Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  99  of  318  ( 38109 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32504430--32504546
30
3.9
29
77
11
94
44
3
22
29
1.69
32504445--32504546
30
3.4
30
84
2
134
44
3
22
29
1.71
32504622--32504836
110
2.0
110
100
0
430
36
15
10
36
1.83
32505003--32505055
20
2.7
20
88
5
72
26
20
20
32
1.98
32507387--32507412
3
8.7
3
100
0
52
65
0
0
34
0.93
32507704--32507752
15
3.3
15
76
0
53
24
0
2
73
0.94
32507704--32507756
22
2.4
22
75
12
63
24
0
1
73
0.93
32507701--32507765
29
2.3
29
84
12
82
30
0
3
66
1.07
32515458--32515506
26
2.0
24
84
11
64
63
6
0
30
1.19
32515485--32515535
21
2.4
21
83
6
59
70
7
1
19
1.21
32521896--32522081
39
4.7
39
87
1
264
27
27
24
19
1.99
32521896--32522083
79
2.4
78
84
1
268
27
27
24
20
1.99
32522119--32522164
24
1.9
24
100
0
92
41
28
0
30
1.56
32522834--32522925
24
3.8
24
94
0
148
35
30
13
20
1.91
32522789--32522922
48
2.8
48
83
0
151
34
29
12
23
1.92
32522789--32522925
72
1.9
72
84
0
184
34
29
12
23
1.91
32524102--32524135
17
2.0
17
94
0
59
38
5
0
55
1.24
32527314--32527360
19
2.5
19
92
0
76
12
23
12
51
1.74
32535581--32535617
17
2.2
17
100
0
74
16
0
16
67
1.23
32535589--32535627
17
2.3
17
86
0
51
15
5
12
66
1.41
32540530--32540664
50
2.7
50
84
0
180
18
19
31
30
1.96
32545949--32546015
23
2.9
23
78
10
57
16
5
5
71
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32545967--32546016
23
2.1
24
85
3
66
16
6
2
76
1.08
32547352--32547457
18
5.4
20
68
16
78
59
1
0
37
1.15
32547339--32547466
37
3.4
35
75
15
96
63
2
0
33
1.13
32547357--32547400
20
2.2
20
87
4
61
61
0
0
38
0.96
32547367--32547466
20
5.2
19
68
18
64
61
3
0
36
1.12
32548194--32548297
49
2.1
48
82
6
129
31
7
2
57
1.42
32548263--32548330
19
3.5
19
72
7
55
27
5
1
64
1.25
32555968--32556125
86
1.8
86
88
0
244
32
17
14
35
1.90
32558783--32558857
37
2.0
37
97
0
141
42
10
5
41
1.62
32562574--32562642
27
2.7
26
84
6
95
63
0
2
33
1.09
32562578--32562642
25
2.5
26
85
7
80
63
0
3
33
1.10
32562585--32562642
25
2.2
26
84
6
82
63
0
3
32
1.11
32564501--32564558
27
2.1
27
96
0
107
44
5
12
37
1.64
32564949--32565002
20
2.6
21
82
11
67
35
0
7
57
1.27
32564988--32565036
3
17.3
3
76
19
52
28
2
0
69
1.00
32564992--32565030
11
3.5
11
92
0
69
28
2
0
69
1.02
32564988--32565029
19
2.2
19
87
8
59
26
2
0
71
0.98
32573285--32573319
18
1.9
18
88
0
52
25
11
20
42
1.85
32573370--32573560
18
10.6
18
74
12
160
36
16
12
34
1.86
32573371--32573572
72
2.8
71
81
5
228
36
15
12
35
1.86
32573734--32573883
45
3.3
45
90
0
183
39
20
20
20
1.93
32574292--32574338
5
9.2
5
90
4
58
36
25
0
38
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32575718--32575742
13
1.9
13
100
0
50
16
12
0
72
1.13
32575741--32575793
23
2.3
23
84
12
65
37
3
1
56
1.28
32575761--32575813
22
2.3
23
84
9
65
37
5
3
52
1.43
32579496--32579555
27
2.3
25
82
8
66
35
20
21
23
1.96
32581181--32581219
20
1.9
20
84
5
51
66
5
0
28
1.12
32589977--32590065
38
2.3
38
86
5
115
38
1
5
55
1.31
32593236--32593318
42
2.0
43
85
2
114
26
14
22
36
1.93
32593237--32593331
42
2.2
42
81
1
109
29
15
21
33
1.94
32593178--32593349
43
4.0
43
70
14
138
29
16
22
31
1.96
32600297--32600390
36
2.6
36
81
1
109
41
13
8
36
1.75
32600337--32600390
18
3.0
18
77
0
63
40
14
7
37
1.74
32600415--32600464
18
2.7
19
75
6
57
54
8
6
32
1.54
32600635--32600743
45
2.4
45
87
3
157
42
19
18
20
1.90
32601791--32601834
4
11.2
4
81
13
56
0
27
0
72
0.85
32601785--32601825
20
2.2
18
91
8
64
0
26
0
73
0.84
32605097--32605146
23
2.0
23
81
11
55
56
12
12
20
1.67
