Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  117  of  318  ( 38109 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36997203--36997281
40
2.0
40
84
0
104
21
24
17
36
1.94
36999842--36999880
11
3.6
11
86
6
53
0
12
5
82
0.83
37009646--37009732
41
2.2
40
85
2
111
65
5
2
26
1.27
37009748--37009793
24
2.0
23
86
4
65
63
0
4
32
1.14
37021577--37021623
24
2.0
24
86
0
67
10
6
25
57
1.56
37023397--37023443
6
7.8
6
90
0
58
19
63
2
14
1.40
37023558--37023599
12
3.5
12
83
0
57
28
45
11
14
1.80
37023699--37023745
24
2.0
24
83
8
60
36
40
8
14
1.77
37023749--37023798
21
2.4
21
79
0
64
16
64
0
20
1.30
37026560--37026594
18
1.9
18
100
0
70
40
2
28
28
1.71
37029574--37029635
27
2.2
30
75
18
71
56
17
0
25
1.41
37029998--37030030
16
2.1
16
94
0
57
69
6
6
18
1.30
37030954--37031253
44
6.7
45
75
5
207
30
21
17
31
1.96
37030907--37031210
133
2.3
133
79
3
333
30
18
17
33
1.94
37030954--37031301
89
3.9
89
79
4
337
29
20
17
32
1.96
37043073--37043105
17
1.9
17
93
0
57
72
0
6
21
1.05
37043802--37043829
14
2.0
14
100
0
56
71
7
0
21
1.09
37046421--37046488
21
3.4
21
84
11
99
35
0
2
61
1.11
37046383--37046617
10
25.0
9
65
22
51
32
2
3
61
1.26
37046560--37046605
22
2.1
22
92
8
76
26
2
4
67
1.21
37046560--37046595
11
3.2
12
88
11
58
25
0
5
69
1.10
37055841--37055957
15
8.1
14
72
17
62
26
7
0
64
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37055829--37055936
29
3.8
28
73
22
82
26
7
1
63
1.31
37055904--37055949
15
2.9
15
90
6
65
26
6
0
67
1.15
37055872--37055993
52
2.4
54
74
18
125
27
7
0
64
1.20
37056320--37056558
126
1.9
126
85
1
336
25
16
19
38
1.92
37058062--37058107
19
2.4
18
79
10
56
21
19
13
45
1.84
37058062--37058106
9
4.7
10
79
17
51
22
20
13
44
1.85
37060506--37060563
25
2.3
25
82
8
64
75
10
13
0
1.04
37062578--37063055
45
10.7
45
65
17
194
29
18
21
30
1.97
37062490--37063081
134
4.4
133
90
1
891
29
19
20
30
1.97
37062490--37063076
267
2.2
267
90
1
928
29
19
20
30
1.97
37062306--37063124
133
6.1
133
81
6
829
29
19
21
29
1.97
37062933--37063259
178
1.8
177
88
1
503
30
18
19
30
1.96
37062796--37063366
311
1.8
312
90
3
927
30
18
20
29
1.97
37063110--37063366
134
1.9
134
86
3
365
30
17
20
31
1.96
37063422--37063704
44
6.5
43
70
16
179
36
20
19
23
1.95
37063401--37063660
88
3.0
88
85
3
337
35
21
20
22
1.96
37063520--37063823
131
2.3
132
82
6
348
34
18
22
24
1.96
37064829--37064899
15
4.9
14
77
13
63
25
8
0
66
1.20
37064836--37064869
14
2.3
15
90
5
52
26
5
0
67
1.13
37064827--37064909
44
1.9
42
88
9
123
26
8
0
65
1.21
37064830--37064921
44
2.2
44
84
9
120
28
7
0
64
1.21
37065288--37065528
127
1.9
126
81
2
295
26
16
19
38
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37069201--37069232
16
2.0
16
93
0
55
21
12
28
37
1.90
37075862--37075903
21
2.0
22
90
4
68
28
11
4
54
1.57
37076728--37076822
48
2.1
47
86
11
135
43
5
22
29
1.75
37081494--37081536
17
2.5
18
81
11
54
76
0
2
20
0.89
37087287--37087334
18
2.8
18
74
22
50
43
0
0
56
0.99
37087287--37087336
16
3.1
16
73
21
50
42
0
0
58
0.98
37087313--37087367
24
2.2
24
84
9
67
45
0
1
52
1.11
37087505--37087599
45
2.1
45
88
1
138
32
27
5
34
1.79
37087580--37087631
16
3.2
16
94
0
86
34
36
0
28
1.58
37092211--37092239
6
4.8
6
100
0
58
0
68
0
31
0.89
37095774--37096186
120
3.4
120
96
1
740
41
3
5
49
1.40
37095899--37095940
15
2.9
15
82
10
52
47
0
0
52
1.00
37096019--37096060
15
2.9
15
82
10
52
47
0
0
52
1.00
37096148--37096189
15
2.7
16
82
14
52
45
0
2
52
1.13
37096139--37096180
15
2.9
15
82
10
52
47
0
0
52
1.00
37096123--37096439
157
2.0
157
94
1
