genome.fa.s5.2.7.7.80.10.50.1000.289.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  289  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92170521--92170773	35	7.3	35	75	5	208	31	14	21	32	1.93
92170532--92170762	105	2.2	105	84	0	282	30	15	21	32	1.94
92175399--92175677	35	8.0	35	80	6	269	31	14	20	32	1.93
92175395--92175673	105	2.7	105	86	0	396	32	14	20	32	1.92
92176370--92176597	46	5.0	46	90	1	305	21	23	14	41	1.89
92178430--92178510	31	2.6	31	77	13	87	55	4	1	38	1.29
92183799--92183839	22	1.9	22	95	5	75	9	43	29	17	1.80
92184360--92184429	30	2.3	30	79	11	81	42	2	8	45	1.49
92203922--92203962	18	2.3	18	86	0	55	24	2	9	63	1.37
92208384--92208542	27	5.9	26	84	8	187	34	22	25	17	1.96
92208402--92208542	54	2.6	54	89	4	223	34	24	24	16	1.95
92210161--92210268	26	4.2	26	93	0	189	36	24	7	32	1.83
92211174--92211210	15	2.5	15	90	0	65	24	0	35	40	1.55
92211684--92211757	21	3.5	21	74	9	69	48	27	2	21	1.63
92211851--92211903	21	2.5	21	78	0	61	50	26	1	20	1.58
92212256--92212296	3	13.7	3	100	0	82	68	0	0	31	0.90
92212551--92212696	75	1.9	74	82	10	181	34	18	14	32	1.91
92212413--92212825	188	2.2	187	81	6	453	34	19	15	30	1.93
92214920--92214966	24	2.0	24	95	0	85	27	21	8	42	1.81
92215181--92215305	15	9.2	14	69	18	68	44	0	3	52	1.23
92215182--92215297	19	6.2	18	67	16	67	43	0	3	51	1.24
92215181--92215235	24	2.3	24	81	6	67	43	0	1	54	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92215181--92215275	39	2.4	39	94	0	163	41	1	4	53	1.27
92215201--92215272	20	3.7	20	68	17	60	41	1	4	52	1.29
92215188--92215236	25	2.0	25	84	8	64	44	0	2	53	1.12
92215250--92215307	30	2.0	30	89	3	91	48	0	0	51	1.00
92215578--92215610	9	3.7	9	91	0	57	45	24	0	30	1.53
92217113--92217141	14	2.1	14	93	6	51	34	0	10	55	1.34
92217554--92217616	21	3.0	21	81	4	83	30	19	47	3	1.64
92217858--92217918	31	2.0	31	93	0	104	14	9	22	52	1.71
92217999--92218281	43	6.6	43	89	0	386	26	33	20	19	1.96
92219962--92219998	18	2.1	18	94	0	65	29	2	5	62	1.31
92232033--92232123	44	2.1	44	89	4	139	49	9	10	29	1.70
92235184--92235233	17	2.8	18	77	17	52	34	4	4	58	1.36
92238496--92238604	54	2.0	54	98	0	209	36	21	16	25	1.94
92239551--92239581	9	3.3	9	95	4	53	41	0	0	58	0.98
92239552--92239598	24	1.9	24	82	4	58	42	4	0	53	1.20
92243347--92243371	6	4.2	6	100	0	50	84	0	0	16	0.63
92243626--92243663	18	2.2	17	86	9	51	18	7	5	68	1.34
92244748--92244877	64	2.0	64	98	0	251	26	13	19	40	1.89
92245156--92245285	64	2.0	64	100	0	260	26	14	18	40	1.89
92244728--92245544	408	2.0	408	98	0	1589	28	17	13	40	1.88
92247934--92248079	52	2.8	52	80	9	170	27	15	25	31	1.96
92255317--92255471	52	3.0	51	80	10	179	25	15	27	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92256261--92256298	20	1.9	20	100	0	76	21	36	31	10	1.87
92259853--92259912	30	2.0	30	90	0	93	53	3	8	35	1.48
92260890--92260944	26	2.1	27	80	10	69	43	0	5	50	1.25
92263485--92263522	18	2.1	18	95	0	67	36	10	28	23	1.88
92263917--92264040	47	2.6	48	87	5	162	26	30	18	24	1.98
92265413--92265634	68	3.4	65	76	10	220	23	29	15	31	1.95
92271304--92271341	17	2.2	17	95	0	67	65	10	5	18	1.41
92273272--92273360	29	3.2	29	62	26	73	44	17	4	32	1.69
92273268--92273377	55	2.0	55	100	0	220	41	18	5	34	1.73
92273270--92273355	26	3.2	26	66	15	75	44	19	5	30	1.74
92292943--92292971	14	2.1	14	100	0	58	48	20	0	31	1.50
92295130--92295412	27	10.4	27	80	3	138	31	22	9	36	1.86
92295225--92295325	28	3.6	28	86	4	125	40	21	8	28	1.83
92295225--92295649	27	15.7	27	73	9	143	37	19	10	32	1.86
92295464--92295648	54	3.4	54	77	1	199	40	17	9	32	1.83
92295670--92295742	27	2.7	27	79	8	85	36	20	21	20	1.95
