genome.fa.s5.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  155  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48614118--48614166	18	2.8	17	75	6	53	75	4	10	10	1.17
48618413--48618479	21	3.1	21	82	4	71	34	32	2	29	1.73
48619341--48619372	15	2.0	17	88	11	50	34	18	21	25	1.96
48621230--48621261	15	2.1	15	100	0	64	59	21	6	12	1.55
48622308--48622375	9	7.6	9	77	6	66	45	19	7	27	1.76
48622307--48622377	27	2.6	27	82	4	81	45	19	7	28	1.76
48622434--48622458	13	1.9	13	100	0	50	12	0	48	40	1.40
48622435--48622472	18	2.1	18	95	0	67	7	2	47	42	1.46
48622565--48622611	19	2.5	19	89	0	67	44	12	12	29	1.80
48623932--48623971	11	3.6	11	83	12	55	42	0	0	57	0.98
48630844--48630891	22	2.2	22	84	0	60	41	4	18	35	1.70
48659066--48659109	21	2.1	21	100	0	88	27	18	9	45	1.79
48663187--48663251	29	2.4	27	82	7	69	58	1	9	30	1.39
48665358--48665861	133	3.8	133	88	2	735	29	24	17	28	1.97
48665284--48665861	265	2.2	266	87	3	845	30	23	17	28	1.97
48665753--48665953	88	2.3	88	83	4	280	30	22	18	27	1.97
48665630--48666069	221	2.0	220	92	2	740	29	23	18	28	1.98
48665929--48666125	45	4.4	44	68	11	114	25	27	17	29	1.97
48665850--48666141	133	2.2	133	92	0	485	29	25	18	27	1.98
48671673--48671734	30	2.1	30	93	0	106	41	30	16	11	1.83
48672454--48672490	18	2.1	18	89	0	56	62	5	0	32	1.18
48672690--48672754	29	2.4	27	82	7	69	58	1	9	30	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48674013--48674049	17	2.1	17	90	5	56	70	5	18	5	1.27
48674547--48674594	9	5.3	9	94	0	87	22	41	10	25	1.85
48680352--48680504	42	3.6	42	80	5	157	30	26	14	28	1.95
48687322--48687494	46	3.7	46	75	13	174	30	28	19	21	1.98
48687330--48687500	93	1.8	93	91	0	279	29	28	20	21	1.98
48687327--48687516	46	4.1	44	71	17	127	29	28	20	22	1.98
48694319--48694358	9	4.6	9	87	12	57	67	0	0	32	0.91
48700189--48700393	53	3.8	53	75	3	194	36	17	24	21	1.94
48707546--48707771	40	5.7	40	88	4	305	26	26	21	24	1.99
48715623--48715808	40	4.7	40	88	5	243	26	27	22	24	2.00
48721785--48721991	53	3.8	53	74	6	175	39	17	23	20	1.92
48723569--48723731	81	2.0	81	97	0	308	34	14	19	31	1.92
48723595--48723728	38	3.4	39	66	14	103	35	13	17	32	1.89
48729862--48729909	15	3.3	15	73	5	53	31	0	25	43	1.55
48729856--48729915	29	2.1	29	90	0	93	30	0	28	41	1.56
48734205--48734241	12	3.0	12	92	4	56	16	5	5	72	1.21
48735933--48736158	40	5.7	40	88	4	289	25	22	26	26	2.00
48735940--48736191	80	3.2	79	81	9	280	26	20	25	26	1.99
48735933--48736191	120	2.2	120	80	8	280	26	21	26	26	1.99
48758227--48758398	46	3.7	46	76	14	183	22	19	28	29	1.98
48758220--48758390	93	1.8	93	89	2	272	23	20	27	28	1.99
48778477--48778680	40	5.1	40	86	2	268	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48778988--48779066	29	2.7	29	82	5	97	27	31	16	24	1.96
48779048--48779150	43	2.4	43	100	0	206	26	35	15	22	1.94
48783252--48783455	40	5.1	40	86	2	268	25	27	22	24	2.00
48783763--48783841	29	2.7	29	82	5	97	27	31	16	24	1.96
48783823--48783925	43	2.4	43	100	0	206	26	35	15	22	1.94
48795328--48795549	67	3.4	64	78	9	232	31	14	29	24	1.95
48798954--48799089	27	5.1	27	91	4	168	43	19	14	22	1.87
48812293--48812427	54	2.4	56	86	4	202	27	13	25	34	1.93
48813556--48813667	55	2.0	55	94	0	197	30	5	18	45	1.72
48815985--48816114	27	4.8	26	85	4	161	26	23	17	32	1.97
48815987--48816114	54	2.4	54	87	0	184	26	23	17	32	1.96
48818449--48818487	20	2.0	19	85	14	53	53	15	0	30	1.42
48819745--48819879	45	3.1	45	79	11	138	35	25	15	23	1.94
48819745--48819864	41	2.8	42	78	13	120	34	26	15	23	1.95
48823661--48823685	13	1.9	13	100	0	50	88	4	8	0	0.64
48824761--48824983	39	5.7	40	85	8	266	25	22	27	24	2.00
