Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: A05 Parameters: 2 7 7 80 10 50 1000 Length: 100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  296  of  318  ( 38109 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94202041--94202107
27
2.5
28
85
4
84
55
2
2
38
1.31
94202070--94202108
13
2.9
13
85
7
51
56
2
5
35
1.35
94207148--94207224
26
3.0
25
75
9
75
55
1
6
36
1.34
94223350--94223419
27
2.5
28
73
15
72
47
17
2
32
1.62
94223495--94223527
9
3.7
9
91
0
57
48
21
9
21
1.77
94227887--94227917
6
5.2
6
100
0
62
19
16
0
64
1.29
94227887--94227934
12
3.8
12
84
10
51
18
10
2
68
1.28
94241550--94241578
13
2.1
14
93
6
51
13
0
6
79
0.93
94244667--94244730
32
2.0
32
100
0
128
43
28
3
25
1.69
94244667--94244721
18
3.3
18
70
19
64
45
29
3
21
1.69
94252038--94252071
17
2.0
17
88
0
50
20
29
11
38
1.88
94256361--94256410
23
2.2
23
82
7
57
42
12
0
46
1.41
94260863--94260907
20
2.3
19
81
7
54
44
2
0
53
1.13
94271934--94271962
14
2.0
15
93
6
51
37
6
20
34
1.80
94272560--94272681
60
2.0
60
98
0
235
48
15
9
26
1.76
94273869--94273927
19
2.8
20
76
16
57
35
6
15
42
1.73
94273880--94273922
23
1.9
23
85
4
61
37
4
16
41
1.69
94278992--94279042
19
2.9
17
83
11
66
37
9
17
35
1.83
94280081--94280144
21
3.2
21
62
20
55
32
15
17
34
1.91
94280079--94280157
39
2.0
39
100
0
158
36
12
17
32
1.88
94280093--94280156
21
3.2
21
62
20
55
34
12
20
32
1.90
94284875--94285305
214
2.0
217
86
4
604
42
15
16
25
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94288008--94288066
18
3.3
18
76
9
66
49
10
6
33
1.63
94289379--94289414
18
2.0
18
88
0
54
47
2
2
47
1.31
94293055--94293139
42
2.0
42
97
0
161
23
12
14
49
1.77
94306487--94306537
23
2.2
23
92
0
84
31
31
13
23
1.93
94316705--94316736
15
2.1
15
94
0
55
75
3
3
18
1.08
94316972--94317004
3
11.0
3
93
0
57
63
0
3
33
1.10
94316956--94317001
12
3.8
12
82
0
56
58
0
10
30
1.32
94318291--94318381
1
91.0
1
97
0
173
1
0
0
98
0.09
94328653--94328693
22
1.9
22
85
5
57
24
7
4
63
1.40
94328773--94328798
8
3.2
8
100
0
52
46
0
0
53
1.00
94346879--94346911
3
11.0
3
93
0
57
63
0
3
33
1.10
94346863--94346908
12
3.8
12
82
0
56
58
0
10
30
1.32
94352365--94352821
131
3.5
129
76
7
402
27
18
18
35
1.95
94375118--94375174
28
2.0
29
83
10
73
15
12
19
52
1.74
94378884--94378925
21
2.0
21
100
0
84
28
19
14
38
1.90
94380397--94380426
15
2.0
15
100
0
60
33
26
20
20
1.97
94389762--94389833
22
3.2
22
75
7
72
25
18
29
27
1.98
94389862--94389956
28
3.4
28
76
2
84
29
16
27
26
1.97
94389915--94389989
28
2.6
29
81
8
91
33
16
24
26
1.95
94403724--94403767
22
2.0
22
82
8
54
68
27
2
2
1.14
94404949--94404985
16
2.2
17
90
9
58
10
13
8
67
1.41
94404943--94404988
18
2.5
19
80
20
62
13
13
6
67
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94406552--94406752
87
2.3
87
95
0
357
25
14
22
37
1.92
94410570--94410597
3
9.3
3
100
0
56
32
35
32
0
1.58
94416471--94416524
28
1.9
28
82
14
67
46
3
3
46
1.38
94419046--94419090
18
2.5
19
78
10
58
42
15
4
37
1.67
94419070--94419126
26
2.2
27
87
9
91
31
14
15
38
1.87
94419077--94419127
26
2.0
26
96
0
93
33
15
15
35
1.90
94419082--94419142
26
2.3
26
88
0
86
34
18
14
32
1.91
94419137--94419174
18
2.1
18
90
0
58
47
15
5
31
1.68
94419399--94419423
12
2.1
12
100
0
50
40
20
24
16
1.91
94420507--94420545
5
7.8
5
100
0
78
58
0
0
41
0.98
94421329--94421396
36
1.9
35
85
8
93
60
11
5
22
1.52
94423902--94423956
27
2.1
26
83
6
67
65
10
5
18
1.42
94426245--94426269
13
1.9
13
100
0
50
12
32
48
8
1.69
94427015--94427114
22
4.3
22
77
14
94
36
0
4
60
1.16
94427029--94427117
25
3.7
24
79
14
112
