genome.fa.s5.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  139  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43082392--43082620	45	5.1	45	77	10	243	25	28	16	29	1.96
43082406--43082620	89	2.4	90	83	9	253	26	29	16	28	1.97
43082560--43083098	78	6.8	78	89	5	803	25	24	18	31	1.98
43082489--43083036	244	2.2	244	94	1	954	24	25	18	31	1.97
43094920--43094944	13	1.9	13	100	0	50	56	20	8	16	1.65
43095647--43095680	17	2.1	17	88	5	52	70	0	0	29	0.87
43095970--43096060	35	2.5	37	91	8	150	36	15	10	37	1.83
43095970--43096060	19	4.9	19	92	8	161	36	15	10	37	1.83
43099653--43099708	23	2.4	24	79	8	71	16	16	28	39	1.89
43114220--43114390	92	1.8	93	93	1	299	28	29	20	21	1.98
43114213--43114387	46	3.8	46	78	14	198	29	29	20	20	1.97
43119843--43119896	22	2.5	22	84	3	65	24	0	3	72	1.01
43120665--43120697	16	2.1	17	88	11	52	81	0	0	18	0.68
43128539--43128565	6	4.5	6	100	0	54	33	0	18	48	1.49
43136624--43136661	19	2.0	20	89	5	60	36	0	13	50	1.42
43140047--43140171	47	2.7	47	83	0	151	33	27	15	24	1.95
43144137--43144184	23	2.1	23	84	7	62	18	4	4	72	1.17
43148617--43148688	27	2.7	28	80	8	87	37	15	23	23	1.93
43148616--43148697	27	3.0	27	80	3	85	35	14	24	25	1.94
43153014--43153061	25	2.0	24	87	4	69	20	2	4	72	1.11
43153066--43153090	9	2.8	9	100	0	50	56	0	0	44	0.99
43154740--43154770	3	10.3	3	100	0	62	0	35	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43164351--43164408	28	2.1	28	100	0	116	29	17	13	39	1.88
43164559--43164583	6	4.2	6	100	0	50	16	0	0	84	0.63
43164626--43164654	15	2.0	15	93	6	51	0	17	0	82	0.66
43186938--43187006	34	2.0	35	85	2	95	24	26	20	28	1.99
43190798--43190881	20	4.2	20	75	6	80	15	27	15	41	1.87
43190818--43190914	40	2.4	40	86	6	126	17	29	15	37	1.91
43190807--43190892	20	4.3	20	72	8	68	15	31	15	38	1.88
43194850--43194958	32	3.2	32	64	22	78	35	7	11	44	1.69
43194830--43194970	70	2.0	70	97	0	264	36	8	12	43	1.72
43198967--43199017	18	2.9	18	75	13	61	17	0	21	60	1.36
43207976--43208012	18	2.0	19	89	5	58	10	37	0	51	1.37
43210935--43211275	47	7.3	47	91	0	540	28	29	9	33	1.88
43214337--43214434	28	3.5	28	76	5	117	28	33	18	19	1.95
43214364--43214466	28	3.6	28	74	11	111	30	28	18	23	1.98
43214337--43214463	56	2.3	56	94	0	227	29	31	18	20	1.97
43214669--43214819	40	3.8	40	96	0	266	25	29	24	20	1.99
43214855--43214967	38	3.0	38	78	8	88	28	30	15	25	1.96
43214896--43214989	38	2.5	38	89	0	134	24	27	17	30	1.97
43216941--43217329	47	8.3	47	92	0	607	28	29	9	33	1.88
43225051--43225108	29	2.0	29	100	0	116	37	13	17	31	1.89
43226618--43226708	44	2.1	44	95	0	164	29	3	24	42	1.70
43227092--43227125	15	2.3	15	94	0	59	20	23	29	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43228112--43228211	46	2.2	46	85	1	128	24	18	21	37	1.94
43228097--43228211	47	2.5	47	83	4	137	24	17	20	37	1.94
43238454--43238623	86	2.0	86	100	0	340	39	15	19	25	1.91
43247406--43247546	55	2.5	53	79	10	140	27	31	25	14	1.95
43247943--43247987	16	2.8	16	76	10	56	22	2	2	73	1.05
43251026--43251098	37	2.0	37	94	0	128	27	34	8	30	1.86
43254347--43254460	44	2.7	43	82	6	119	23	14	28	34	1.93
43254367--43254460	44	2.2	43	85	7	122	22	14	28	34	1.94
43254609--43254687	40	2.0	40	94	0	140	40	6	18	34	1.76
43254621--43254691	19	3.7	19	71	15	65	39	5	19	35	1.76
43258470--43258535	32	2.1	32	100	0	132	33	21	24	21	1.97
43262265--43262299	17	2.1	17	100	0	70	37	5	11	45	1.64
43273470--43273507	19	2.0	20	85	15	53	39	23	0	36	1.55
43273736--43273901	46	3.6	46	78	11	194	29	28	19	22	1.98
43273737--43273907	93	1.8	93	92	0	288	29	28	19	22	1.98
43273782--43273923	46	3.1	45	72	18	114	29	28	18	23	1.98
