genome.fa.s5.2.7.7.80.10.50.1000.286.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  286  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91293648--91293718	26	2.8	24	73	10	61	33	2	0	63	1.09
91293658--91293738	28	3.1	26	74	11	67	30	2	1	65	1.13
91293752--91293808	18	3.2	17	79	18	62	14	3	3	78	1.01
91311729--91311795	21	3.2	20	80	15	75	61	0	7	31	1.24
91311810--91311858	22	2.3	21	83	13	64	46	8	8	36	1.63
91312439--91312505	26	2.5	26	83	9	82	65	1	10	22	1.31
91312512--91312536	6	4.2	6	100	0	50	52	0	16	32	1.44
91313741--91313820	23	3.5	22	86	10	99	18	0	35	46	1.50
91316398--91316485	46	1.9	46	100	0	176	25	4	10	60	1.48
91321365--91321422	25	2.3	25	82	5	64	63	3	0	32	1.11
91321367--91321430	28	2.3	28	83	5	76	59	3	0	37	1.13
91324400--91324440	3	14.0	3	85	14	59	31	2	0	65	1.05
91324629--91324663	12	2.8	12	91	4	52	80	0	20	0	0.72
91324625--91324663	17	2.4	16	83	8	51	79	0	20	0	0.73
91329343--91329368	13	2.0	13	100	0	52	23	15	15	46	1.83
91329937--91330126	98	1.9	98	82	4	240	29	15	27	27	1.96
91329986--91330132	49	3.0	49	75	4	143	26	15	29	28	1.96
91330370--91330461	48	1.9	48	88	0	139	31	5	21	41	1.76
91339915--91339955	10	4.3	10	75	12	50	51	7	0	41	1.30
91339915--91339955	14	2.9	14	79	13	57	51	7	0	41	1.30
91339946--91339990	21	2.1	21	84	8	56	42	11	4	42	1.60
91344202--91344256	26	2.2	24	80	6	56	54	16	1	27	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91345337--91345412	22	3.7	21	75	15	59	39	18	6	35	1.77
91345373--91345463	19	4.9	19	89	8	152	37	14	10	37	1.81
91345366--91345460	35	2.6	37	85	12	135	36	14	10	37	1.81
91345582--91345621	21	2.0	20	85	5	53	10	2	15	72	1.21
91345814--91346087	45	6.1	45	77	6	259	27	26	14	31	1.95
91345828--91345996	89	1.9	89	86	0	239	27	28	13	30	1.94
91346030--91346555	78	6.7	78	91	0	802	25	23	18	32	1.97
91346780--91346857	40	2.0	40	89	0	120	32	26	12	28	1.93
91346497--91347056	224	2.5	219	86	4	734	26	21	18	33	1.96
91355559--91355603	22	2.0	22	86	4	63	37	17	6	37	1.76
91355582--91355654	19	3.9	19	91	7	123	35	16	9	38	1.81
91355574--91355654	36	2.2	37	87	10	123	34	17	8	39	1.80
91355585--91355662	36	2.2	36	86	9	106	37	14	11	37	1.82
91355773--91355812	21	2.0	20	85	5	53	10	2	15	72	1.21
91365177--91365214	5	7.4	5	88	5	58	81	0	2	15	0.80
91366089--91366196	26	4.2	26	90	0	171	34	5	24	36	1.79
91379049--91379131	29	2.8	30	74	7	89	31	22	16	28	1.96
91380714--91380786	36	2.0	36	97	0	137	34	30	10	24	1.90
91383052--91383159	26	4.2	26	91	0	180	33	7	23	36	1.83
91388457--91388498	20	2.1	20	100	0	84	23	33	9	33	1.87
91394576--91394635	28	2.1	28	96	0	111	16	25	23	35	1.95
91404018--91404047	15	2.0	15	100	0	60	53	13	6	26	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91435211--91435275	30	2.1	32	85	5	89	44	1	0	53	1.09
91435210--91435281	31	2.4	28	80	15	81	44	1	0	54	1.08
91435279--91435315	18	2.2	18	85	9	51	40	2	0	56	1.13
91435805--91435852	17	2.7	17	78	18	53	66	2	2	29	1.14
91446461--91446491	15	2.1	15	100	0	62	35	12	25	25	1.92
91459088--91459130	22	2.0	23	86	9	63	25	9	20	44	1.81
91459925--91459958	17	1.9	18	88	5	52	38	2	14	44	1.61
91467148--91467357	90	2.3	88	84	9	264	37	18	10	34	1.85
91467502--91467574	20	3.9	19	74	15	55	64	1	0	34	1.02
91467533--91467582	17	2.9	16	80	13	55	68	2	0	30	1.01
91467549--91467573	8	3.1	8	100	0	50	64	0	0	36	0.94
91467533--91467612	9	8.8	9	77	10	65	62	2	2	32	1.22
91467533--91467613	10	8.8	10	74	9	50	62	2	2	32	1.21
91467804--91467968	10	17.2	10	67	14	55	32	6	1	60	1.29
91467847--91467944	29	3.4	27	75	18	83	30	6	2	61	1.32
91467804--91467953	19	8.0	19	68	12	69	32	6	1	60	1.31