34
0
4
60
1.17
94427015--94427178
11
15.2
11
67
23
73
35
1
4
57
1.31
94427226--94427321
25
3.8
24
79
12
86
35
6
5
53
1.49
94427022--94427466
204
2.2
194
82
9
531
34
3
5
55
1.42
94427219--94427379
88
1.8
87
84
9
220
35
4
5
54
1.46
94427098--94427321
23
9.4
23
68
22
92
35
4
6
53
1.48
94427075--94427788
24
31.5
22
65
25
118
33
4
6
55
1.44
94427735--94427842
57
1.9
54
80
10
119
29
6
4
59
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94430120--94430208
21
4.2
20
76
12
72
57
4
4
33
1.39
94430707--94430765
22
2.6
23
81
10
68
61
3
3
32
1.29
94430871--94430942
2
38.0
2
74
10
53
54
5
1
38
1.33
94430877--94430926
15
3.5
13
79
15
55
56
2
2
40
1.22
94430898--94430939
11
4.0
11
78
12
52
57
7
0
35
1.26
94431031--94431075
21
2.1
21
84
8
56
62
6
2
28
1.33
94443230--94443337
26
4.2
26
92
0
180
35
23
8
33
1.85
94451232--94451291
29
2.1
29
81
6
68
26
15
1
56
1.48
94452474--94452507
17
2.0
17
88
0
50
47
2
0
50
1.16
94453980--94454010
7
4.4
7
100
0
62
29
0
0
70
0.87
94459765--94459847
28
2.8
30
77
17
93
55
2
8
33
1.43
94472738--94472889
40
4.0
40
78
14
187
32
2
13
51
1.55
94472794--94472864
31
2.2
32
92
2
117
32
2
14
50
1.57
94479175--94479205
3
10.3
3
100
0
62
0
35
0
64
0.94
94479880--94479947
29
2.3
30
80
14
88
41
1
2
54
1.24
94481769--94481956
48
3.9
48
85
1
243
19
19
27
33
1.96
94486479--94486558
28
2.9
28
75
14
101
40
18
15
26
1.90
94487076--94487116
18
2.3
18
100
0
82
48
17
12
21
1.79
94503291--94503380
47
1.9
47
81
4
110
34
7
21
36
1.82
94504035--94504142
53
2.0
53
98
0
207
59
0
7
32
1.31
94506055--94506131
38
2.0
38
94
0
136
40
16
11
31
1.85
94507668--94507710
22
2.0
22
85
0
59
58
11
11
18
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94507675--94507715
11
3.7
11
80
0
55
56
9
14
19
1.66
94508895--94508938
22
1.9
24
86
9
65
38
15
2
43
1.60
94513382--94513422
15
2.8
14
89
10
64
34
7
0
58
1.26
94514235--94514337
51
2.0
52
92
5
172
32
13
18
35
1.90
94516241--94516287
22
2.1
22
96
0
85
44
8
10
36
1.70
94538929--94538970
20
2.1
20
100
0
84
23
0
30
45
1.53
94538972--94538997
7
3.7
7
100
0
52
15
0
30
53
1.42
94542093--94542129
15
2.3
17
86
9
51
24
2
5
67
1.25
94549382--94549416
16
2.1
18
89
10
56
31
2
2
62
1.24
94565544--94565605
25
2.4
25
72
2
61
41
3
17
37
1.66
94570010--94570110
50
2.0
50
96
0
184
29
15
14
39
1.88
94570524--94570572
19
2.6
19
78
9
55
6
14
0
79
0.91
94586705--94586779
15
5.2
15
80
9
75
30
0
41
28
1.56
94586705--94586779
6
12.5
6
78
5
62
30
0
41
28
1.56
94586705--94586779
9
8.3
9
76
5
62
30
0
41
28
1.56
94586713--94586779
15
4.2
16
82
14
77
28
0
43
28
1.55
94607206--94607325
39
3.1
39
90
0
177
26
28
17
27
1.98
94608605--94608645
21
2.0
21
90
9
66
34
24
2
39
1.69
94609984--94610035
25
2.1
25
88
0
77
61
13
15
9
1.56
94609970--94610035
25
2.6
26
76
7
73
62
12
18
7
1.52
94611064--94611097
14
2.4
14
90
0
50
44
2
2
50
1.32
94622981--94623006
4
6.5
4
100
0
52
76
0
0
23
0.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94623165--94623210
22
2.0
22
83
4
56
13
2
30
54
1.50
94623545--94623626
3
27.3
3
72
18
57
29
3
1
65
1.17
94623548--94623626
24
3.4
24
70
21
69
29
3
1
65
1.17
94623546--94623607
27
2.3
27
76
17
67
27
4
1
66
1.21
94623545--94623626
11
7.4
11
72
15
62
29
3
1
65
1.17
94623832--94623888
17
3.1
19
78
14
66
31
0
7
61
1.23
94623973--94624002
12
2.5
12
94
0
51
46
6
0
46
1.29
94636149--94636726
44
13.1
44
74
5
434
26
17
25
29
1.97
94636144--94636724
132
4.4
132
93
0
946
27
17
25
29
1.97
94636669--94636871
46
4.5
46
64
10
114
26
21
23
29
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318