43277391--43277576	46	3.9	48	73	9	134	23	30	19	26	1.98
43283250--43283292	22	1.9	23	86	13	63	27	9	11	51	1.69
43283929--43283986	30	2.0	29	83	10	73	48	12	8	31	1.70
43283940--43284017	31	2.6	30	83	6	86	43	14	10	32	1.78
43286193--43286225	12	2.8	12	100	0	66	9	24	42	24	1.83
43287246--43287305	19	3.1	19	75	13	68	36	20	30	13	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43287229--43287328	19	5.2	20	68	10	64	31	20	33	16	1.94
43287212--43287338	39	3.3	39	88	1	184	33	19	29	16	1.94
43295409--43295449	20	2.0	20	100	0	82	39	9	4	46	1.58
43303381--43303419	18	2.2	18	95	0	69	58	10	2	28	1.44
43303453--43303516	29	2.2	29	91	5	103	28	23	4	43	1.73
43306752--43306776	9	2.8	9	100	0	50	0	0	12	88	0.53
43309636--43309707	21	3.5	21	80	1	74	22	33	29	15	1.94
43310927--43311096	43	4.0	43	77	6	184	27	15	24	32	1.95
43311885--43311977	47	2.0	47	89	4	143	17	33	23	25	1.96
43313178--43313243	19	3.6	18	77	16	64	69	7	0	22	1.13
43316313--43316367	20	2.8	20	97	0	101	21	32	34	10	1.89
43326877--43326947	35	2.0	35	94	0	124	16	16	19	46	1.84
43327466--43327494	15	1.9	15	100	0	58	44	27	6	20	1.77
43330330--43330386	22	2.7	21	84	12	73	36	7	8	47	1.62
43331182--43331220	18	2.2	18	85	0	51	56	7	5	30	1.49
43331254--43331317	29	2.2	29	83	5	76	28	28	1	42	1.65
43332086--43332161	26	2.9	26	80	0	89	23	11	22	42	1.87
43339547--43339616	35	2.0	35	97	0	131	24	17	21	37	1.94
43349330--43349421	40	2.3	40	80	7	100	38	34	11	15	1.84
43354682--43354791	31	3.5	31	87	0	139	31	25	14	28	1.95
43355012--43355081	25	2.8	25	93	0	113	24	22	25	27	2.00
43355872--43355950	27	2.9	27	92	3	124	20	27	22	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43355989--43356297	27	11.4	27	77	6	223	30	10	21	38	1.86
43356257--43356320	27	2.4	27	78	0	74	28	6	26	39	1.80
43356306--43356508	27	7.6	27	90	1	318	37	9	25	27	1.87
43356306--43356535	81	2.9	81	86	0	264	36	9	25	29	1.87
43358815--43358924	31	3.6	31	91	1	177	29	23	18	29	1.98
43359149--43359239	25	3.6	25	89	4	139	24	21	26	27	1.99
43360345--43360423	27	2.9	26	76	14	70	25	25	17	31	1.97
43360467--43360790	27	12.0	27	77	6	172	30	8	20	40	1.83
43360577--43360758	81	2.3	79	86	4	240	27	8	22	41	1.83
43360573--43360785	54	4.0	53	82	3	230	28	8	22	40	1.83
43360578--43360778	80	2.5	81	85	2	253	28	8	22	39	1.84
43360469--43360799	54	6.1	54	74	8	224	30	8	21	39	1.83
43360736--43360799	27	2.4	27	76	10	76	29	6	25	39	1.80
43360785--43360988	27	7.6	27	87	2	248	42	8	20	28	1.81
43360785--43360988	54	3.8	54	86	1	275	42	8	20	28	1.81
43362322--43362382	30	2.1	29	90	3	95	37	21	14	26	1.92
43371962--43372003	6	7.3	6	83	5	52	78	2	0	19	0.86
43373561--43373603	6	7.2	6	84	7	52	76	0	2	20	0.89
43373561--43373603	19	2.4	19	88	7	63	76	0	2	20	0.89
43373552--43373623	22	3.1	22	76	9	56	72	0	11	16	1.12
43377333--43377510	28	6.4	28	86	2	225	25	12	29	32	1.93
43377358--43377510	83	1.8	83	87	2	227	26	13	28	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43394342--43394373	15	2.1	15	100	0	64	28	6	18	46	1.73
43398259--43398285	14	1.9	14	100	0	54	37	29	7	25	1.83
43401059--43401211	28	5.5	28	91	1	229	31	29	13	26	1.93
43401059--43401211	83	1.8	83	88	2	236	31	29	13	26	1.93
43401058--43401236	56	3.2	55	87	2	223	31	30	13	25	1.94
43416938--43417005	29	2.3	29	85	5	93	27	30	13	27	1.94
43417243--43417320	29	2.7	30	82	11	108	29	29	15	25	1.96
43425092--43425367	145	1.9	145	96	0	507	31	23	14	29	1.95
43425348--43425415	29	2.3	29	85	5	93	27	30	13	27	1.94
43425205--43425564	174	2.1	174	96	0	666	30	25	14	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318