genome.fa.s5.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  106  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34215911--34215977	14	4.7	14	88	3	98	37	7	17	37	1.79
34216374--34216499	46	2.7	46	92	0	198	44	22	6	26	1.76
34216409--34216483	24	3.2	24	68	21	68	45	22	8	24	1.79
34217448--34217508	32	1.9	32	93	0	104	49	18	4	27	1.68
34217448--34217521	32	2.5	30	85	10	91	50	18	4	27	1.65
34222264--34222403	31	4.5	31	86	3	194	26	27	17	28	1.98
34222263--34222403	61	2.3	62	88	1	212	26	26	17	28	1.98
34222379--34222506	50	2.5	51	87	2	177	25	22	16	35	1.95
34226409--34226584	42	4.0	42	79	12	176	31	26	13	28	1.94
34226479--34226584	49	2.2	48	89	3	158	33	26	12	27	1.92
34226494--34226662	47	3.6	47	84	4	171	31	26	14	27	1.95
34226684--34226832	31	4.8	31	85	0	181	28	25	18	27	1.98
34226808--34226936	50	2.5	51	87	2	188	26	22	15	35	1.94
34231195--34231223	13	2.2	13	100	0	58	20	31	27	20	1.98
34231755--34231788	17	1.9	17	88	5	50	44	23	0	32	1.54
34244750--34244857	55	2.0	55	88	0	162	12	32	29	25	1.92
34254631--34254681	24	2.1	24	92	0	84	33	13	27	25	1.94
34261243--34261333	45	2.0	45	95	0	164	25	25	16	32	1.96
34266023--34266074	23	2.3	23	83	9	63	21	11	3	63	1.43
34270855--34272115	686	1.8	685	85	5	1760	35	18	14	31	1.91
34272857--34272905	27	2.0	24	84	15	64	44	18	4	32	1.68
34273763--34273808	22	2.1	22	95	0	83	45	4	30	19	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34275391--34275418	6	4.7	6	100	0	56	85	0	0	14	0.59
34287859--34287910	27	1.9	27	84	0	68	34	21	23	21	1.97
34288674--34288847	27	6.5	26	84	5	222	25	20	17	37	1.93
34288677--34288847	54	3.2	54	87	3	247	25	19	16	37	1.93
34288674--34288847	80	2.2	81	88	5	255	25	20	17	37	1.93
34290369--34290405	11	3.4	11	88	0	56	2	24	16	56	1.53
34309963--34309997	17	2.1	17	94	0	61	25	11	8	54	1.64
34311479--34311512	9	3.8	9	85	14	52	11	0	2	85	0.71
34316878--34317007	19	6.7	21	80	12	68	39	16	8	36	1.79
34316878--34316935	22	2.6	22	81	7	64	41	17	5	36	1.72
34316914--34317058	19	7.9	19	89	9	239	37	14	11	37	1.82
34316914--34317058	54	2.7	54	97	1	272	37	14	11	37	1.82
34316907--34317059	73	2.1	71	89	8	238	36	15	10	37	1.81
34317390--34317490	45	2.3	45	91	1	168	23	28	13	33	1.93
34317612--34317887	86	3.2	85	65	14	211	27	20	18	33	1.96
34317555--34318036	175	2.8	175	89	3	762	27	21	19	31	1.97
34319124--34319180	19	3.1	19	78	12	64	7	7	0	85	0.73
34319130--34319180	26	1.9	26	84	4	66	7	5	0	86	0.71
34319132--34319181	19	2.7	19	87	3	75	8	8	0	84	0.79
34319130--34319191	18	3.4	17	77	16	61	6	9	0	83	0.79
34336000--34336144	19	7.9	19	84	9	194	35	16	11	36	1.85
34336014--34336123	17	6.5	15	82	8	69	37	15	10	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34336000--34336144	54	2.7	54	91	1	227	35	16	11	36	1.85
34336001--34336144	73	2.0	72	86	8	202	35	16	11	36	1.86
34338312--34338796	259	1.9	258	91	2	803	22	22	18	36	1.95
34339299--34339413	27	4.3	26	81	7	140	23	28	13	34	1.92
34339299--34339412	54	2.1	54	86	0	156	23	28	13	35	1.92
34345442--34345618	27	6.5	27	82	5	169	28	28	16	25	1.97
34345463--34345622	82	2.0	81	87	3	232	28	29	16	25	1.97
34352910--34353007	35	2.7	37	87	12	150	37	10	16	35	1.82
34352910--34353000	19	4.9	19	92	8	161	37	10	15	36	1.83
34352910--34353023	19	5.8	22	87	10	96	36	9	15	37	1.81
34363326--34363487	89	1.8	87	81	5	200	29	18	23	28	1.98
34363520--34363814	78	3.8	78	88	1	430	32	18	23	25	1.97
34363754--34364026	45	6.1	45	77	7	268	32	16	25	25	1.96
34363828--34364026	88	2.2	90	86	6	289	33	16	26	24	1.95
34364376--34364430	19	2.9	19	97	2	103	36	10	16	36	1.84
34364369--34364437	37	1.9	34	86	13	95	37	10	15	36	1.82
