genome.fa.s5.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  121  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38071954--38072140	49	3.8	49	78	8	198	25	18	27	29	1.98
38075374--38075437	26	2.3	29	81	7	80	60	1	4	32	1.26
38075374--38075449	14	5.3	14	73	19	59	59	1	5	34	1.28
38079538--38079596	31	1.9	31	86	6	84	35	8	28	27	1.86
38080251--38080384	50	2.7	50	83	1	169	26	17	26	29	1.97
38080251--38080377	51	2.5	51	85	1	166	26	16	26	29	1.97
38096301--38096340	21	1.9	21	89	0	62	52	5	30	12	1.60
38097378--38097430	21	2.4	23	81	6	65	39	0	7	52	1.30
38099516--38099544	14	2.1	14	93	6	51	58	0	0	41	0.98
38100388--38100414	10	2.7	10	100	0	54	11	18	7	62	1.50
38106209--38106265	24	2.4	24	84	0	60	29	10	17	42	1.83
38110042--38110082	16	2.5	17	84	4	57	39	2	2	56	1.26
38110736--38110787	19	2.6	20	81	6	61	50	23	9	17	1.75
38111571--38111604	17	1.9	17	88	5	50	14	44	29	11	1.81
38114126--38114178	21	2.6	20	76	5	52	15	20	18	45	1.85
38114404--38114428	13	1.9	13	100	0	50	32	0	4	64	1.12
38115511--38115546	13	2.8	14	84	16	51	27	25	0	47	1.52
38115498--38115538	18	2.2	19	87	12	59	29	24	0	46	1.53
38115661--38115795	39	3.4	38	73	8	101	28	28	20	23	1.99
38116035--38116073	18	2.1	19	90	4	62	48	10	0	41	1.37
38117389--38117445	5	11.0	5	76	14	53	54	1	1	42	1.21
38117388--38117443	12	4.5	12	81	16	69	53	1	1	42	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38121118--38121266	74	2.0	74	100	0	298	28	8	12	51	1.67
38122864--38122906	5	8.6	5	84	0	59	0	34	4	60	1.17
38122860--38122902	20	2.2	20	100	0	86	0	34	4	60	1.17
38133903--38134345	131	3.4	129	77	10	415	37	19	16	26	1.92
38134972--38135001	16	1.9	16	93	6	53	70	3	0	26	1.03
38136241--38136438	89	2.2	88	89	0	288	31	19	21	28	1.97
38136297--38136770	89	5.3	89	70	12	273	27	21	19	31	1.98
38136316--38137330	134	7.6	134	77	8	919	28	22	19	30	1.98
38136385--38137157	45	17.3	45	69	16	228	28	21	18	30	1.97
38136363--38137330	268	3.6	267	84	4	1041	28	22	18	30	1.97
38136922--38137245	45	7.2	43	68	21	166	29	21	16	32	1.96
38137443--38137567	64	2.0	64	87	6	182	36	17	16	29	1.92
38148527--38148902	129	2.9	127	80	7	388	36	20	15	27	1.93
38149590--38149643	20	2.7	21	80	5	67	75	0	7	16	1.01
38152354--38152398	23	2.0	23	82	8	56	37	8	13	40	1.76
38159075--38159119	23	2.0	23	82	8	56	37	8	13	40	1.76
38162021--38162070	26	2.0	24	88	7	73	64	6	0	30	1.18
38163215--38163260	23	2.0	23	84	12	60	45	10	6	36	1.65
38163222--38163266	23	2.0	23	82	8	56	40	13	8	37	1.76
38164848--38164943	47	2.0	47	97	0	183	32	14	10	42	1.80
38168337--38168384	3	15.7	3	83	12	62	35	2	0	62	1.07
38168359--38168908	143	3.8	144	88	5	792	29	3	5	61	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38168507--38168597	26	3.4	27	74	19	77	31	0	5	62	1.18
38168358--38168908	287	1.9	290	88	5	848	29	3	5	61	1.34
38168776--38168825	3	16.3	3	88	12	75	34	0	0	66	0.92
38168770--38168817	24	2.0	25	95	4	89	29	2	0	68	1.01
38168502--38168908	144	2.7	149	86	6	449	29	3	5	61	1.34
38168842--38168980	72	1.9	73	86	2	199	32	5	5	56	1.47
38177837--38178225	76	5.1	76	89	4	539	28	17	20	33	1.96
38177830--38178225	155	2.6	151	86	4	569	28	17	20	34	1.95
38179881--38179943	3	20.7	3	77	9	65	36	4	0	58	1.19
38179873--38179943	9	7.7	9	81	9	63	38	4	0	57	1.18
38179879--38179931	18	2.9	18	86	5	72	37	5	0	56	1.23
38179960--38179990	6	5.2	6	100	0	62	32	0	16	51	1.44
38179962--38180007	18	2.5	18	85	3	56	36	0	10	52	1.37
38180073--38180102	3	9.7	3	92	7	51	36	0	0	63	0.95
38180354--38180389	3	11.7	3	88	5	54	36	2	0	61	1.11
38179974--38180664	143	4.8	142	87	5	898	30	4	5	60	1.38
