genome.fa.s5.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  96  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31801179--31801225	21	2.2	21	88	0	67	29	0	19	51	1.47
31801313--31801532	110	2.0	110	94	0	386	36	13	20	29	1.91
31805126--31805573	35	12.5	35	70	13	142	23	20	16	38	1.92
31805162--31805611	73	6.2	73	78	4	376	23	22	16	37	1.93
31805240--31805611	145	2.6	141	79	10	401	23	22	16	37	1.93
31805555--31805630	38	2.0	38	86	0	107	23	23	17	35	1.95
31805565--31805644	38	2.1	38	80	0	88	26	26	15	32	1.95
31806225--31806524	44	6.8	44	71	5	178	30	16	22	30	1.96
31806225--31806480	133	1.9	133	81	6	313	30	16	23	30	1.96
31808740--31808842	18	5.7	18	77	0	107	33	13	16	35	1.88
31808749--31808842	36	2.6	36	81	3	127	35	12	15	36	1.86
31810612--31810711	50	2.0	50	100	0	200	56	18	12	14	1.68
31811459--31811506	21	2.5	20	86	10	64	31	10	4	54	1.53
31811836--31811869	16	2.1	16	89	10	52	23	11	8	55	1.63
31814798--31814883	41	2.1	41	95	0	154	25	15	9	50	1.73
31816117--31816142	7	3.7	7	100	0	52	30	0	0	69	0.89
31830852--31830928	14	5.0	15	71	20	52	42	14	9	33	1.77
31830868--31830907	20	2.0	20	90	0	62	50	12	10	27	1.72
31830856--31830922	34	1.9	35	90	3	109	46	13	8	31	1.74
31831184--31831242	30	2.0	30	83	9	77	57	11	13	16	1.65
31834828--31834915	47	1.9	45	86	9	124	42	1	11	45	1.47
31838504--31838605	50	2.0	50	100	0	204	30	13	21	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31839734--31839776	22	2.0	22	90	0	68	48	9	11	30	1.71
31840158--31840366	108	1.9	108	80	7	246	29	11	11	46	1.76
31844045--31844106	19	3.1	19	83	6	61	33	1	3	61	1.22
31851758--31851823	20	3.3	20	65	23	57	54	16	13	15	1.71
31851752--31851832	40	2.0	40	100	0	162	53	17	14	14	1.74
31854762--31854821	31	1.9	31	83	10	77	33	1	0	65	1.03
31857168--31857215	16	3.0	16	90	0	69	0	47	0	52	1.00
31857815--31857886	21	3.5	20	77	9	67	31	1	4	62	1.23
31857824--31857899	22	3.4	22	81	7	82	31	2	3	61	1.28
31857963--31858019	23	2.5	24	83	13	75	29	8	5	56	1.52
31858172--31858233	28	2.2	28	85	5	81	38	6	3	51	1.44
31879404--31879700	74	4.1	73	73	14	247	26	18	23	31	1.97
31879609--31879867	87	2.9	87	82	2	329	26	17	21	35	1.95
31879786--31879942	74	2.1	73	90	4	253	26	15	23	34	1.95
31879718--31880173	160	2.7	162	85	7	569	28	16	20	33	1.95
31879859--31880173	86	3.6	88	85	4	397	28	16	19	35	1.94
31880108--31880143	14	2.7	13	83	8	54	30	13	8	47	1.73
31879859--31880173	175	1.8	174	85	6	449	28	16	19	35	1.94
31881463--31881506	14	2.8	15	83	16	54	0	47	0	52	1.00
31881463--31881510	16	3.0	16	87	0	69	0	45	0	54	0.99
31882065--31882195	47	2.8	48	73	9	126	33	3	3	60	1.28
31882149--31882218	26	2.7	26	80	2	79	34	4	1	60	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31882261--31882317	23	2.5	24	83	13	75	29	8	5	56	1.52
31882474--31882535	28	2.2	28	85	5	81	38	6	3	51	1.44
31882874--31882907	16	2.1	17	94	5	61	20	5	11	61	1.50
31889026--31889104	25	2.9	27	80	19	85	55	1	2	40	1.21
31889540--31889573	14	2.4	14	100	0	68	20	26	0	52	1.46
31890285--31890323	20	1.9	21	84	5	53	38	10	2	48	1.51
31894520--31894575	24	2.3	24	93	0	94	35	12	8	42	1.74
31895018--31895080	31	2.0	31	93	0	108	25	12	1	60	1.42
31902974--31903014	21	2.0	21	90	0	64	19	29	21	29	1.98
31908590--31908616	6	4.5	6	100	0	54	14	14	0	70	1.17
31913197--31913258	31	2.0	31	100	0	124	35	16	16	32	1.91
31913980--31914040	31	2.0	31	100	0	122	26	13	14	45	1.81
31914823--31914855	17	1.9	17	88	11	50	27	3	3	66	1.21
31914948--31914974	3	9.0	3	100	0	54	33	0	0	66	0.92
31915638--31915691	20	2.7	19	80	8	63	40	0	0	59	0.98