555
47
5
3
43
1.41
37096491--37096581
45
2.0
45
85
2
121
37
28
6
27
1.82
37096562--37096630
16
4.2
16
92
3
120
37
36
0
26
1.57
37096562--37096630
33
2.1
32
94
2
120
37
36
0
26
1.57
37101535--37101561
14
1.9
14
100
0
54
0
0
62
37
0.95
37101594--37101643
24
2.1
24
100
0
100
24
16
16
44
1.86
37106579--37106624
23
2.0
23
100
0
92
56
34
0
8
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37107716--37107747
3
10.7
3
93
0
55
31
3
0
65
1.08
37107700--37107761
12
5.9
10
75
18
56
27
3
4
64
1.29
37121679--37121752
30
2.4
31
77
6
78
59
10
0
29
1.31
37124708--37124778
35
2.0
35
97
0
133
46
15
22
15
1.83
37130390--37130431
20
2.1
20
86
0
57
35
7
2
54
1.41
37130585--37130623
19
2.1
19
100
0
78
25
12
15
46
1.81
37133654--37133693
18
2.2
18
86
0
53
62
5
32
0
1.17
37134699--37134825
56
2.3
56
79
8
134
34
7
1
56
1.36
37136472--37136560
36
2.5
35
82
13
103
38
1
21
39
1.61
37146423--37146477
21
2.6
23
77
16
64
50
3
3
41
1.37
37147775--37147835
31
2.0
31
90
0
95
31
22
4
40
1.75
37148721--37148767
22
2.1
22
88
0
67
51
4
17
27
1.64
37150434--37150522
6
14.8
6
85
0
97
2
58
17
21
1.50
37152995--37153028
8
4.2
8
100
0
68
88
0
0
11
0.52
37153288--37153331
13
3.4
12
84
9
52
34
13
9
43
1.76
37153288--37153325
12
3.1
12
92
3
58
31
15
7
44
1.75
37154309--37154372
28
2.4
28
85
10
82
60
3
4
31
1.32
37154927--37154989
29
2.3
27
81
13
67
61
0
7
30
1.24
37154950--37155006
27
2.1
27
80
6
62
66
1
7
24
1.26
37155972--37156017
16
2.8
16
81
18
51
80
0
13
6
0.89
37155981--37156021
20
2.0
20
90
9
66
80
0
9
9
0.91
37157511--37157562
27
2.0
27
88
3
79
44
30
11
13
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37159857--37159964
32
3.4
32
93
0
171
20
29
26
23
1.99
37162046--37162207
35
4.7
35
80
3
184
34
25
11
29
1.90
37166071--37166116
21
2.2
21
84
0
56
15
28
36
19
1.92
37171121--37171678
300
1.8
305
83
7
740
40
8
12
38
1.73
37171763--37171810
23
2.2
21
81
7
51
33
2
2
62
1.18
37174974--37175029
22
2.5
22
78
16
53
39
1
1
57
1.20
37175146--37175183
17
2.2
17
86
9
51
68
10
0
21
1.19
37178403--37178748
37
9.3
37
76
5
311
37
18
16
27
1.92
37178492--37178748
112
2.3
112
86
0
352
38
19
15
26
1.91
37178396--37178743
149
2.3
149
82
0
417
38
18
15
27
1.91
37186651--37186791
39
3.7
38
87
6
187
21
21
29
26
1.99
37204014--37204139
39
3.2
39
88
0
180
23
19
27
29
1.98
37204014--37204204
78
2.5
78
81
5
192
21
20
28
29
1.98
37204014--37204157
39
3.7
39
84
5
139
22
20
27
28
1.99
37205313--37205337
12
2.1
12
100
0
50
16
8
0
76
1.02
37205559--37205596
19
2.0
20
89
5
60
44
13
2
39
1.57
37213763--37213934
40
4.3
40
88
2
222
25
27
21
25
1.99
37213765--37213987
40
5.6
39
83
5
216
25
27
21
25
1.99
37213763--37213987
80
2.8
79
80
7
240
25
27
21
25
1.99
37213919--37213996
40
1.9
41
82
10
97
26
28
20
24
1.99
37215607--37215646
10
3.8
11
78
21
50
0
15
0
85
0.61
37215607--37215647
12
3.5
11
87
9
55
0
17
0
82
0.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37215607--37215646
8
5.1
8
81
6
55
0
15
0
85
0.61
37219289--37219316
14
2.0
14
100
0
56
21
28
21
28
1.99
37224527--37224604
40
2.0
40
86
0
111
34
32
12
20
1.90
37235366--37235560
44
4.3
42
70
14
120
24
22
17
35
1.95
37235450--37235824
94
4.0
92
78
10
375
28
18
16
36
1.93
37235451--37235783
44
7.2
44
65
22
119
28
18
16
37
1.92
37245357--37245394
17
2.2
17
100
0
76
28
42
5
23
1.76
37246180--37246218
18
2.2
18
86
9
53
10
12
0
76
1.01
37246185--37246213
13
2.1
14
93
6
51
6
13
0
79
0.93
37250300--37250338
19
2.1
19
100
0
78
41
25
23
10
1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318