Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  150  of  318  ( 38109 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46837000--46837028
14
2.1
14
100
0
58
20
6
13
58
1.58
46843621--46843731
34
3.3
34
78
5
125
34
21
7
36
1.81
46850750--46850860
34
3.3
34
87
0
159
36
21
6
36
1.79
46852094--46852154
30
2.0
30
100
0
122
47
19
9
22
1.79
46853368--46853452
42
2.0
42
86
6
120
24
18
28
28
1.98
46853368--46853482
41
2.8
41
82
6
108
24
19
28
27
1.98
46853531--46853561
16
1.9
16
100
0
62
58
9
12
19
1.62
46858474--46858500
12
2.2
12
100
0
54
51
7
0
40
1.30
46858982--46859138
27
5.8
27
83
4
190
27
15
28
29
1.96
46858983--46859138
82
1.9
81
88
3
233
26
15
28
29
1.96
46858982--46859136
55
2.9
54
83
3
195
27
15
27
29
1.96
46876267--46876362
40
2.4
40
81
10
115
32
14
23
29
1.94
46877707--46877743
14
2.5
16
83
16
53
27
0
24
48
1.51
46881223--46881297
38
2.0
38
91
0
123
21
22
26
29
1.99
46881290--46881414
43
2.9
42
84
4
169
16
24
30
29
1.96
46881731--46881857
45
2.9
43
79
14
127
23
22
29
25
1.99
46887662--46888102
47
9.6
47
92
3
720
31
7
31
29
1.85
46894464--46894506
19
2.3
19
95
0
77
32
20
4
41
1.73
46894686--46894788
41
2.4
43
76
9
122
29
20
19
31
1.97
46901412--46901490
41
1.9
42
81
2
97
31
22
16
29
1.96
46913163--46913318
43
3.7
42
80
7
172
31
24
16
28
1.96
46917594--46917725
32
4.1
32
70
10
99
48
10
11
29
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46918100--46918164
19
3.4
19
73
14
62
61
4
1
32
1.26
46918118--46918247
28
4.6
28
73
14
97
60
6
2
31
1.34
46918118--46918247
29
4.6
27
72
15
102
60
6
2
31
1.34
46918219--46918268
10
5.0
10
80
7
57
60
4
2
34
1.27
46918216--46918268
20
2.7
20
82
5
63
62
3
1
32
1.24
46918621--46918845
29
8.0
27
69
18
122
32
2
5
60
1.33
46918621--46918853
10
24.8
9
69
13
116
31
2
5
60
1.34
46918775--46918857
18
4.5
18
76
11
71
34
2
6
56
1.37
46918621--46918849
122
1.9
122
80
10
272
31
2
5
59
1.34
46919033--46919091
26
2.3
25
80
13
66
30
1
3
64
1.20
46919002--46919199
9
21.4
9
72
16
113
32
1
4
62
1.20
46919073--46919206
46
2.8
47
77
14
139
34
0
5
60
1.19
46919239--46919355
58
2.0
58
100
0
234
34
14
15
35
1.88
46919662--46919706
15
2.9
15
86
3
54
31
2
0
66
1.04
46930458--46930513
26
2.2
26
93
0
94
25
28
8
37
1.86
46934739--46934780
20
2.2
19
87
12
59
16
21
4
57
1.58
46937045--46937150
27
3.9
27
83
9
126
38
22
21
16
1.93
46937042--46937150
54
2.0
54
85
3
148
39
22
22
16
1.92
46938568--46938618
24
2.1
24
88
0
75
23
37
0
39
1.55
46940436--46940502
30
2.2
30
97
0
125
14
35
26
22
1.93
46945788--46946201
189
2.2
189
84
2
542
31
20
12
35
1.90
46945788--46946231
95
4.7
95
82
3
482
31
19
12
36
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46945788--46946231
190
2.3
189
82
4
543
31
19
12
36
1.89
46952765--46952802
14
2.7
14
91
0
58
36
18
7
36
1.80
46954791--46955015
40
5.7
40
85
7
289
24
22
27
25
2.00
46954791--46955015
79
2.8
80
83
9
289
24
22
27
25
2.00
46954791--46955013
119
1.9
119
84
6
290
24
22
27
25
2.00
46961597--46961778
28
6.5
28
96
0
303
32
28
12
26
1.93
46966292--46966512
40
5.7
40
79
11
203
25
21
26
26
1.99
46966345--46966512
75
2.2
78
84
9
211
25
20
27
27
1.99
46966387--46966545
80
2.1
74
80
11
169
25
20
28
26
1.99
46974638--46974822
40
4.6
39
83
5
203
24
22
27
25
2.00
46974639--46974854
79
2.7
78
79
10
233
26
21
27
24
1.99
46981474--46981551
31
2.5
31
80
0
84
23
30
33
12
1.92
46982536--46982656
55
2.2
55
82
7
147
25
32
21
20
1.98
46983946--46983988
21
2.0
21
95
0
77
18
20
23
37
1.94
46984722--46984916
49
3.9
49
85
2
264
26
18
26
28
1.98
46984724--46984916
