genome.fa.s5.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  196  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61715828--61715873	22	2.0	23	87	4	67	52	23	2	21	1.58
61715915--61716028	41	2.8	41	82	4	124	21	26	12	39	1.89
61715982--61716219	111	2.1	111	91	1	379	21	23	16	39	1.92
61716225--61716252	12	2.3	12	100	0	56	53	32	7	7	1.55
61716744--61716822	38	2.1	37	83	6	97	31	17	24	26	1.97
61717363--61717407	21	2.1	22	83	4	56	33	2	22	42	1.66
61717414--61717463	21	2.3	21	80	12	57	18	0	44	38	1.50
61718269--61718618	157	2.2	156	80	5	402	35	12	22	29	1.91
61720229--61720286	8	7.4	8	74	14	50	34	1	31	32	1.68
61720945--61721129	99	1.9	97	86	6	266	44	7	5	42	1.56
61721150--61721174	5	5.0	5	100	0	50	20	0	0	80	0.72
61721092--61721566	96	5.0	96	91	5	770	35	6	4	53	1.47
61721246--61721270	5	5.0	5	100	0	50	20	0	0	80	0.72
61721093--61721566	190	2.5	186	92	4	781	35	6	4	53	1.48
61721340--61721364	5	5.0	5	100	0	50	20	0	0	80	0.72
61721528--61721552	5	5.0	5	100	0	50	20	0	0	80	0.72
61721746--61721852	9	11.7	9	75	9	83	44	14	1	39	1.55
61721752--61721852	18	5.5	18	75	13	98	45	13	1	38	1.55
61726933--61726961	14	2.1	14	93	6	51	34	0	6	58	1.25
61727371--61727415	21	2.1	21	84	8	56	31	20	44	4	1.71
61728441--61728487	21	2.1	23	84	7	62	55	0	0	44	0.99
61728737--61728865	68	1.9	67	98	1	249	47	6	6	39	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61733668--61733757	45	2.0	45	97	0	171	23	17	30	28	1.97
61741725--61741773	26	2.0	26	88	8	75	30	2	6	61	1.32
61744758--61744798	21	2.0	21	85	4	57	70	7	2	19	1.22
61747386--61747705	48	6.7	47	87	3	410	35	27	17	20	1.95
61757071--61757102	14	2.4	13	90	10	55	62	12	6	18	1.50
61758323--61758348	7	3.7	7	100	0	52	11	0	0	88	0.52
61759217--61759254	17	2.2	17	95	0	67	60	10	7	21	1.54
61767604--61767660	27	2.1	27	96	0	105	54	17	3	24	1.59
61780797--61780868	32	2.2	32	85	0	99	19	26	30	23	1.98
61784930--61785617	352	2.0	349	90	2	1076	43	12	9	35	1.74
61788920--61788949	8	3.8	8	95	0	51	40	3	0	56	1.16
61791374--61791574	108	1.8	110	87	4	300	22	22	17	36	1.95
61799051--61799258	55	3.8	53	78	8	188	22	26	16	34	1.95
61799051--61799251	108	1.8	110	85	4	282	22	26	17	33	1.96
61800997--61801158	45	3.6	45	89	4	254	29	27	20	22	1.99
61802207--61802232	11	2.4	11	100	0	52	30	30	7	30	1.85
61810252--61810294	15	2.7	16	85	10	61	65	6	0	27	1.18
61812115--61813104	332	3.0	333	97	0	1874	37	18	15	28	1.92
61817339--61817438	49	2.0	49	96	0	182	34	19	14	33	1.91
61819880--61819913	16	2.1	17	88	5	52	76	11	0	11	1.02
61821397--61821461	28	2.3	28	84	7	78	35	16	27	20	1.94
61825114--61825175	26	2.4	27	81	5	65	40	9	29	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61840089--61840139	24	2.1	24	85	0	66	37	15	25	21	1.93
61845275--61845316	15	2.8	15	78	7	50	47	4	9	38	1.57
61845916--61845947	10	3.2	10	90	0	55	18	0	28	53	1.45
61848467--61848504	4	9.5	4	86	11	51	5	18	0	76	0.97
61848467--61848511	16	2.8	16	86	6	56	8	15	0	75	1.03
61848503--61848548	8	5.8	8	84	7	58	36	2	0	60	1.09
61854121--61854162	17	2.5	17	96	0	75	26	19	19	35	1.95
61855593--61855632	19	2.1	20	86	9	57	25	7	15	52	1.68
61856652--61856681	15	2.0	15	93	0	51	36	6	0	56	1.26
61857014--61857064	25	2.0	25	100	0	102	68	3	0	27	1.07
61857241--61857302	29	2.1	30	93	3	108	38	0	1	59	1.07
61857278--61857341	22	3.0	21	77	8	58	37	6	0	56	1.25
61857385--61857431	9	5.1	9	78	14	51	29	0	2	68	1.02
61857383--61857423	17	2.3	18	84	12	50	29	0	2	68	1.03
61857399--61857436	17	2.2	18	86	13	53	36	0	0	63	0.95
61858516--61858559	21	2.0	23	86	8	65	45	0	0	54	0.99
