genome.fa.s5.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  147  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45664345--45664382	16	2.5	16	87	8	53	36	0	0	63	0.95
45665278--45665309	9	3.7	9	95	4	57	46	6	0	46	1.27
45665861--45665916	22	2.6	22	86	8	71	53	1	5	39	1.34
45666538--45666574	19	2.1	19	90	10	60	62	2	0	35	1.10
45672100--45672159	17	3.5	17	74	21	63	65	0	1	33	1.03
45672642--45672749	18	5.9	18	92	4	173	37	14	11	37	1.82
45672642--45672749	35	3.0	36	91	8	175	37	14	11	37	1.82
45672645--45672757	53	2.1	54	88	8	169	38	13	12	36	1.82
45673133--45673485	83	4.2	83	94	0	598	27	20	20	32	1.97
45673409--45674003	119	5.0	119	93	2	1002	29	18	17	33	1.94
45673409--45674003	233	2.5	238	93	2	1020	29	18	17	33	1.94
45673989--45674183	44	4.4	44	71	11	157	26	24	16	32	1.96
45675046--45675129	1	84.0	1	71	0	60	0	14	0	85	0.59
45675046--45675129	22	3.9	21	84	9	107	0	14	0	85	0.59
45675064--45675126	32	2.0	32	90	6	101	0	15	0	84	0.63
45675046--45675129	21	3.9	22	89	7	120	0	14	0	85	0.59
45681373--45681489	18	6.6	18	92	3	184	35	12	12	38	1.82
45681373--45681497	35	3.5	36	89	7	184	36	13	12	38	1.82
45681373--45681497	53	2.3	54	93	2	216	36	13	12	38	1.82
45689960--45690009	5	9.6	5	95	4	82	18	0	0	82	0.68
45690142--45690179	5	7.6	5	88	11	60	18	0	0	81	0.69
45692937--45692999	30	2.1	30	96	0	117	57	12	3	26	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45712368--45712413	11	4.4	11	81	8	51	28	26	0	45	1.54
45712368--45712409	22	1.9	22	90	9	68	26	28	0	45	1.54
45712367--45712413	20	2.2	21	82	17	62	27	27	0	44	1.55
45713595--45713633	7	5.6	7	87	0	60	28	0	12	58	1.34
45714224--45714264	18	2.3	18	86	0	55	19	29	7	43	1.78
45714520--45714566	21	2.2	21	84	0	58	29	40	23	6	1.79
45714670--45715043	129	2.9	130	93	2	612	34	4	4	55	1.41
45714905--45714949	17	2.8	17	74	19	51	31	0	0	68	0.89
45722931--45722965	17	2.1	17	100	0	70	17	40	20	22	1.92
45723382--45723468	30	2.9	29	70	10	68	40	4	20	34	1.73
45723366--45723516	60	2.5	60	82	1	176	43	3	15	37	1.64
45724743--45724774	16	2.0	16	100	0	64	31	12	25	31	1.92
45737132--45737260	50	2.5	51	91	2	206	35	17	23	24	1.95
45737236--45737384	31	4.8	31	93	0	244	26	19	28	26	1.99
45737437--45737563	49	2.8	48	87	9	167	29	14	26	29	1.95
45737498--45737595	42	2.3	42	87	3	135	31	14	26	27	1.95
45747258--45747301	19	2.3	19	88	0	61	43	2	2	52	1.26
45748010--45748067	23	2.5	23	77	0	62	31	3	12	53	1.54
45760039--45760085	19	2.4	19	82	3	58	40	2	6	51	1.39
45777628--45777706	30	2.6	30	78	11	79	25	22	15	36	1.93
45777690--45777760	29	2.4	29	85	2	97	21	28	9	40	1.85
45777537--45777812	121	2.3	119	79	11	291	23	25	11	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45777746--45777812	29	2.5	26	80	11	73	26	25	7	40	1.82
45779551--45779594	18	2.4	19	80	7	54	75	13	4	6	1.17
45780294--45780346	29	1.9	26	85	11	70	50	3	18	26	1.64
45780853--45781024	43	4.0	43	90	6	244	26	19	26	28	1.99
45786262--45786486	40	5.7	40	82	5	260	25	21	27	25	1.99
45786349--45786519	80	2.2	79	82	6	204	27	20	27	24	1.99
45786262--45786519	119	2.2	119	80	6	274	26	20	27	25	1.99
45793562--45793786	40	5.7	40	81	5	251	24	21	27	26	1.99
45798970--45799179	40	5.3	40	92	0	314	24	20	28	26	1.99
45798917--45799179	80	3.3	80	85	2	316	24	20	27	26	1.99
45798917--45799179	120	2.2	120	83	3	325	24	20	27	26	1.99
45798970--45799214	80	3.1	80	85	2	253	25	20	28	25	1.99
45805883--45806105	40	5.6	40	86	3	236	24	21	27	26	1.99
45805958--45806140	79	2.3	80	82	1	226	25	20	27	25	1.99
45813019--45813080	25	2.5	25	97	2	117	38	3	40	17	1.66
45814141--45814204	26	2.4	26	84	5	74	32	25	12	29	1.92
