Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  151  of  318  ( 38109 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47159481--47159615
43
3.1
43
84
6
166
34
26
14
25
1.94
47165570--47165594
13
1.9
13
100
0
50
20
24
32
24
1.98
47167284--47167309
9
2.9
9
100
0
52
46
30
0
23
1.53
47168141--47168189
8
6.1
8
92
0
53
61
0
0
38
0.96
47168129--47168206
13
6.1
13
72
15
56
64
0
0
35
0.94
47168126--47168184
16
3.9
16
80
12
72
57
0
0
42
0.98
47168172--47168208
9
4.2
9
96
3
67
78
0
0
21
0.75
47175298--47175412
48
2.5
46
83
9
144
26
16
31
26
1.97
47183996--47184037
8
5.2
8
85
0
57
57
0
2
40
1.12
47184029--47184075
22
2.1
23
84
4
60
72
2
12
12
1.21
47201383--47201487
43
2.5
43
82
3
124
27
19
23
29
1.98
47201383--47201500
41
2.8
42
79
11
127
26
18
24
30
1.98
47212914--47212952
21
1.9
20
89
5
60
46
17
0
35
1.49
47213861--47214061
68
3.0
68
84
0
276
25
23
16
34
1.96
47218583--47218670
19
4.8
19
69
16
60
39
0
3
56
1.16
47221762--47222477
351
2.0
351
92
0
1180
25
24
26
22
2.00
47226659--47226695
11
3.4
11
88
0
56
70
0
0
29
0.88
47227776--47227868
27
3.2
29
72
15
70
19
9
18
52
1.72
47227812--47227868
27
2.1
27
87
9
82
19
8
15
56
1.65
47230343--47230396
20
2.6
21
82
11
67
35
0
7
57
1.27
47230382--47230430
3
17.3
3
76
19
52
28
2
0
69
1.00
47230386--47230424
11
3.5
11
92
0
69
28
2
0
69
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47230382--47230423
19
2.2
19
87
8
59
26
2
0
71
0.98
47232562--47232678
23
5.0
23
74
12
103
15
26
24
33
1.95
47235237--47235352
50
2.2
53
87
4
166
25
25
12
37
1.90
47246053--47246108
26
2.2
26
100
0
112
35
26
7
30
1.83
47255973--47256033
3
20.3
3
96
0
113
34
0
31
34
1.58
47256588--47256617
14
2.1
14
93
0
51
40
16
13
30
1.87
47260334--47260401
33
2.1
33
91
0
109
35
16
11
36
1.85
47262538--47262583
19
2.3
20
92
7
85
30
10
10
47
1.73
47263404--47263436
15
2.2
15
94
0
57
39
18
24
18
1.92
47264455--47264500
23
2.0
23
84
12
60
45
10
6
36
1.65
47264462--47264506
23
2.0
23
82
8
56
40
13
8
37
1.76
47269481--47269530
25
2.0
25
88
7
75
58
4
34
4
1.36
47271638--47271663
12
2.2
12
100
0
52
0
7
0
92
0.39
47275288--47275325
19
2.0
19
100
0
76
26
31
5
36
1.79
47279200--47279224
4
6.2
4
100
0
50
76
0
24
0
0.80
47300075--47300100
13
2.0
13
100
0
52
23
23
30
23
1.99
47304454--47304611
43
3.7
43
75
10
128
28
25
18
27
1.98
47304454--47304612
85
1.9
85
81
5
196
28
25
18
27
1.98
47307630--47307681
22
2.4
21
83
3
59
25
23
36
15
1.93
47313823--47313891
34
2.0
34
97
0
129
47
20
10
21
1.79
47326752--47326800
18
2.7
18
90
0
80
34
14
24
26
1.94
47328985--47329029
23
2.0
23
86
8
65
40
0
6
53
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47339045--47339195
55
2.7
55
82
4
189
50
17
7
24
1.70
47347241--47348909
414
4.0
414
99
0
3295
32
20
14
33
1.92
47347241--47348909
827
2.0
828
99
0
3295
32
20
14
33
1.92
47353993--47354021
6
4.8
6
100
0
58
68
0
0
31
0.89
47356508--47356540
17
2.0
17
88
5
50
48
3
0
48
1.17
47356685--47356747
32
2.0
32
90
0
99
46
7
3
42
1.49
47356938--47356987
24
2.1
24
96
0
91
34
14
4
48
1.62
47357630--47357769
71
2.0
71
98
0
271
25
17
5
51
1.67
47358456--47358492
17
2.2
17
90
0
56
54
0
0
45
1.00
47364589--47364694
17
6.2
17
68
12
65
49
12
9
29
1.72
47364714--47365232
17
29.0
17
65
15
120
45
10
12
31
1.76
47364857--47364914
18
3.3
17
83
7
71
46
6
15
31
1.72
47364714--47364927
35
6.2
35
72
10
109
42
11
13
32
1.79
47364997--47365046
21
2.4
21
83
3
57
44
6
12
38
1.66
47365006--47365087
18
4.6
17
74
10
58
47
12
12
28
1.76
47365064--47365159
36
2.6
37
80