34364376--34364440	19	3.3	21	91	8	70	36	9	16	36	1.81
34364717--34364750	18	1.9	17	88	5	50	29	0	0	70	0.87
34368071--34368206	46	3.0	46	84	2	166	41	12	23	22	1.87
34368289--34368322	13	2.6	13	85	0	50	41	2	17	38	1.65
34368368--34368422	25	2.2	24	78	15	58	60	1	14	23	1.44
34375560--34375595	19	1.9	18	88	5	54	75	2	5	16	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34376538--34376626	20	4.3	20	75	14	65	24	31	30	13	1.94
34377267--34377309	22	2.0	22	86	9	61	81	4	0	13	0.84
34378782--34379070	3	96.0	3	70	14	143	60	2	6	31	1.34
34378775--34378837	25	2.6	23	72	20	65	60	1	4	33	1.27
34381338--34381421	26	3.2	26	93	0	141	34	5	22	36	1.79
34383041--34383180	27	5.2	27	86	2	174	17	23	22	35	1.95
34383041--34383180	54	2.6	55	88	2	194	17	23	22	35	1.95
34387124--34387207	26	3.2	26	96	0	150	34	5	23	35	1.80
34388826--34388938	27	4.2	27	82	3	120	17	23	22	36	1.95
34388824--34388947	54	2.3	54	84	2	160	17	25	22	34	1.96
34399472--34399519	20	2.5	20	76	10	55	39	10	2	47	1.49
34403112--34403158	6	8.2	6	79	15	55	80	0	14	4	0.85
34403106--34403158	17	3.2	16	82	10	63	79	0	15	5	0.91
34403112--34403158	16	2.8	17	87	9	69	80	0	14	4	0.85
34403101--34403155	27	2.0	27	82	6	67	78	0	16	5	0.93
34406358--34406424	20	3.5	20	80	11	86	65	29	2	1	1.16
34406680--34406759	41	1.9	42	89	2	126	36	27	22	13	1.92
34406961--34407041	21	3.6	22	76	14	94	29	1	25	43	1.63
34406967--34407057	46	2.0	46	93	4	157	30	2	25	41	1.67
34409752--34409792	20	2.0	20	100	0	82	24	9	14	51	1.72
34411081--34411114	17	1.9	18	94	5	61	35	11	29	23	1.90
34411433--34411612	43	4.2	43	83	2	220	25	19	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34411425--34411624	85	2.3	85	85	2	249	25	18	24	32	1.97
34411433--34411636	43	4.7	43	79	4	198	27	19	23	29	1.98
34413888--34413985	18	5.5	18	89	4	146	36	13	11	38	1.80
34413888--34413994	35	3.0	35	94	4	178	37	14	10	38	1.80
34415700--34415738	15	2.6	15	87	0	51	71	2	0	25	0.98
34418006--34418035	13	2.2	13	94	5	51	63	6	0	30	1.20
34418340--34418434	40	2.4	40	92	0	163	32	22	26	18	1.97
34418171--34418547	154	2.5	152	78	4	389	30	22	22	25	1.99
34418405--34418732	114	2.9	114	89	2	491	32	18	19	28	1.96
34419163--34419205	15	2.9	14	82	3	50	20	0	37	41	1.53
34419170--34419221	14	3.7	13	82	12	50	19	0	34	46	1.50
34419263--34419289	14	1.9	14	100	0	54	14	0	44	40	1.46
34424221--34424348	9	13.6	9	73	9	103	47	20	0	31	1.56
34424221--34424315	39	2.5	39	84	5	133	48	18	0	32	1.49
34424232--34424324	48	1.9	48	84	0	123	46	21	0	32	1.52
34428171--34428326	43	3.6	42	88	8	233	23	19	25	31	1.98
34428171--34428372	86	2.3	86	82	9	241	25	19	24	31	1.98
34432163--34432495	131	2.6	131	85	4	417	35	19	17	27	1.94
34434799--34435524	87	8.3	87	83	3	710	24	23	18	33	1.97
34435059--34435460	44	9.2	45	63	15	153	23	24	18	33	1.97
34435590--34435713	64	1.9	64	90	0	194	37	16	17	29	1.92
34447165--34447418	131	1.9	131	88	3	377	37	19	15	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34450946--34451212	54	4.9	54	77	7	193	39	15	16	29	1.89
34450946--34451212	108	2.5	108	81	4	281	39	15	16	29	1.89
34451350--34451380	12	2.5	13	94	5	55	58	0	12	29	1.35
34451740--34451772	16	2.0	17	88	5	50	45	0	6	48	1.27
34451806--34451867	23	2.7	23	80	2	72	45	1	1	51	1.20
34459637--34459708	34	2.1	34	87	5	101	25	11	15	48	1.77
34463423--34463489	35	1.9	35	96	0	125	38	22	8	29	1.85
34464534--34464623	46	2.0	46	100	0	180	24	20	14	41	1.89
34466839--34466890	22	2.3	23	77	12	54	46	40	3	9	1.55
34467910--34467937	5	5.6	5	100	0	56	21	0	0	78	0.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318