92296454--92296520	20	3.3	20	85	4	91	41	10	16	31	1.82
92296570--92296700	26	5.2	26	87	2	180	29	20	22	27	1.98
92296838--92296929	42	2.2	42	90	0	139	30	14	20	34	1.92
92296953--92297031	31	2.5	31	97	0	149	29	18	26	25	1.98
92305638--92305693	25	2.4	23	85	14	71	35	1	5	57	1.32
92306550--92306592	22	2.0	22	95	0	77	37	0	2	60	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92306560--92306599	17	2.3	18	83	16	57	35	0	2	62	1.09
92309180--92309220	21	2.0	21	90	0	64	34	17	7	41	1.77
92310078--92310135	29	2.0	29	86	6	82	46	1	0	51	1.11
92310093--92310157	29	2.3	29	78	7	71	52	0	1	46	1.10
92310711--92310778	30	2.1	32	84	10	86	51	0	0	48	1.00
92317580--92317630	21	2.5	21	83	3	59	37	0	3	58	1.16
92327805--92327846	20	2.1	20	86	0	57	57	2	2	38	1.25
92332040--92332291	122	2.0	124	87	3	364	42	9	11	37	1.72
92341566--92341616	23	2.2	24	85	3	68	68	5	1	23	1.22
92349368--92349462	47	2.0	46	97	2	181	33	16	10	38	1.83
92349597--92349627	16	1.9	16	93	0	53	51	0	0	48	1.00
92352436--92352472	18	2.1	18	89	0	56	48	8	32	10	1.67
92359291--92359329	20	2.0	20	84	0	51	43	2	17	35	1.63
92370402--92370433	11	2.6	13	80	19	50	59	9	0	31	1.29
92370408--92370435	11	2.5	11	100	0	56	57	7	0	35	1.26
92372730--92372893	40	4.1	40	80	6	190	30	23	14	32	1.94
92372730--92372899	79	2.1	79	86	5	236	31	22	14	31	1.94
92374764--92374886	27	4.6	27	90	4	167	40	18	14	26	1.89
92380334--92380361	13	2.2	13	100	0	56	39	7	25	28	1.82
92380695--92380759	19	3.5	19	79	12	80	41	3	4	50	1.38
92380830--92380854	12	2.1	12	100	0	50	52	0	0	48	1.00
92383491--92383541	19	2.6	20	75	9	52	62	1	0	35	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92383482--92383581	39	2.6	39	80	13	109	62	2	2	34	1.18
92383943--92384039	10	10.0	9	69	17	52	29	2	6	61	1.31
92383952--92384039	39	2.3	38	79	15	99	30	2	5	61	1.31
92384278--92384352	28	2.7	26	78	13	87	45	6	2	45	1.43
92384776--92384845	24	2.9	24	79	14	74	30	0	7	62	1.21
92384776--92384846	36	2.0	36	88	0	106	30	0	7	61	1.22
92401796--92401832	12	3.0	13	84	11	51	29	40	18	10	1.85
92403880--92403936	20	2.9	20	76	2	62	56	3	3	36	1.34
92403924--92403981	20	2.8	22	75	15	70	63	0	5	31	1.16
92422939--92423329	206	1.9	206	88	3	590	51	13	7	27	1.67
92424124--92424258	67	2.0	67	91	2	218	51	10	10	27	1.68
92424417--92425195	280	2.8	281	85	2	1066	46	12	16	23	1.81
92426846--92427202	178	2.0	178	99	0	705	30	12	27	29	1.93
92432516--92432605	43	2.1	43	82	0	108	51	20	11	17	1.75
92432724--92432887	87	1.9	86	86	2	231	47	18	12	21	1.81
92432740--92432892	42	3.6	42	78	11	157	47	18	13	20	1.82
92434414--92434463	25	2.0	25	88	4	73	2	20	0	78	0.86
92435012--92435037	7	3.7	7	100	0	52	73	15	0	11	1.11
92435521--92435553	12	2.8	12	100	0	66	36	9	6	48	1.60
92441381--92441429	15	3.5	15	72	16	50	12	57	0	30	1.36
92442686--92442770	21	3.9	21	76	11	89	45	25	1	27	1.61
92442670--92442759	46	2.0	46	97	0	171	42	26	2	28	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92442935--92443111	81	2.2	81	90	4	277	15	22	24	37	1.93
92442935--92443111	41	4.4	40	91	4	275	15	22	24	37	1.93
92444654--92444692	21	1.9	20	89	5	60	71	12	2	12	1.24
92444809--92444897	35	2.4	37	87	9	128	39	11	13	35	1.80
92444809--92444897	19	4.8	19	86	8	139	39	11	13	35	1.80
92444809--92444920	19	5.7	22	81	14	83	38	9	14	37	1.79
92445187--92445222	18	1.9	19	88	5	56	30	0	0	69	0.89
92453333--92453493	89	1.8	87	82	5	207	31	16	22	29	1.96
92453216--92453780	220	2.6	220	91	1	882	32	17	21	28	1.96
92453747--92454041	78	3.8	78	87	1	412	32	17	23	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318