31915966--31915992	13	2.1	13	100	0	54	55	29	7	7	1.55
31918890--31918923	17	1.9	18	88	5	52	38	0	5	55	1.24
31924940--31924964	2	12.5	2	100	0	50	52	0	0	48	1.00
31929019--31929088	26	2.7	26	91	2	115	22	34	20	22	1.97
31933346--31933406	32	1.9	32	86	3	88	22	22	16	37	1.93
31933608--31933689	24	3.4	24	94	1	137	26	21	20	30	1.98
31933747--31933799	9	5.4	9	75	16	52	37	20	7	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31933739--31933805	20	3.3	20	89	0	107	34	20	10	34	1.87
31933739--31933794	11	5.5	11	75	16	57	33	19	10	35	1.87
31933842--31933889	25	1.9	25	86	0	69	25	16	25	33	1.96
31937747--31937785	20	2.0	20	90	10	62	30	2	0	66	1.05
31938085--31938160	33	2.3	34	81	6	93	56	1	2	39	1.21
31938142--31938202	23	2.6	25	76	10	65	54	4	1	39	1.32
31942982--31943106	46	2.7	46	93	2	207	23	16	24	36	1.94
31955982--31956087	53	2.0	53	96	0	194	37	6	17	37	1.76
31960052--31960108	15	3.9	15	90	2	89	36	0	12	50	1.40
31960481--31960567	21	4.0	23	80	10	92	14	21	25	37	1.92
31967582--31967606	13	1.9	13	100	0	50	4	24	40	32	1.73
31968874--31968907	14	2.4	15	90	9	54	47	41	0	11	1.40
31969189--31969226	20	1.9	20	88	0	58	26	28	34	10	1.90
31974601--31974654	24	2.2	24	84	9	74	40	18	3	37	1.69
31986128--31986174	24	2.0	24	83	8	60	46	4	19	29	1.68
31986180--31986261	21	3.7	21	67	15	58	56	3	4	35	1.39
31986169--31986267	44	2.4	39	75	17	92	57	5	4	33	1.39
31987608--31988051	46	9.6	46	90	1	593	20	25	14	39	1.91
31992168--31992580	88	4.8	84	85	6	526	35	19	19	25	1.95
31992168--31992580	172	2.4	171	85	6	568	35	19	19	25	1.95
32018263--32018309	24	2.0	24	83	8	60	46	4	19	29	1.68
32020733--32020784	24	2.3	22	86	6	68	75	3	21	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32027486--32027514	3	9.7	3	100	0	58	68	0	0	31	0.89
32042648--32042672	5	5.0	5	100	0	50	40	20	0	40	1.52
32049138--32049167	6	5.2	6	92	8	53	0	83	0	16	0.65
32049138--32049167	11	2.6	11	94	5	51	0	83	0	16	0.65
32050812--32050845	17	2.0	17	94	0	59	73	0	0	26	0.83
32050819--32050858	20	2.1	20	86	9	57	72	0	0	27	0.85
32050849--32050885	18	2.1	18	89	0	56	59	2	5	32	1.34
32050824--32050875	26	2.0	27	88	3	79	63	0	1	34	1.06
32051662--32051692	15	2.1	15	93	0	53	38	0	6	54	1.26
32051835--32051888	24	2.2	25	80	6	67	20	3	1	74	1.07
32051837--32051888	25	2.1	24	85	3	68	19	3	1	75	1.06
32051838--32051905	23	3.0	23	80	6	68	20	5	1	72	1.14
32061788--32061826	16	2.4	16	86	0	51	43	28	5	23	1.75
32061985--32062080	30	3.2	30	92	0	165	18	6	48	26	1.71
32062905--32064092	75	15.5	75	73	12	731	32	21	16	28	1.96
32062905--32064092	154	7.7	150	73	13	634	32	21	16	28	1.96
32062906--32064197	230	5.6	225	79	9	932	33	21	16	28	1.95
32063337--32064092	73	9.9	73	76	10	602	32	23	16	27	1.96
32069023--32069053	14	2.2	14	100	0	62	9	32	9	48	1.69
32079554--32080844	232	5.5	232	78	11	1001	28	16	21	33	1.95
32079875--32080795	78	11.9	76	72	12	493	29	16	20	33	1.95
32079643--32080791	310	3.7	300	77	10	798	28	16	21	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32080342--32080756	75	5.5	75	81	6	430	31	17	20	31	1.95
32082463--32082517	25	2.3	23	78	12	58	43	3	16	36	1.65
32082543--32082711	76	2.2	73	78	9	167	57	4	6	31	1.43
32082660--32082790	25	5.5	24	73	13	94	55	3	6	35	1.40
32082591--32082696	25	4.0	28	68	20	77	59	4	6	29	1.43
32083072--32083110	16	2.4	16	86	0	51	43	28	5	23	1.75
32083268--32083362	30	3.2	30	86	0	145	18	6	48	26	1.72
32098096--32098134	20	2.0	20	90	10	62	35	12	5	46	1.65
32099319--32099371	21	2.5	21	82	14	65	47	1	1	49	1.23
32099501--32099530	11	2.6	11	94	5	51	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318