Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  181  of  318  ( 38109 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56727111--56727288
51
3.5
51
89
4
254
29
13
29
27
1.94
56729092--56729151
21
2.5
25
79
15
65
16
20
21
41
1.90
56734724--56734849
63
2.0
63
98
0
243
36
11
7
43
1.71
56738825--56738859
17
2.1
17
88
0
52
17
25
37
20
1.94
56739074--56739257
27
6.9
27
80
1
181
42
17
5
34
1.73
56739076--56739261
54
3.5
54
82
8
209
41
18
5
34
1.73
56739244--56739365
27
4.6
25
84
9
113
33
18
22
26
1.96
56739265--56739374
26
4.2
26
89
5
150
31
16
26
25
1.96
56739265--56739374
53
2.1
53
87
3
159
31
16
26
25
1.96
56743473--56743712
27
8.9
26
73
13
134
39
17
9
33
1.82
56743476--56743709
81
2.9
79
81
5
245
40
17
8
32
1.81
56743473--56743673
54
3.7
53
82
4
215
39
17
9
33
1.82
56743473--56743709
54
4.4
54
79
7
205
39
17
9
33
1.82
56743696--56743787
27
3.4
27
89
0
130
31
13
23
31
1.93
56743766--56743808
21
2.0
21
86
0
59
37
2
30
30
1.70
56743789--56743849
27
2.3
27
88
0
86
34
16
24
24
1.95
56745281--56745325
18
2.5
18
100
0
90
35
11
17
35
1.86
56745843--56745984
43
3.4
41
84
4
167
30
16
23
28
1.97
56751568--56751704
65
2.1
65
100
0
274
32
4
19
43
1.71
56772082--56772115
14
2.4
14
90
0
50
2
20
2
73
1.09
56773996--56774040
14
3.3
14
84
6
65
48
13
0
37
1.42
56774052--56774121
22
3.3
22
64
28
60
38
15
11
34
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56774023--56774128
42
2.5
42
98
1
203
40
14
12
33
1.83
56776263--56776306
22
1.9
24
81
9
56
27
15
13
43
1.85
56777453--56777505
23
2.4
22
76
20
56
9
18
1
69
1.25
56778804--56778838
9
3.8
9
88
3
52
11
8
8
71
1.31
56795350--56795403
20
2.7
20
82
0
63
24
20
18
37
1.94
56795350--56795423
30
2.5
30
86
8
98
21
20
18
39
1.93
56795350--56795414
20
3.2
20
71
16
53
23
21
16
38
1.93
56800737--56800876
27
5.2
28
88
5
175
35
23
24
17
1.95
56802496--56802597
26
3.9
26
97
0
177
36
25
5
32
1.80
56804385--56804411
10
2.7
10
100
0
54
18
11
29
40
1.85
56805714--56805747
17
1.9
17
88
5
50
41
11
5
41
1.66
56807823--56807870
20
2.4
20
67
0
51
33
18
27
20
1.96
56812831--56812884
13
4.0
13
95
4
90
14
9
1
74
1.15
56816332--56816392
20
3.0
20
82
17
65
31
24
13
31
1.93
56816331--56816388
10
5.7
10
74
11
55
31
27
13
27
1.94
56817552--56817584
16
2.1
16
88
5
50
18
24
3
54
1.57
56817893--56817962
12
5.8
12
76
12
63
72
4
7
15
1.22
56817903--56817961
27
2.2
27
81
6
66
72
3
8
15
1.21
56817941--56818012
28
2.6
27
78
6
81
69
6
13
9
1.36
56817903--56817962
24
2.4
24
86
8
75
71
3
8
16
1.24
56817940--56818012
29
2.6
28
81
8
87
68
8
13
9
1.39
56818874--56818908
18
1.9
18
88
11
54
57
0
20
22
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56820981--56821041
20
3.0
20
82
17
65
31
24
13
31
1.93
56820980--56821037
10
5.7
10
74
11
55
31
27
13
27
1.94
56823180--56823209
10
3.0
10
100
0
60
20
0
10
70
1.16
56826714--56826752
19
2.1
19
95
0
69
48
12
10
28
1.74
56831649--56831685
10
3.7
10
92
7
58
81
0
13
5
0.86
56831757--56831781
12
2.1
12
100
0
50
76
0
16
8
1.02
56831757--56831838
30
2.7
31
81
5
105
64
1
21
12
1.33
56833953--56834049
30
3.2
31
73
5
101
27
28
15
27
1.96
56834906--56834954
20
2.3
20
82
10
53
32
8
14
44
1.74
56836041--56836094
20
2.7
20
82
0
63
24
20
18
37
1.94
56836041--56836114
30
2.5
30
86
8
98
21
20
18
39
1.93
56836041--56836105
20
3.2
20
71
16
53
23
21
16
38
1.93
56837723--56837748
13
2.0
13
100
0
52
76
7
0
15
0.99
56839289--56839335
20
2.3
20
85
0
67
21
12
36
29
1.91
56841004--56841109
48
2.2
48
85
9
137
14
24
1
59
1.45
56843728--56843765
10
3.8
