Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  313  of  318  ( 38109 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98858976--98859018
22
1.9
23
85
4
61
37
16
37
9
1.81
98861044--98861119
19
4.1
18
75
14
66
10
6
1
81
0.92
98861047--98861132
6
13.7
6
79
15
68
12
6
1
79
0.99
98863999--98864031
13
2.6
13
90
4
50
39
0
12
48
1.40
98869586--98869614
4
7.2
4
100
0
58
0
24
0
75
0.80
98873854--98873882
11
2.6
11
100
0
58
55
10
13
20
1.68
98877188--98877221
16
2.1
16
88
0
50
32
11
0
55
1.36
98882763--98882807
20
2.2
21
80
11
58
11
17
4
66
1.38
98885957--98885989
17
1.9
17
88
11
50
27
0
3
69
1.03
98885965--98886027
30
2.1
30
91
5
101
26
3
11
58
1.47
98886089--98886128
18
2.2
18
86
8
55
20
0
12
67
1.22
98889817--98889872
20
2.9
19
81
5
60
51
10
1
35
1.47
98891816--98891863
20
2.4
19
80
10
51
33
8
2
56
1.41
98894682--98894748
11
6.2
11
82
3
82
31
14
19
34
1.92
98894689--98894750
21
2.9
21
83
11
72
32
11
20
35
1.88
98896736--98896761
3
8.7
3
100
0
52
0
0
30
69
0.89
98898602--98898806
51
4.2
51
88
5
298
32
21
12
33
1.91
98898650--98898813
44
3.6
44
84
9
220
32
21
12
32
1.91
98898599--98898806
95
2.1
97
90
6
321
32
22
12
33
1.90
98900005--98900127
51
2.4
51
87
2
167
29
21
9
39
1.85
98900596--98900642
16
3.0
16
81
3
51
4
12
19
63
1.44
98901557--98901830
137
2.0
137
88
1
406
29
16
16
36
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98903347--98903401
21
2.5
22
76
5
58
12
3
29
54
1.55
98906105--98906144
11
3.6
11
82
0
53
60
7
7
25
1.50
98907386--98907420
16
2.2
16
89
0
52
65
22
0
11
1.24
98919134--98919183
25
2.0
25
96
0
91
26
4
22
48
1.68
98920544--98920654
54
2.1
54
100
0
222
34
25
15
25
1.95
98926017--98926065
24
2.0
24
100
0
98
26
24
8
40
1.83
98931382--98931410
8
3.6
8
100
0
58
13
0
0
86
0.58
98940435--98940481
19
2.4
19
78
3
58
72
4
2
21
1.12
98940621--98940689
31
2.3
31
80
9
79
66
2
0
30
1.06
98940815--98940848
17
2.0
17
88
0
50
29
0
0
70
0.87
98940815--98940889
27
2.7
27
75
20
75
30
2
1
65
1.15
98942950--98942999
24
2.0
25
88
3
75
44
0
4
52
1.20
98962796--98962820
7
3.6
7
100
0
50
48
16
0
36
1.46
98967821--98967853
15
2.2
15
89
10
50
51
6
0
42
1.26
98968218--98968300
21
4.2
20
77
19
93
55
0
0
44
0.99
98968243--98968276
15
2.3
15
90
10
52
58
0
0
41
0.98
98968143--98968262
62
2.0
61
93
3
206
52
10
1
35
1.45
98968221--98968295
37
2.0
37
100
0
150
57
0
0
42
0.98
98970443--98970476
5
6.8
5
100
0
68
20
0
0
79
0.73
98971313--98971369
28
2.0
29
86
10
82
40
10
7
42
1.66
98971382--98971428
24
2.0
24
100
0
94
31
17
8
42
1.79
98971360--98971440
24
2.9
28
73
19
80
33
16
8
41
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98974240--98974912
239
2.8
239
93
0
1114
31
12
21
35
1.90
98977721--98977848
59
2.1
60
88
2
186
45
2
4
47
1.36
98977743--98977845
31
3.4
31
72
12
88
43
2
3
49
1.35
98977832--98977872
20
2.0
20
86
9
57
39
2
7
51
1.43
98978034--98978064
16
1.9
16
93
0
53
51
6
9
32
1.60
98990490--98990536
21
2.2
22
92
3
78
21
19
38
21
1.94
98991854--98991941
28
3.2
28
78
12
67
27
4
3
64
1.29
98992279--98992332
29
1.9
30
85
14
80
46
7
14
31
1.73
98997655--98997680
12
2.2
12
100
0
52
7
15
30
46
1.74
98997987--98998038
14
3.6
15
76
2
54
30
0
23
46
1.53
98998045--98998151
7
15.0
7
70
11
67
22
0
39
37
1.61
98998045--98998114
15
5.0
14
72
11
63
21
0
41
37
1.53
99000876--99000919
21
2.0
22
82
4
54
27
9
15
47
1.76
99002199--99002490
42
6.9
43
85
4
315
24
17
31
26
1.97
99002199--99002507
43
7.3
43
85
4
340
23
16
31
27
1.96
99002199--99002508
85
3.6
86
83
2
358
23
16
31