48824761--48824983	79	2.8	81	84	9	282	25	22	27	24	2.00
48824761--48825016	79	3.3	79	81	10	217	26	21	27	24	1.99
48831480--48831504	13	1.9	13	100	0	50	88	4	8	0	0.64
48832583--48832841	39	6.6	40	85	9	306	25	21	27	25	1.99
48865413--48865442	9	3.3	9	90	0	51	10	70	0	20	1.16
48876374--48876399	13	2.0	13	100	0	52	15	0	0	84	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48882119--48882215	28	3.5	28	90	2	133	31	27	13	26	1.94
48882662--48882687	12	2.2	12	100	0	52	42	0	7	50	1.31
48892107--48892145	20	2.0	20	85	10	53	23	2	10	64	1.37
48894167--48894248	43	1.9	43	90	5	130	26	13	24	35	1.92
48894169--48894280	43	2.6	43	81	5	120	25	14	25	34	1.94
48900573--48900680	37	2.9	37	91	1	164	28	30	18	22	1.97
48900821--48901536	48	15.0	48	84	8	910	30	28	6	34	1.82
48900827--48901536	96	7.5	96	88	7	1056	30	28	6	34	1.82
48900821--48901532	199	3.7	194	86	9	1029	30	28	6	34	1.82
48901309--48901377	34	2.0	34	94	0	120	27	27	7	37	1.83
48901261--48901520	82	3.0	82	88	7	349	30	27	6	35	1.82
48901212--48901536	130	2.4	132	88	8	476	31	27	6	35	1.81
48901343--48901536	95	2.0	96	95	1	354	31	26	5	35	1.80
48904486--48904561	27	2.8	27	72	7	73	34	21	17	27	1.95
48904522--48904575	27	2.0	27	85	7	74	40	18	12	27	1.87
48905883--48905913	15	2.0	16	93	6	55	58	22	0	19	1.40
48924394--48924441	21	2.2	22	81	3	53	52	20	4	22	1.64
48928474--48928645	93	1.8	93	92	2	292	29	28	20	21	1.98
48928467--48928642	46	3.8	46	77	14	191	30	28	20	21	1.98
48928518--48928661	46	3.1	44	76	15	141	29	28	20	22	1.98
48936025--48936196	93	1.8	93	93	0	299	27	28	21	22	1.99
48936018--48936193	46	3.8	46	78	12	198	28	28	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48936067--48936205	47	3.0	46	74	16	135	29	28	19	23	1.98
48951880--48951970	43	2.1	43	89	0	137	21	25	27	25	2.00
48952063--48952102	20	1.9	22	85	10	57	57	20	5	17	1.58
48953616--48953675	20	3.0	20	75	0	66	33	18	30	18	1.95
48953597--48953672	40	1.9	40	86	0	107	32	17	31	18	1.94
48953618--48953782	40	4.1	40	88	1	233	36	15	30	17	1.91
48953640--48953786	20	7.3	20	68	7	102	36	17	29	17	1.93
48953790--48954115	161	2.0	162	93	1	566	41	16	5	37	1.71
48961711--48961750	19	2.1	19	95	0	71	72	5	2	20	1.15
48962119--48962178	27	2.3	26	82	2	66	36	20	21	21	1.95
48962465--48962509	19	2.4	19	96	0	81	13	35	20	31	1.91
48963660--48963711	27	1.9	27	84	7	70	55	21	3	19	1.58
48965959--48966146	40	4.7	40	90	3	299	26	22	26	25	2.00
48965959--48966179	80	2.8	80	85	6	299	27	22	26	24	2.00
48970549--48970670	47	2.6	47	96	0	217	37	13	22	25	1.92
48970649--48970806	54	2.9	54	89	0	226	36	15	23	24	1.94
48971476--48971540	31	2.1	32	91	5	107	30	24	13	30	1.94
48982811--48982875	31	2.1	32	91	5	107	29	23	15	32	1.95
48983122--48983216	25	3.8	25	87	4	138	27	23	24	25	2.00
48983109--48983216	50	2.2	50	85	8	141	26	23	22	27	1.99
48985095--48985201	53	2.0	53	87	3	153	33	19	26	20	1.97
48996089--48996219	47	2.8	47	83	1	154	23	15	27	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48998155--48998202	15	3.4	14	82	8	62	18	2	31	47	1.60
48998205--48998280	22	3.5	22	78	5	84	17	1	43	38	1.57
48998474--48998530	21	2.7	20	82	15	71	28	0	31	40	1.57
48998494--48998561	28	2.4	28	83	11	77	27	0	30	41	1.56
49000007--49000045	20	2.0	20	100	0	78	20	15	10	53	1.70
49000910--49001483	99	5.7	99	75	12	578	35	6	4	53	1.47
49000897--49001553	197	3.2	203	90	6	1062	35	7	4	53	1.48
49001582--49001862	9	32.8	9	70	16	120	45	14	2	37	1.57
49001577--49001868	64	4.6	64	94	0	467	46	15	2	36	1.57
49001645--49001814	25	7.0	25	67	19	80	48	15	1	35	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318