45814312--45814420	27	4.0	26	81	8	119	16	23	22	37	1.93
45814312--45814420	54	2.0	54	85	3	148	16	23	22	37	1.93
45821703--45821781	39	2.0	39	100	0	158	45	10	5	39	1.60
45822912--45823135	61	3.6	62	81	5	267	20	23	25	30	1.99
45822912--45823141	122	1.9	124	88	3	349	21	23	25	30	1.99
45828590--45828625	18	2.0	18	88	0	54	22	11	16	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45832474--45832521	20	2.5	20	76	13	55	35	6	0	58	1.23
45835574--45835623	10	5.0	10	82	0	64	24	2	2	72	1.06
45837297--45837331	15	2.3	15	90	0	52	65	0	0	34	0.93
45837287--45837330	21	2.1	20	83	8	52	63	0	0	36	0.95
45837679--45837732	26	2.1	25	86	10	74	40	0	0	59	0.98
45837658--45837738	26	3.0	27	75	17	69	41	2	1	54	1.21
45844245--45844279	11	3.2	11	88	11	54	0	54	0	45	0.99
45844746--45844813	3	22.3	3	73	8	57	30	0	7	61	1.23
45844753--45844817	23	2.8	23	86	9	87	32	0	9	58	1.30
45844832--45844881	13	3.8	13	75	20	50	28	8	0	64	1.22
45844914--45844952	3	13.0	3	83	0	51	28	2	0	69	1.02
45845219--45845280	20	3.2	20	80	15	67	33	3	1	61	1.22
45845634--45845699	19	3.4	19	70	16	55	36	10	1	51	1.46
45858107--45858283	35	4.8	36	76	19	129	28	19	22	29	1.98
45858055--45858281	74	3.0	76	74	20	231	29	19	22	28	1.98
45858064--45858311	74	3.3	76	72	19	205	30	19	21	28	1.98
45858176--45858435	113	2.2	117	81	12	279	29	20	22	27	1.98
45859789--45859861	3	24.0	3	78	8	67	30	6	2	60	1.37
45859789--45859865	12	6.1	12	80	8	82	29	7	2	59	1.39
45863578--45863628	21	2.4	22	77	6	61	74	1	1	21	1.02
45875500--45876958	72	19.6	71	74	13	860	30	16	20	32	1.95
45875500--45875709	71	2.9	73	91	2	325	30	17	21	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45875584--45875833	135	1.9	125	81	8	293	29	18	23	28	1.98
45875713--45876958	72	16.4	72	79	11	1187	30	16	20	32	1.95
45875713--45876953	222	5.5	217	82	11	1395	30	16	20	32	1.95
45878840--45878871	15	2.0	17	88	11	50	31	0	6	62	1.20
45879474--45879518	17	2.6	18	89	10	76	31	8	8	51	1.64
45882601--45882658	29	2.0	30	89	3	91	50	0	0	50	1.00
45882582--45882667	29	2.9	29	80	13	79	52	0	1	46	1.08
45886332--45886366	12	2.8	13	86	8	54	74	0	25	0	0.82
45905938--45905971	16	2.1	17	88	5	52	14	0	8	76	1.01
45908936--45908978	22	2.0	22	90	9	70	51	11	0	37	1.39
45917199--45917229	13	2.4	13	100	0	62	54	6	0	38	1.26
45917206--45917238	17	1.9	17	100	0	66	54	6	0	39	1.25
45926075--45926326	46	5.5	44	73	13	172	26	20	28	23	1.99
45926064--45926326	138	1.9	136	83	7	343	26	20	29	24	1.99
45926166--45926336	94	1.8	94	85	5	240	26	21	28	23	1.99
45931962--45932012	22	2.4	22	96	3	95	15	37	35	11	1.84
45934594--45934628	18	1.9	18	88	0	52	22	17	14	45	1.84
45934772--45934810	6	6.5	6	96	0	69	46	15	20	17	1.84
45937016--45937210	55	3.6	53	78	6	169	22	25	17	35	1.95
45937314--45937409	40	2.4	40	94	1	165	54	12	6	27	1.61
45938633--45938670	17	2.1	19	90	9	62	0	23	0	76	0.79
45945907--45946161	55	4.8	55	79	10	257	36	17	24	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45945917--45946122	108	1.9	109	88	5	310	35	16	24	22	1.95
45946358--45946388	16	1.9	16	93	0	53	41	0	22	35	1.54
45960233--45960281	19	2.4	21	83	10	57	77	0	4	18	0.92
45965711--45965794	42	2.0	42	100	0	168	40	9	9	40	1.70
45966252--45966290	20	2.0	20	89	0	60	35	17	17	28	1.94
45968547--45968728	47	3.8	49	75	12	164	25	18	31	24	1.98
45986920--45987073	28	5.5	28	94	0	256	25	11	28	33	1.91
45986895--45987073	56	3.2	56	89	1	261	25	11	28	34	1.91
45990745--45990871	61	2.1	62	80	4	141	36	8	9	45	1.67
45991025--45991079	18	3.1	18	78	2	58	74	0	1	23	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318