9
108
56
10
6
27
1.57
47365118--47365157
20
2.0
20
85
0
53
60
12
2
25
1.45
47365188--47365239
18
2.9
19
80
11
56
46
11
11
30
1.76
47365835--47365897
7
8.4
8
79
15
55
0
17
0
82
0.67
47365845--47365910
22
3.1
20
81
12
78
0
16
0
83
0.65
47365836--47365905
27
2.6
27
83
0
95
0
17
0
82
0.66
47365837--47365903
8
8.5
8
83
12
52
0
17
0
82
0.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47366034--47366063
10
3.0
10
90
0
51
0
10
6
83
0.81
47366168--47366210
10
4.3
10
78
0
50
0
18
0
81
0.69
47366189--47366235
3
15.0
3
95
4
76
0
31
0
68
0.90
47366176--47366235
23
2.7
23
87
10
81
0
28
0
71
0.86
47366184--47366235
20
2.7
20
94
5
90
0
30
0
69
0.89
47366609--47366709
30
3.4
30
86
4
134
45
3
21
28
1.70
47366575--47366709
59
2.3
59
82
6
150
42
3
22
31
1.71
47366591--47366709
30
4.1
29
81
10
120
44
3
21
31
1.68
47366980--47367181
50
3.8
51
88
9
291
35
18
16
30
1.93
47366980--47367196
54
4.1
54
88
8
311
36
17
16
29
1.92
47366980--47367188
104
2.0
104
90
4
332
36
18
16
29
1.92
47367175--47367209
14
2.5
14
90
0
52
60
2
17
20
1.49
47367283--47367311
15
1.9
15
100
0
58
72
6
6
13
1.26
47367283--47367316
13
2.4
14
90
9
52
70
8
8
11
1.34
47367307--47367554
85
2.8
87
80
10
290
35
18
18
26
1.94
47367307--47367561
91
2.9
88
81
9
306
36
18
18
26
1.94
47367519--47368320
192
4.2
192
96
1
1470
34
20
13
30
1.92
47367519--47368320
191
4.2
192
96
1
1461
34
20
13
30
1.92
47380224--47380328
17
6.2
16
70
13
68
49
13
9
27
1.73
47380361--47380425
34
1.9
34
90
0
103
50
10
10
27
1.70
47380362--47380888
18
28.7
18
67
16
176
45
10
12
31
1.76
47380482--47380559
35
2.2
35
81
4
86
47
10
15
26
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47380664--47380709
19
2.5
19
82
10
51
45
6
13
34
1.69
47380858--47380897
17
2.4
16
84
8
53
50
10
10
30
1.69
47381517--47381568
7
7.0
7
89
10
77
0
17
0
82
0.66
47381507--47381572
7
8.4
8
86
10
75
0
19
0
80
0.72
47381507--47381568
15
4.0
15
87
10
81
0
19
0
80
0.71
47381519--47381572
22
2.3
23
93
6
92
0
16
0
83
0.65
47381509--47381581
37
2.0
38
86
5
105
0
19
0
80
0.71
47381855--47381914
3
18.0
3
86
13
66
0
33
0
66
0.92
47381855--47381913
10
5.8
10
81
15
68
0
32
0
67
0.91
47381854--47381914
22
3.0
20
88
9
88
0
32
0
67
0.91
47381862--47381914
25
2.3
23
87
9
72
0
33
0
66
0.92
47382287--47382388
30
3.4
30
87
2
143
45
3
21
29
1.70
47398503--47398531
6
4.8
6
100
0
58
68
0
0
31
0.89
47401162--47401224
32
2.0
32
90
0
99
46
7
3
42
1.49
47401344--47401392
25
1.9
26
83
4
64
16
12
12
59
1.62
47401420--47401467
22
2.1
24
88
7
73
31
14
4
50
1.62
47401745--47401784
20
2.0
20
85
0
53
47
0
0
52
1.00
47402124--47402257
69
2.0
67
92
5
225
26
17
5
50
1.68
47402937--47402976
15
2.7
16
85
14
59
55
0
0
45
0.99
47408968--47409651
17
37.9
17
64
17
89
45
10
11
31
1.75
47409106--47409198
34
2.7
35
83
3
118
46
12
11
29
1.78
47409227--47409297
35
2.0
35
83
5
90
45
11
15
28
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47409227--47409285
18
3.5
17
75
11
50
45
10
16
27
1.80
47409258--47409288
16
1.9
16
93
0
53
45
9
9
35
1.70
47409370--47409410
19
2.2
19
86
8
57
41
9
14
34
1.79
47409376--47409425
21
2.4
21
83
3
57
44
6
12
38
1.66
47409385--47409466
18
4.6
17
74
10
58
47
12
12
28
1.76
47409443--47409520
36
2.2
36
83
4
95
56
7
7
28
1.55
47409497--47409538
22
1.9
22
85
0
57
61
11
2
23
1.42
47409518--47409606
17
5.2
17
78
8
99
50
13
11
24
1.74
47409518--47409602
35
2.5
34
80
5
100
49
14
10
25
1.75
47410188--47410259
8
9.4
8
86
6
87
0
19
0
80
0.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318