32610557--32610597
18
2.3
18
87
8
57
48
2
2
46
1.28
32615020--32615048
13
2.2
13
100
0
58
48
17
13
20
1.81
32616045--32616164
43
2.8
42
74
7
116
29
25
15
30
1.95
32618152--32618222
29
2.4
30
81
13
94
32
2
16
47
1.61
32620185--32620229
24
1.9
23
86
13
65
57
6
4
31
1.44
32623846--32623916
31
2.3
31
83
9
83
45
5
9
39
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32629611--32629708
49
2.0
49
100
0
196
34
8
16
40
1.78
32631515--32632068
114
4.9
113
90
1
858
26
20
26
26
1.99
32631510--32632068
227
2.5
228
91
2
872
27
20
26
26
1.99
32631968--32632125
73
2.2
72
88
1
226
25
21
23
29
1.99
32632478--32632521
17
2.7
17
89
6
65
29
0
27
43
1.55
32632799--32632836
14
2.7
15
84
12
53
26
0
28
44
1.54
32632859--32632890
15
2.2
14
94
5
55
25
0
37
37
1.56
32632856--32632927
29
2.5
30
69
15
69
25
2
37
34
1.70
32633333--32633433
47
2.2
46
90
3
157
48
7
0
43
1.32
32636548--32636577
14
2.1
14
100
0
60
23
43
0
33
1.54
32637740--32637769
15
2.0
15
93
0
51
50
0
33
16
1.46
32637986--32638041
22
2.5
23
79
5
60
39
1
1
57
1.20
32638002--32638034
16
2.1
16
88
5
50
36
0
3
60
1.12
32638123--32638267
43
3.3
43
86
2
157
28
16
27
27
1.97
32638166--32638289
43
2.9
43
86
0
176
28
19
26
25
1.99
32639126--32639164
19
2.0
20
90
5
62
58
2
2
35
1.25
32639126--32639174
17
2.6
19
81
9
57
59
4
2
34
1.28
32640104--32640167
18
3.4
18
70
19
58
54
4
9
31
1.53
32641290--32641336
20
2.4
20
85
3
60
27
0
8
63
1.23
32643708--32643754
21
2.2
22
78
17
55
44
4
17
34
1.68
32645865--32645919
24
2.2
26
84
12
71
61
7
5
25
1.44
32647552--32648024
44
10.6
43
75
8
365
27
20
21
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32647552--32648024
89
5.3
89
77
6
431
27
20
21
30
1.98
32647544--32647981
224
2.0
225
81
5
530
27
20
20
31
1.97
32647544--32648078
135
4.0
136
76
7
373
26
21
21
30
1.98
32647595--32648024
179
2.4
179
86
1
585
27
21
21
30
1.98
32659159--32659211
26
2.0
26
100
0
106
43
22
7
26
1.80
32661151--32661189
20
2.0
20
89
0
60
48
15
17
17
1.81
32663409--32663485
3
26.0
3
87
7
113
70
0
28
1
0.96
32663506--32663545
21
1.9
21
94
0
71
22
30
20
27
1.98
32664899--32664947
23
2.0
25
85
14
68
12
8
10
69
1.37
32671407--32671480
37
2.0
37
91
0
121
22
10
6
59
1.54
32674040--32674102
31
2.0
31
96
0
117
39
3
14
42
1.61
32684932--32684964
12
2.8
12
100
0
66
66
0
9
24
1.20
32685854--32685901
10
4.9
10
76
2
53
66
2
6
25
1.26
32685925--32685954
15
2.0
15
93
0
51
40
10
0
50
1.36
32687813--32687865
26
2.0
27
85
7
74
24
15
22
37
1.92
32692859--32692892
14
2.5
14
90
4
52
76
0
2
20
0.92
32695136--32695176
18
2.3
18
100
0
82
34
21
26
17
1.95
32695625--32695657
12
2.8
12
100
0
66
66
0
9
24
1.20
32696547--32696594
20
2.5
20
86
3
62
64
2
6
27
1.28
32696618--32696647
15
2.0
15
93
0
51
40
10
0
50
1.36
32698496--32698533
20
1.9
20
88
0
58
42
2
0
55
1.14
32702854--32702908
23
2.4
24
81
9
69
63
7
3
25
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32702865--32702906
22
1.9
22
90
0
66
61
7
2
28
1.35
32704424--32704476
23
2.2
24
83
3
63
60
7
1
30
1.35
32705252--32705468
88
2.5
88
84
3
260
36
21
21
20
1.95
32705667--32705909
86
2.8
85
82
6
310
36
23
20
20
1.95
32705577--32706127
43
12.8
42
68
12
242
35
23
21
20
1.96
32705754--32706031
129
2.2
129
89
1
414
33
23
21
21
1.97
32705738--32706127
216
1.8
215
93
0
672
34
22
23
20
1.97
32706019--32706164
44
3.3
44
74
11
138
33
23
26
17
1.96
32705882--32706166
87
3.3
86
89
2
401
32
23
23
20
1.98
32707177--32707221
21
2.2
21
88
4
65
6
13
0
80
0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318