genome.fa.s5.2.7.7.80.10.50.1000.220.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  220  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69798702--69798926	27	8.4	27	81	4	215	40	16	12	29	1.86
69798731--69798940	54	3.9	53	83	5	246	40	16	13	29	1.87
69798702--69798936	81	2.9	79	87	4	301	40	17	12	29	1.86
69800816--69800890	22	3.3	22	65	17	62	26	30	10	32	1.90
69800788--69801044	47	5.4	47	91	3	365	27	31	8	32	1.88
69805958--69806278	40	8.1	40	89	1	475	25	27	22	24	2.00
69806332--69806406	38	2.0	38	84	5	98	24	28	18	29	1.98
69808836--69809139	47	6.4	47	91	3	459	26	30	9	33	1.88
69811482--69811592	27	4.1	27	86	0	150	41	18	12	27	1.87
69811507--69811610	54	1.9	54	84	3	138	39	19	14	26	1.90
69812019--69812108	27	3.3	27	73	0	72	23	21	16	38	1.92
69812094--69812154	32	1.9	32	89	0	95	26	21	21	31	1.98
69813047--69813155	43	2.5	43	82	5	132	32	14	22	31	1.94
69816826--69816852	5	5.4	5	100	0	54	77	0	0	22	0.76
69825448--69825526	37	2.1	37	86	4	106	26	30	17	25	1.97
69825644--69826057	47	8.7	47	96	0	738	29	28	9	31	1.88
69829508--69829664	40	3.9	40	89	0	233	24	26	22	26	2.00
69829521--69829743	40	5.6	40	82	5	215	24	26	22	26	2.00
69829513--69829743	120	1.9	120	82	5	288	24	26	22	25	2.00
69830051--69830129	29	2.7	29	86	5	106	27	32	15	24	1.95
69830111--69830213	43	2.4	43	100	0	206	26	35	15	22	1.94
69832066--69832144	37	2.1	37	88	4	115	26	31	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69832262--69832393	47	2.7	48	95	3	230	29	30	9	31	1.88
69836405--69836582	27	6.6	27	85	3	214	30	28	14	26	1.95
69836426--69836581	82	1.9	81	89	3	242	30	28	14	26	1.95
69841710--69841756	23	2.0	23	100	0	94	57	12	4	25	1.54
69844812--69844841	15	2.1	14	93	6	51	13	30	0	56	1.37
69850120--69850172	26	2.0	27	96	3	99	41	20	15	22	1.89
69854014--69854038	13	1.9	13	100	0	50	24	16	24	36	1.94
69855856--69856030	46	3.8	45	75	7	154	28	29	20	22	1.98
69855907--69856050	46	3.1	45	70	12	103	31	27	17	23	1.97
69858413--69858501	30	3.0	30	75	8	92	56	16	17	8	1.66
69858413--69858496	15	5.7	15	79	6	82	55	17	17	8	1.66
69861438--69861609	93	1.8	93	87	0	254	29	29	19	21	1.98
69861430--69861599	46	3.7	43	75	10	142	31	28	18	21	1.97
69865689--69865766	27	2.9	27	72	0	75	33	17	20	28	1.96
69865885--69865925	18	2.3	18	83	8	57	17	41	26	14	1.88
69878387--69878680	47	6.2	47	88	2	417	31	8	30	29	1.86
69878798--69878876	37	2.1	37	90	0	122	24	18	31	25	1.98
69883475--69883531	28	2.0	28	100	0	114	45	7	17	29	1.75
69883803--69883842	21	1.9	21	89	0	62	32	10	17	40	1.83
69895101--69895150	23	2.2	22	92	3	82	18	24	24	34	1.96
69898239--69898432	40	4.9	40	89	0	291	23	26	22	26	2.00
69919144--69919303	40	4.0	40	86	3	189	25	28	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69922049--69922153	27	3.9	26	81	9	106	34	11	18	36	1.86
69922024--69922153	54	2.4	55	81	7	142	33	11	16	37	1.85
69931258--69931381	43	2.9	43	84	2	133	26	15	23	34	1.94
69931309--69931401	43	2.2	43	82	0	105	26	16	24	32	1.96
69932175--69932224	22	2.3	20	78	18	55	20	4	26	50	1.66
69933610--69933738	46	2.9	43	83	10	145	24	28	23	23	1.99
69933624--69933738	46	2.6	44	87	8	155	25	28	24	21	1.99
69933731--69933891	38	4.2	38	91	0	259	29	25	23	21	1.99
69949145--69949228	27	3.1	27	72	6	80	26	20	15	38	1.92
69949206--69949310	28	3.8	27	77	8	77	23	23	20	31	1.98
69949128--69949253	54	2.3	53	78	10	130	25	23	17	34	1.96
69949269--69949525	57	4.6	57	76	11	224	25	21	19	33	1.97
69949235--69949503	28	9.6	28	76	11	196	23	22	20	33	1.97
69949242--69949574	86	3.9	84	78	8	309	25	21	19	34	1.96
69949325--69949590	112	2.3	115	78	7	281	24	20	19	34	1.96
