Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  304  of  318  ( 38109 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96442772--96443291
132
4.0
131
81
4
521
34
16
20
29
1.94
96448571--96448712
73
2.0
72
90
1
221
30
15
4
48
1.66
96454876--96454940
34
2.0
34
84
6
89
30
26
16
26
1.97
96456789--96456896
26
4.2
26
93
0
189
36
24
7
32
1.83
96458769--96458809
13
3.2
13
86
3
57
70
2
2
24
1.11
96461758--96461881
46
2.7
46
85
6
153
31
15
23
29
1.95
96461853--96462027
50
3.6
50
74
9
173
26
18
21
32
1.97
96461853--96462039
94
2.0
94
87
0
266
27
18
21
32
1.97
96462232--96462387
44
3.5
44
77
1
177
30
19
20
29
1.97
96462279--96462429
45
3.4
45
77
5
128
31
17
19
32
1.95
96462232--96462432
89
2.3
89
85
1
260
31
18
19
30
1.96
96462232--96462433
44
4.5
45
75
4
142
31
18
19
30
1.96
96464066--96464202
26
5.4
26
67
16
99
29
4
5
60
1.38
96464298--96464349
16
3.4
16
74
15
56
32
3
0
63
1.12
96467917--96467981
26
2.6
25
73
22
64
49
3
10
36
1.53
96469020--96469060
20
2.0
20
86
9
57
12
9
60
17
1.57
96469090--96469179
46
2.0
46
95
0
162
5
11
38
44
1.63
96470170--96470209
16
2.6
15
84
7
53
35
7
0
57
1.27
96477086--96477140
25
2.2
25
90
0
92
18
32
5
43
1.73
96489559--96489586
11
2.5
11
100
0
56
35
14
0
50
1.43
96501344--96501721
44
8.5
44
74
9
216
31
14
20
33
1.93
96501344--96501776
89
4.9
88
76
6
340
32
14
19
32
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96501341--96501769
133
3.2
132
86
2
581
32
14
20
32
1.93
96501430--96501765
44
7.6
44
76
5
255
33
15
18
31
1.93
96502011--96502125
44
2.6
44
81
9
137
33
16
23
26
1.96
96501909--96502072
89
1.8
89
82
2
213
30
18
20
30
1.96
96503798--96503825
11
2.5
11
100
0
56
35
14
0
50
1.43
96503823--96503872
21
2.4
22
76
10
59
26
8
0
66
1.19
96507706--96507827
17
7.4
17
65
24
64
34
4
2
59
1.30
96507695--96507807
7
16.4
7
67
14
56
33
3
2
60
1.28
96507906--96507967
23
2.7
22
77
7
61
33
6
0
59
1.23
96507900--96507975
34
2.2
34
82
13
86
34
5
1
59
1.28
96507932--96507987
14
4.1
13
75
24
53
35
1
1
60
1.17
96507939--96507988
14
3.3
15
83
11
66
34
2
2
62
1.18
96510625--96510669
15
3.1
14
81
12
56
15
13
13
57
1.65
96511230--96511274
17
2.6
17
80
16
56
48
8
6
35
1.61
96511731--96511824
19
4.8
20
78
11
88
67
2
4
26
1.21
96511966--96512005
21
1.9
21
89
0
62
55
0
15
30
1.41
96512197--96512262
19
3.4
20
77
10
66
27
9
1
62
1.34
96514959--96514988
3
10.0
3
100
0
60
0
33
0
66
0.92
96516647--96516810
57
2.9
57
78
9
142
41
2
3
53
1.30
96516976--96517031
16
3.5
16
82
4
60
32
26
5
35
1.79
96517375--96517484
55
2.0
55
100
0
220
20
27
16
36
1.93
96520273--96520331
31
1.9
31
82
6
75
50
8
8
32
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96523240--96523268
15
2.0
15
93
6
51
68
0
0
31
0.89
96525990--96526016
5
5.4
5
100
0
54
40
0
0
59
0.98
96533218--96533270
26
2.0
27
85
7
74
24
15
22
37
1.92
96534756--96534860
26
4.2
26
87
7
162
37
23
6
32
1.81
96534756--96534852
49
2.0
50
93
2
169
37
23
7
31
1.82
96554184--96554213
14
2.1
14
93
0
51
50
10
6
33
1.62
96554822--96554880
26
2.2
27
93
3
102
15
37
32
15
1.88
96555390--96555453
28
2.3
28
75
20
71
45
6
3
45
1.44
96555446--96555483
9
4.3
9
80
6
51
71
2
0
26
1.00
96558253--96558297
16
2.8
17
80
9
51
44
0
4
51
1.21
96565289--96565333
17
2.6
17
82
10
56
53
0
0
46
1.00
96565287--96565331
15
2.9
16
84
12
58
48
0
0
51
1.00
96565296--96565358
25
2.4
27
79
7
78
50
0
0
49
1.00
96565450--96565484
18
2.0
18
94
5
63
62
0
5
31
1.18
96565565--96565591
8
3.4
8
100
0
54
0
11
0
88
0.50
96566661--96566700
16
2.5
16
87
0
62
