
20
37
1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318