28
1.96
99008123--99008287
91
1.8
91
85
3
235
40
16
9
32
1.82
99008121--99008333
91
2.4
90
81
5
234
38
17
8
34
1.81
99008477--99008570
9
10.4
9
76
11
77
65
2
0
31
1.04
99008477--99008570
19
5.2
18
74
11
68
65
2
0
31
1.04
99008536--99008571
10
3.7
10
88
7
56
58
0
0
41
0.98
99008801--99008840
19
2.0
20
90
4
64
30
10
0
60
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99008835--99008884
24
2.1
23
81
3
55
44
0
0
56
0.99
99010920--99010959
20
2.0
20
100
0
80
40
35
0
25
1.56
99013321--99013360
20
1.9
20
85
10
53
22
15
12
50
1.77
99015742--99015814
36
2.0
35
82
10
85
24
0
36
38
1.56
99015806--99015860
22
2.5
22
84
0
74
27
0
32
40
1.57
99015789--99015874
30
3.0
28
78
13
84
29
0
36
34
1.58
99015804--99015880
7
10.6
7
73
8
55
25
0
38
35
1.57
99015850--99015916
34
2.0
34
84
0
89
31
1
37
29
1.67
99015961--99016014
21
2.5
22
80
11
60
18
0
42
38
1.50
99016004--99016045
15
2.8
15
82
13
59
14
2
33
50
1.56
99015961--99016026
22
3.0
22
78
10
57
18
1
40
39
1.60
99016266--99016347
26
3.2
26
83
8
98
47
6
3
42
1.45
99016541--99016652
42
2.7
41
86
8
156
39
12
23
25
1.89
99019028--99019914
241
3.7
241
98
0
1684
34
18
14
31
1.92
99020050--99020127
39
2.0
39
97
0
147
46
21
0
32
1.52
99020046--99020158
57
2.0
57
87
0
163
46
23
0
29
1.59
99020033--99020145
9
12.2
9
79
5
118
46
21
0
30
1.57
99026040--99026106
31
2.2
31
83
0
80
17
7
17
56
1.63
99026181--99026342
43
3.8
43
84
6
222
22
29
21
26
1.99
99026184--99026343
86
1.9
86
92
2
268
23
28
21
26
1.99
99030168--99030281
42
2.7
42
89
2
167
31
14
25
28
1.95
99033919--99034000
34
2.4
35
82
9
91
35
1
2
60
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99037435--99037466
11
3.1
11
91
8
50
68
0
0
31
0.90
99037435--99037470
14
2.6
13
87
12
54
69
0
0
30
0.89
99050648--99050681
18
1.9
18
88
5
52
55
11
5
26
1.58
99051969--99052002
13
2.6
13
95
0
59
64
0
0
35
0.94
99066855--99066922
16
4.2
16
94
0
118
27
0
33
38
1.57
99067136--99067177
15
2.7
16
82
14
52
52
2
0
45
1.13
99067145--99067186
15
2.9
15
82
10
52
52
0
0
47
1.00
99067254--99067305
15
3.6
15
80
12
56
53
1
0
44
1.11
99067376--99067416
14
2.7
16
85
14
68
46
4
0
48
1.23
99070057--99070175
62
2.0
60
85
12
163
38
31
12
17
1.87
99072074--99072109
9
3.8
9
89
10
54
36
0
0
63
0.94
99073634--99073677
20
2.1
22
84
12
58
34
4
4
56
1.40
99087628--99087717
44
2.1
43
81
6
101
43
15
8
32
1.78
99096407--99096482
22
3.7
21
75
15
68
40
17
5
36
1.72
99096443--99096514
17
3.9
18
87
7
101
36
15
9
38
1.80
99096844--99097043
45
4.5
45
85
2
233
24
29
14
31
1.95
99096861--99097027
89
1.9
89
85
0
235
26
31
14
28
1.95
99097060--99097351
78
3.7
77
87
2
406
25
23
18
33
1.97
99097152--99097951
287
2.8
276
82
6
858
25
23
18
32
1.97
99097425--99097716
78
3.7
78
89
1
442
24
23
19
32
1.97
99097028--99098046
365
2.8
364
93
1
1715
25
22
18
33
1.97
99097788--99098094
77
4.0
78
88
3
433
25
22
18
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99098067--99098228
89
1.8
89
85
5
231
27
24
18
30
1.98
99098020--99098228
87
2.4
88
80
7
239
26
22
19
31
1.97
99123808--99123839
11
3.1
11
91
8
50
68
0
0
31
0.90
99123808--99123843
14
2.6
13
87
12
54
69
0
0
30
0.89
99124878--99124908
16
1.9
16
93
0
53
3
16
45
35
1.63
99147104--99147179
35
2.1
36
97
2
145
44
0
14
40
1.45
99149198--99149235
2
19.0
2
88
0
58
44
0
52
2
1.14
99152946--99152980
18
1.9
18
88
0
52
48
5
0
45
1.26
99156690--99156715
3
8.7
3
100
0
52
34
34
0
30
1.58
99157779--99157835
28
2.0
28
100
0
114
43
10
3
42
1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318