38180426--38180480	13	4.5	12	80	8	58	32	0	0	67	0.91
38180437--38180486	25	2.0	25	88	3	75	26	2	2	70	1.09
38179906--38180664	287	2.6	287	83	7	933	30	4	5	59	1.38
38182112--38182153	22	1.9	22	90	0	66	69	0	0	30	0.89
38188259--38188301	18	2.2	20	84	8	54	44	9	0	46	1.35
38195573--38195709	68	2.0	68	98	0	265	31	32	21	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38195608--38195714	32	3.2	32	64	14	81	32	32	23	11	1.90
38203010--38203057	6	7.8	6	97	2	87	33	0	33	33	1.58
38203895--38204075	59	3.1	59	60	15	142	25	27	12	35	1.91
38203885--38204105	114	1.9	114	100	0	442	28	24	13	33	1.93
38210713--38210771	29	2.0	29	90	0	91	49	5	3	42	1.41
38214239--38214288	24	2.1	24	88	0	73	50	10	4	36	1.55
38215331--38215376	20	2.4	19	85	7	65	56	2	8	32	1.42
38217101--38217183	26	3.2	26	65	13	62	36	21	1	40	1.61
38217153--38217216	32	2.0	32	90	6	103	32	21	3	42	1.69
38217092--38217195	53	2.0	53	94	3	183	35	21	0	42	1.59
38227837--38227917	35	2.2	37	81	14	98	53	2	2	41	1.27
38231814--38231853	19	2.0	20	85	4	55	57	0	5	37	1.21
38231941--38231981	17	2.4	17	79	0	55	65	0	2	31	1.05
38241771--38241821	26	2.0	26	92	0	84	35	17	15	31	1.92
38244944--38245027	27	3.2	26	79	5	96	32	15	16	35	1.90
38250550--38250856	44	6.8	44	71	15	162	29	23	18	28	1.98
38250650--38250965	44	7.0	44	69	14	160	28	22	18	30	1.97
38250969--38251614	132	4.9	132	85	3	845	27	24	20	27	1.99
38250969--38251615	263	2.5	264	87	4	907	27	24	20	27	1.99
38251402--38251506	45	2.3	45	79	6	106	34	31	11	22	1.90
38259652--38259782	3	44.7	3	68	10	74	30	6	2	61	1.33
38259736--38259779	20	2.2	20	91	0	70	29	4	4	61	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38259656--38259782	11	11.6	11	66	17	59	30	6	2	60	1.34
38259686--38259781	28	3.8	26	74	14	78	29	6	2	62	1.31
38261293--38261372	43	1.9	43	82	5	101	57	5	6	31	1.45
38268642--38268714	28	2.5	29	82	6	76	26	0	4	69	1.06
38268664--38268714	15	3.4	15	73	15	52	21	0	5	72	1.05
38268660--38268722	21	2.8	23	86	13	87	23	0	4	71	1.05
38268659--38268719	30	2.1	29	84	9	79	24	0	4	70	1.07
38268660--38268719	28	2.1	28	87	9	86	23	0	5	71	1.05
38269430--38269471	20	2.0	22	90	9	70	69	4	0	26	1.08
38273370--38273395	4	6.5	4	100	0	52	0	0	23	76	0.78
38276838--38276913	38	2.0	38	94	0	134	38	14	10	36	1.81
38278360--38278424	31	2.1	31	97	0	121	56	7	9	26	1.57
38281627--38281698	21	3.3	21	79	14	67	50	2	11	36	1.53
38284959--38285033	33	2.3	32	80	6	89	41	10	1	46	1.47
38285701--38285734	17	2.0	17	88	0	50	38	5	8	47	1.59
38292433--38292538	53	2.0	53	100	0	212	41	15	11	32	1.82
38292438--38292520	26	3.2	26	62	21	64	43	15	8	32	1.77
38293164--38293227	21	3.0	21	70	4	58	42	15	25	17	1.88
38293314--38293361	24	2.0	24	91	0	78	18	27	10	43	1.82
38293421--38293513	45	2.1	45	89	4	143	44	16	1	38	1.55
38299776--38299961	27	6.9	27	88	2	266	30	25	7	37	1.83
38299764--38299959	81	2.4	80	91	1	302	29	26	7	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38299974--38300061	27	3.3	27	85	6	99	42	22	9	26	1.83
38299974--38300089	54	2.1	54	82	3	135	39	22	11	26	1.88
38299993--38300227	27	8.7	26	75	9	139	40	20	8	31	1.81
38299993--38300142	81	1.9	81	84	5	205	42	21	7	29	1.80
38299993--38300226	54	4.3	55	77	4	197	40	20	8	30	1.81
38301133--38301202	25	2.8	25	86	0	95	27	25	21	25	1.99
38301422--38301534	30	3.7	31	90	4	178	29	15	26	28	1.96
38301422--38301534	61	1.9	59	90	3	181	29	15	26	28	1.96
38310249--38310278	14	2.1	14	93	0	51	70	0	0	30	0.88
38310630--38310668	12	3.2	12	85	0	51	35	10	46	7	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318