91467941--91467967	11	2.5	11	100	0	54	33	0	0	66	0.92
91470116--91470159	23	1.9	23	86	9	63	63	6	9	20	1.46
91471794--91472274	133	3.6	133	91	2	734	26	22	20	30	1.98
91479844--91479887	21	2.1	21	87	8	63	18	22	20	38	1.93
91483225--91483552	164	2.0	164	99	0	647	33	16	21	29	1.95
91485257--91485297	19	2.2	19	95	0	73	12	9	2	75	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91502338--91502384	22	2.1	22	92	0	76	12	51	21	14	1.76
91504792--91504817	10	2.6	10	100	0	52	92	0	7	0	0.39
91505423--91505477	16	3.4	16	76	16	51	29	0	3	67	1.08
91506357--91506396	19	2.1	19	100	0	80	15	10	0	75	1.05
91512845--91512939	48	2.0	48	100	0	190	27	27	13	31	1.94
91513870--91513896	11	2.5	11	100	0	54	7	37	0	55	1.28
91516347--91516467	59	2.1	59	85	0	161	32	25	19	22	1.98
91516270--91516566	163	1.8	163	88	1	461	29	21	20	27	1.98
91516417--91516900	104	4.7	104	90	1	693	29	21	19	28	1.98
91519723--91520260	212	2.6	206	91	4	895	40	6	12	41	1.68
91520353--91520393	16	2.5	17	76	7	50	65	0	0	34	0.93
91523893--91523971	22	3.5	23	73	22	60	43	0	1	55	1.07
91524041--91524089	19	2.3	22	80	20	68	42	0	0	57	0.99
91524068--91524133	13	4.8	13	75	18	53	39	0	4	56	1.20
91524248--91524295	13	3.3	13	75	25	51	56	0	2	41	1.11
91524251--91524293	15	2.7	16	80	19	54	58	0	2	39	1.11
91524255--91524293	17	2.2	18	90	4	62	53	0	2	43	1.14
91524492--91524536	17	2.7	16	80	10	54	40	0	4	55	1.20
91530883--91530968	21	3.9	23	80	10	90	37	25	22	15	1.93
91532404--91532439	15	2.3	17	81	18	51	0	30	0	69	0.89
91538742--91538815	20	3.5	22	80	10	82	39	27	21	12	1.89
91538742--91538827	23	4.0	23	77	13	83	38	25	22	13	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91540263--91540298	15	2.3	17	81	18	51	0	30	0	69	0.89
91541190--91541263	22	3.4	22	83	9	89	54	0	0	45	1.00
91541310--91541407	19	5.2	19	74	19	89	58	0	0	41	0.98
91541295--91541399	19	6.3	15	72	20	52	57	0	0	42	0.99
91541294--91541422	37	3.5	38	75	17	121	58	0	0	41	0.98
91541371--91541422	22	2.3	23	83	16	72	61	0	0	38	0.96
91541504--91541547	24	1.9	23	90	9	72	72	4	2	20	1.13
91553556--91553673	56	2.1	57	95	3	220	38	5	15	40	1.69
91558668--91559004	172	2.0	172	96	0	629	34	14	18	32	1.92
91565395--91565486	35	2.6	35	84	0	130	30	9	26	33	1.88
91566691--91566739	24	2.0	24	92	0	80	38	10	30	20	1.86
91570970--91571018	23	2.1	23	96	0	89	53	4	14	28	1.59
91579871--91579930	25	2.3	27	82	8	79	31	13	11	43	1.80
91579871--91579930	26	2.3	26	85	5	77	31	13	11	43	1.80
91592877--91592906	15	1.9	16	93	6	53	46	0	0	53	1.00
91597516--91597633	40	2.9	41	83	2	157	33	27	14	24	1.94
91608917--91608974	9	6.7	9	80	20	70	44	0	32	22	1.53
91612913--91612938	13	2.0	13	100	0	52	30	0	15	53	1.42
91614008--91614059	24	2.2	24	92	0	86	50	5	5	38	1.51
91614139--91614223	29	2.9	29	89	0	125	35	34	9	21	1.85
91616649--91616704	30	1.9	28	85	7	76	51	3	14	30	1.59
91616709--91616757	23	2.1	23	82	14	57	44	4	16	34	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91618466--91618555	47	1.9	47	97	0	171	42	14	13	30	1.84
91619415--91619448	6	5.3	6	93	6	50	70	0	0	29	0.87
91619415--91619452	7	5.7	7	96	3	62	68	0	0	31	0.90
91621015--91621099	31	2.8	29	74	8	80	41	10	10	37	1.74
91623322--91623386	32	2.0	32	100	0	130	30	6	24	38	1.80
91627092--91627431	131	2.6	132	88	3	496	37	19	16	26	1.93
91631350--91631405	27	2.1	27	100	0	112	42	14	10	32	1.80
91632204--91632262	27	2.3	25	85	11	75	8	11	3	76	1.13
91638523--91638561	21	1.9	20	84	5	51	33	7	23	35	1.83
91640108--91640146	18	2.2	18	86	4	53	15	15	43	25	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318