10
80
13
51
26
10
31
31
1.90
56843730--56843776
20
2.3
20
96
0
85
23
12
36
27
1.91
56845445--56845549
47
2.2
47
85
8
133
14
24
1
59
1.46
56848159--56848205
20
2.3
20
85
0
67
21
12
36
29
1.91
56849184--56849340
12
13.6
12
68
17
55
68
2
18
10
1.29
56849206--56849343
6
22.7
6
68
7
73
70
2
18
8
1.26
56849274--56849360
30
3.1
27
79
12
95
68
1
18
11
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56849184--56849360
57
3.2
52
75
13
169
68
2
18
10
1.31
56851197--56851250
20
2.7
20
82
0
63
24
20
18
37
1.94
56851197--56851270
30
2.5
30
86
8
98
21
20
18
39
1.93
56851197--56851261
20
3.2
20
71
16
53
23
21
16
38
1.93
56856088--56856184
30
3.2
29
71
7
88
29
15
25
28
1.96
56858365--56858395
12
2.6
12
100
0
62
25
16
12
45
1.83
56858443--56858504
5
12.0
5
74
19
56
3
19
1
75
1.02
56858443--56858511
16
4.6
14
74
15
57
2
18
2
75
1.06
56858445--56858514
36
1.9
37
86
13
101
2
18
2
75
1.05
56859429--56859472
22
2.0
22
86
8
63
4
11
4
79
1.02
56859444--56859484
9
3.8
11
84
9
50
7
7
4
80
1.02
56859453--56859491
11
3.2
13
86
13
57
12
5
7
74
1.20
56861219--56861315
30
3.2
29
71
7
88
29
15
25
28
1.96
56863197--56863293
30
3.2
30
74
8
90
28
16
26
27
1.97
56863694--56863741
20
2.4
20
75
0
60
20
29
18
31
1.97
56865891--56865937
13
3.8
12
88
8
67
78
2
6
12
1.02
56865890--56865940
14
3.9
13
87
10
77
76
1
5
15
1.07
56869386--56869432
20
2.3
20
85
0
67
29
36
12
21
1.91
56879447--56879503
11
4.6
12
83
14
62
12
7
3
77
1.10
56886402--56886436
11
3.1
11
84
8
52
77
0
8
14
0.99
56886413--56886486
28
2.6
28
74
12
80
67
6
13
12
1.40
56887356--56887390
18
1.9
18
88
11
54
57
0
20
22
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56894078--56894123
14
3.2
14
80
20
51
73
0
17
8
1.07
56894061--56894111
22
2.5
20
79
17
59
70
0
21
7
1.12
56894085--56894123
15
2.7
15
85
14
55
76
0
17
5
0.96
56894085--56894124
14
2.8
14
82
17
55
75
0
20
5
0.99
56895017--56895113
30
3.2
30
75
2
106
28
26
15
28
1.96
56898780--56898942
82
2.0
82
85
2
220
25
25
14
33
1.94
56900483--56900545
12
5.2
12
75
21
60
11
22
0
66
1.22
56900584--56900642
21
2.8
21
82
5
66
8
20
0
71
1.12
56901530--56901599
28
2.5
28
90
2
104
12
11
0
75
1.04
56901644--56901698
12
4.7
11
79
16
58
14
3
3
78
1.03
56901644--56901703
13
5.1
12
77
18
63
18
5
3
73
1.16
56902411--56902573
82
2.0
82
84
4
213
34
14
25
25
1.94
56904031--56904082
12
4.5
12
85
4
63
76
3
3
15
1.07
56904126--56904187
25
2.3
28
83
10
85
72
3
12
11
1.23
56904127--56904187
26
2.3
27
88
8
90
73
3
11
11
1.20
56905076--56905133
21
2.8
21
87
7
75
72
0
20
6
1.07
56905172--56905245
12
6.2
12
73
17
55
62
1
24
12
1.38
56906977--56907010
17
1.9
18
94
5
61
41
5
14
38
1.70
56907000--56907048
19
2.6
19
90
0
80
53
14
10
22
1.71
56909219--56909257
20
1.9
20
84
5
51
10
28
2
58
1.44
56911387--56911483
30
3.2
30
77
2
106
28
15
26
28
1.96
56913717--56913796
30
2.7
29
80
14
85
12
21
1
65
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56913747--56913802
18
3.1
18
76
5
51
7
19
3
69
1.27
56913772--56913796
12
2.1
12
100
0
50
8
16
0
76
1.02
56913865--56913920
5
11.0
5
75
24
55
5
17
1
75
1.09
56913865--56913916
20
2.5
20
81
9
61
5
17
1
75
1.10
56913869--56913919
25
2.1
24
89
10
77
5
17
1
74
1.11
56913876--56913925
26
1.9
26
88
8
75
8
16
2
74
1.15
56920420--56920469
15
3.4
15
86
2
66
10
18
12
60
1.59
56922858--56923033
46
3.8
46
76
8
169
24
19
26
29
1.98
56922855--56923025
93
1.8
93
87
2
254
25
19
26
28
1.99
56925150--56925197
14
3.4
14
85
0
60
18
31
6
43
1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318