69951843--69952015	43	4.0	43	81	4	181	31	28	16	23	1.96
69951846--69952005	86	1.9	86	83	6	209	31	30	15	23	1.95
69953973--69954172	42	4.6	42	70	11	143	30	25	16	28	1.96
69957143--69957202	26	2.3	26	85	5	86	20	20	21	38	1.94
69958563--69958733	93	1.8	93	92	0	288	20	21	30	28	1.98
69958567--69958741	46	3.8	46	79	15	198	20	20	30	28	1.98
69965175--69965349	41	4.3	41	78	6	142	18	21	16	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69965183--69965319	40	3.4	41	81	3	136	20	21	16	42	1.89
69975851--69975949	27	3.5	28	86	2	110	31	28	13	27	1.94
69978447--69978475	9	3.0	10	90	10	51	58	0	20	20	1.39
69984856--69985033	36	5.0	36	75	4	153	16	23	23	36	1.94
69984886--69984972	35	2.4	36	84	1	113	17	25	20	36	1.94
69992842--69992903	18	3.4	17	72	18	54	22	30	0	46	1.52
70001463--70001525	31	2.2	27	86	11	81	38	1	1	58	1.17
70005152--70005648	47	10.5	47	93	2	809	32	8	29	29	1.87
70005234--70005312	25	3.3	25	61	10	65	32	5	29	32	1.79
70005520--70005597	25	3.2	25	64	10	72	33	3	29	33	1.76
70005765--70005843	37	2.1	37	90	0	122	24	18	31	25	1.98
70008030--70008080	21	2.5	21	87	3	68	33	9	15	41	1.80
70010606--70010662	21	2.7	21	83	0	78	24	21	33	21	1.97
70011999--70012077	39	2.0	39	97	0	149	26	13	27	31	1.94
70016192--70016307	40	2.9	40	80	0	124	21	25	14	38	1.91
70022113--70022214	52	2.0	51	81	12	120	49	6	15	28	1.70
70023475--70023523	26	2.0	26	84	8	66	28	0	8	63	1.23
70023842--70023952	19	6.0	17	72	14	71	63	0	2	32	1.14
70023842--70023953	10	12.0	9	71	19	70	63	0	2	33	1.15
70023898--70023951	21	2.8	20	81	18	69	66	1	0	31	1.02
70024082--70024149	32	2.2	30	81	5	73	64	1	5	27	1.25
70024114--70024160	9	4.9	9	82	14	58	61	0	2	36	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70024110--70024169	30	2.0	30	90	0	93	58	0	3	38	1.15
70024571--70024610	21	2.0	21	90	5	64	20	27	42	10	1.83
70025822--70026203	48	7.9	48	80	1	424	27	26	17	28	1.97
70025826--70026203	96	3.9	95	89	2	551	27	26	16	28	1.97
70033714--70033937	48	4.7	48	81	3	254	25	25	17	30	1.97
70033661--70033941	96	2.9	96	88	2	375	26	25	16	31	1.96
70035405--70035449	19	2.4	19	85	7	56	33	2	4	60	1.29
70037604--70037715	42	2.7	41	89	8	163	30	13	24	32	1.93
70038037--70038063	14	1.9	14	100	0	54	14	7	14	62	1.51
70039386--70039425	20	2.0	20	85	9	55	32	5	22	40	1.76
70040818--70040927	9	12.6	9	79	5	73	68	7	10	14	1.39
70040818--70040938	3	40.3	3	77	0	53	66	6	9	17	1.40
70045178--70045219	21	2.0	21	100	0	84	23	9	14	52	1.71
70047661--70047747	44	2.0	44	93	0	147	19	12	11	56	1.66
70049946--70050112	42	4.0	41	82	4	190	30	26	14	28	1.95
70050436--70050498	30	2.2	29	77	11	67	36	20	6	36	1.78
70052938--70053015	39	2.0	39	100	0	156	25	17	28	28	1.98
70052962--70053068	53	2.0	53	96	0	196	27	16	29	26	1.97
70053015--70053118	39	2.7	39	78	0	109	25	19	25	28	1.98
70056622--70056742	42	2.8	43	75	5	111	26	23	21	28	1.99
70068864--70068964	37	2.7	37	84	6	132	25	23	16	33	1.96
70069218--70069256	20	1.9	21	89	5	62	53	12	2	30	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70071927--70071995	27	2.6	27	86	4	95	44	15	15	23	1.85
70078120--70078206	27	3.3	26	82	4	102	19	21	20	37	1.94
70086074--70086109	12	2.9	12	87	4	54	72	8	0	19	1.10
70086130--70086206	9	8.6	9	91	0	109	25	10	22	41	1.85
70091046--70091074	12	2.4	12	100	0	58	34	17	0	48	1.47
70101306--70101474	93	1.8	92	90	1	275	21	19	28	29	1.98
70101310--70101483	46	3.8	45	78	8	181	21	19	28	29	1.98
70103863--70103925	30	2.1	30	88	5	92	36	9	25	28	1.87
70104260--70104581	47	6.8	46	71	11	199	27	18	30	23	1.98
70104264--70104581	94	3.4	94	83	5	369	27	19	29	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318