100
1.9
100
95
0
350
26
19
25
28
1.99
46990105--46990400
47
6.5
44
74
9
218
24
27
18
29
1.98
46990104--46990400
94
3.2
90
82
6
362
24
27
18
29
1.98
46993965--46993989
6
4.2
6
100
0
50
68
16
0
16
1.22
46997459--46997557
34
2.9
33
80
4
108
20
24
23
32
1.98
46999171--46999224
15
3.4
16
82
12
58
38
1
0
59
1.08
46999968--46999997
15
1.9
16
93
6
53
56
0
3
40
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47000038--47000087
15
3.1
16
74
20
50
54
0
0
46
1.00
47000329--47000383
27
2.1
26
86
10
76
54
3
3
38
1.36
47007555--47007636
36
2.3
36
84
0
110
39
15
9
35
1.81
47007554--47007636
18
4.6
18
83
0
94
39
15
9
34
1.80
47007780--47007880
44
2.3
44
81
6
107
33
21
22
21
1.97
47009228--47009264
19
2.0
18
89
5
56
51
2
0
45
1.15
47010353--47010390
18
2.2
17
86
9
51
21
7
2
68
1.28
47014240--47014292
25
2.1
25
100
0
106
30
11
16
41
1.84
47020880--47020911
16
2.0
16
100
0
64
43
12
6
37
1.68
47024163--47024301
48
2.9
48
86
0
197
25
15
30
28
1.95
47024163--47024336
48
3.6
48
83
7
194
25
14
31
28
1.95
47040137--47040161
7
3.6
7
100
0
50
44
40
0
16
1.47
47047853--47047942
32
2.8
32
93
0
144
26
11
24
37
1.89
47047857--47047982
32
3.9
33
86
5
134
29
12
23
34
1.92
47054258--47054416
32
4.9
32
88
2
203
30
10
22
36
1.88
47060247--47060417
93
1.8
93
93
0
297
21
22
28
27
1.99
47060251--47060422
46
3.7
46
78
13
199
21
22
27
27
1.99
47063189--47063512
48
6.8
48
86
1
373
27
16
28
26
1.97
47063189--47063512
144
2.2
143
84
3
416
27
16
28
26
1.97
47064802--47064848
22
2.1
22
92
0
76
14
23
29
31
1.95
47065129--47065164
15
2.4
15
90
0
54
36
5
0
58
1.22
47069233--47069288
27
2.0
28
93
6
96
46
10
7
35
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47070992--47071102
45
2.5
45
93
0
186
33
9
9
46
1.70
47071519--47071585
32
2.1
32
83
5
82
43
2
25
28
1.69
47071764--47071892
58
2.2
59
88
4
190
51
3
0
44
1.25
47071764--47071906
59
2.4
58
86
6
191
51
3
1
43
1.27
47080413--47080479
34
2.0
34
100
0
134
37
23
5
32
1.79
47080416--47080470
17
3.2
17
68
27
53
40
23
5
30
1.77
47086193--47086273
40
2.0
40
87
0
117
20
22
27
29
1.99
47086234--47086333
28
3.6
27
84
8
137
22
17
29
32
1.96
47091699--47091737
19
2.1
19
85
0
51
2
30
0
66
1.05
47095831--47095872
22
1.9
22
85
9
59
66
9
7
16
1.42
47096542--47096582
21
2.0
21
95
0
73
17
14
17
51
1.77
47100248--47100287
20
2.0
20
100
0
80
35
5
20
40
1.74
47100527--47100581
21
2.6
21
82
2
56
12
12
16
58
1.64
47100791--47100823
16
1.9
18
88
11
52
45
0
0
54
0.99
47104368--47104402
13
2.7
13
86
0
52
40
2
0
57
1.14
47106616--47106703
41
2.1
42
85
2
115
26
2
11
60
1.43
47106715--47106768
18
2.9
19
71
17
60
24
7
16
51
1.69
47106752--47106817
34
2.0
33
87
3
96
18
9
10
62
1.53
47112182--47112225
23
1.9
23
90
0
70
38
2
0
59
1.10
47115908--47115973
26
2.6
25
76
4
69
34
18
22
24
1.96
47122737--47122792
24
2.3
24
84
6
69
12
14
25
48
1.78
47123315--47123376
28
2.2
28
88
5
90
35
16
24
24
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47131259--47131283
13
1.9
13
100
0
50
36
0
8
56
1.29
47131240--47131376
70
1.9
71
94
1
240
38
2
8
51
1.44
47131266--47131376
32
3.3
32
66
18
89
36
2
7
53
1.43
47131295--47131459
89
1.9
89
86
5
237
36
1
7
53
1.41
47135431--47135477
13
3.6
13
82
8
60
44
0
2
53
1.12
47135440--47135482
18
2.4
19
80
7
54
48
0
4
46
1.22
47135543--47135622
40
2.0
40
100
0
160
35
10
22
32
1.87
47136157--47136215
22
2.7
22
81
0
64
30
22
18
28
1.97
47136873--47136947
20
3.6
20
77
15
73
38
1
5
54
1.31
47148770--47148808
21
1.9
20
84
5
51
12
7
0
79
0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318