45
12
2
40
1.56
96567797--96567839
18
2.4
18
84
0
50
34
18
11
34
1.87
96568010--96568069
18
3.3
18
75
9
59
30
15
11
43
1.82
96569242--96569279
17
2.1
19
90
9
62
0
23
0
76
0.79
96570018--96570123
43
2.5
43
95
0
185
26
22
22
28
1.99
96570772--96570814
17
2.5
17
80
0
50
13
25
27
32
1.94
96572841--96572902
27
2.3
26
78
8
70
37
0
11
51
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96583378--96583445
20
3.5
20
84
11
88
35
1
5
57
1.32
96603604--96603711
26
4.2
26
93
0
189
36
24
7
32
1.83
96604123--96604147
13
1.9
13
100
0
50
40
0
0
60
0.97
96604073--96604162
38
2.4
38
80
12
98
50
2
2
45
1.26
96604430--96604498
5
13.8
5
100
0
138
40
0
0
59
0.97
96610476--96610545
23
2.9
23
81
10
70
28
22
25
22
1.99
96613490--96613546
23
2.5
23
100
0
114
28
21
12
38
1.89
96617730--96617778
24
2.1
24
88
11
75
34
20
26
18
1.95
96620868--96620946
39
2.0
40
87
2
115
39
15
20
25
1.91
96620982--96621097
41
2.8
40
88
5
162
19
20
31
28
1.97
96621314--96621393
22
3.8
22
70
17
71
27
0
31
41
1.56
96621330--96621368
14
2.7
15
80
11
55
30
0
28
41
1.57
96621383--96621434
22
2.4
22
83
6
61
21
0
44
34
1.52
96621476--96621518
11
3.8
12
78
9
54
30
0
0
69
0.88
96621475--96621528
23
2.3
24
84
6
76
37
0
0
62
0.95
96621725--96621765
21
2.0
21
95
0
73
26
0
43
29
1.55
96621722--96621775
21
2.5
20
82
11
72
24
0
42
33
1.55
96626323--96626568
43
5.8
42
85
5
226
26
17
29
26
1.98
96626323--96626568
85
2.9
86
83
2
298
26
17
29
26
1.98
96626640--96626682
22
2.0
22
95
0
77
41
27
20
9
1.83
96633277--96633317
22
1.9
22
85
14
59
9
12
24
53
1.68
96634363--96634388
12
2.2
12
100
0
52
7
15
30
46
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96634444--96634704
41
6.4
40
91
3
378
33
24
22
19
1.97
96634422--96634704
124
2.3
122
87
4
399
33
24
23
19
1.97
96635221--96635263
7
6.1
7
94
0
59
16
0
48
34
1.46
96635204--96635263
21
2.9
21
75
5
59
16
0
48
35
1.47
96635227--96635271
21
2.1
21
83
0
54
13
0
55
31
1.38
96635471--96635513
15
3.0
15
80
10
54
20
0
32
46
1.51
96635466--96635508
22
2.0
22
81
9
52
23
0
30
46
1.52
96637775--96638046
138
2.0
138
93
1
465
26
9
15
48
1.76
96639135--96639251
43
2.7
43
86
0
162
23
21
30
24
1.99
96640135--96640164
15
2.1
15
93
6
53
33
0
0
66
0.92
96640256--96640307
27
1.9
27
92
0
86
21
28
34
15
1.94
96640466--96640496
3
10.3
3
92
0
53
64
0
35
0
0.94
96640688--96640858
100
1.8
89
83
16
222
33
0
15
51
1.43
96640767--96641217
113
3.9
115
91
4
720
31
0
16
51
1.51
96641266--96641297
15
2.1
16
94
5
57
37
0
6
56
1.25
96643819--96643850
17
2.0
17
88
11
50
37
15
6
40
1.73
96644044--96644074
15
2.0
15
93
6
53
32
0
0
67
0.91
96644790--96645072
131
2.2
132
86
0
388
32
19
16
31
1.94
96647552--96647595
19
2.3
19
100
0
88
59
4
9
27
1.48
96654934--96654958
3
8.3
3
100
0
50
68
0
0
32
0.90
96662799--96662851
7
7.6
7
97
0
79
22
32
0
45
1.53
96665060--96665236
40
4.4
40
95
0
309
28
30
19
21
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96678349--96678387
20
1.9
21
89
5
62
35
23
7
33
1.83
96683913--96683952
21
1.9
21
84
0
53
42
0
5
52
1.23
96683939--96684016
18
4.6
17
75
16
72
50
1
0
48
1.09
96683945--96684028
24
3.6
21
68
26
53
54
1
0
44
1.07
96685099--96685138
21
1.9
21
84
0
53
60
7
2
30
1.38
96689212--96689282
35
1.9
36
83
16
92
49
0
2
47
1.16
96689923--96689956
16
2.2
16
94
5
61
38
0
0
61
0.96
96690852--96690876
2
12.5
2
100
0
50
48
0
0
52
1.00
96691186--96691234
22
2.1
23
85
14
66
46
2
0
51
1.12
96692236--96692314
18
4.4
18
73
6
61
64
1
1
32
1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318