61861156--61861200	17	2.6	16	86	10	54	62	0	4	33	1.15
61862519--61862677	27	5.9	27	77	12	148	35	22	23	18	1.96
61862537--61862677	54	2.6	53	87	5	201	35	23	23	17	1.95
61870520--61870679	27	5.9	27	76	12	141	36	21	22	19	1.95
61870538--61870678	54	2.6	54	89	3	212	36	22	21	18	1.95
61872680--61872848	41	4.1	41	76	8	139	25	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61872702--61872849	41	3.6	41	78	7	167	26	27	22	23	1.99
61876441--61876500	17	3.4	17	76	23	61	51	6	1	40	1.38
61877342--61877371	15	1.9	16	93	6	53	43	0	0	56	0.99
61880188--61880290	53	1.9	53	96	0	188	31	9	10	48	1.70
61887022--61887197	48	3.8	47	78	13	177	27	19	30	22	1.98
61887019--61887338	48	6.7	47	72	13	172	27	18	29	24	1.98
61894373--61894600	48	4.8	48	83	9	181	28	17	30	22	1.97
61894421--61894599	95	1.9	96	82	10	233	27	17	32	22	1.97
61894644--61894807	47	3.5	47	98	0	312	26	18	32	21	1.97
61896503--61896674	46	3.7	46	77	13	199	29	28	20	21	1.98
61896508--61896678	93	1.8	93	93	0	297	29	29	20	21	1.98
61897098--61897157	30	2.0	30	86	0	84	31	25	6	36	1.82
61908159--61908200	17	2.5	17	96	0	75	45	0	11	42	1.41
61913962--61913996	17	2.0	18	88	5	54	34	28	0	37	1.58
61914708--61914765	25	2.3	26	82	5	75	67	3	0	29	1.07
61914720--61914768	26	2.0	24	88	8	71	63	4	0	32	1.13
61914755--61914797	21	2.0	22	86	4	61	69	6	2	20	1.23
61918753--61918801	19	2.5	20	77	12	57	51	2	14	32	1.54
61954505--61954724	40	5.5	40	81	7	259	26	26	22	24	2.00
61954505--61954724	82	2.7	80	84	6	259	26	26	22	24	2.00
61958599--61958913	48	6.6	48	87	2	420	25	16	31	26	1.97
61960907--61960973	24	2.6	25	81	6	73	19	1	28	50	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61962603--61962662	29	2.1	29	81	9	70	46	1	23	28	1.62
61974766--61974904	38	3.4	38	73	16	134	30	25	15	28	1.96
61982926--61982988	31	2.0	31	100	0	126	34	6	6	52	1.52
61993010--61993088	37	2.1	37	90	0	122	25	31	18	24	1.98
61997091--61997400	40	7.8	40	89	0	476	26	26	21	25	1.99
61998613--61998691	37	2.1	37	90	0	122	25	31	18	24	1.98
61998812--61998927	47	2.5	47	87	2	162	28	31	7	32	1.85
62002339--62002363	13	1.9	13	100	0	50	32	28	40	0	1.57
62011768--62012071	47	6.4	47	90	1	419	27	29	8	34	1.87
62016329--62016467	69	2.0	69	98	0	269	27	12	18	41	1.86
62029748--62029847	49	2.0	49	98	0	191	30	6	25	39	1.79
62031060--62031097	18	2.1	18	90	9	60	23	15	0	60	1.35
62031145--62031195	18	2.8	18	85	5	68	66	1	1	29	1.13
62031147--62031180	6	5.7	6	100	0	68	67	0	0	32	0.91
62039512--62039642	27	4.9	27	92	0	190	27	22	9	40	1.85
62039620--62039950	27	12.2	27	76	8	206	40	21	8	29	1.82
62039620--62039977	54	6.6	54	74	6	249	40	20	8	29	1.83
62039620--62039892	81	3.4	81	82	5	295	41	21	8	28	1.82
62040001--62040096	27	3.6	27	84	5	106	33	20	22	22	1.97
62040904--62041050	26	5.8	26	81	4	176	27	21	20	29	1.98
62040904--62041044	51	2.8	52	88	6	193	28	21	20	29	1.98
62041195--62041286	42	2.2	42	92	0	148	29	14	21	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62043620--62043679	27	2.2	27	84	0	75	31	21	11	35	1.90
62043620--62043724	54	1.9	54	82	0	129	27	21	11	39	1.88
62043631--62043734	27	3.9	27	88	0	145	26	22	10	40	1.86
62043712--62043958	27	9.2	27	80	4	230	41	20	9	28	1.83
62043712--62043984	81	3.4	80	80	5	264	41	20	9	28	1.84
62043778--62043986	54	3.9	54	79	10	166	40	19	10	29	1.84
62043997--62044048	27	1.9	27	88	7	79	38	13	13	34	1.84
62044093--62044193	27	3.7	27	85	5	116	33	22	22	20	1.97
62044996--62045142	26	5.8	26	83	4	194	27	22	21	29	1.99
62044996--62045139	51	2.8	51	89	6	206	27	22	20	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318