Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  141  of  318  ( 38109 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43838048--43838075
14
2.0
14
100
0
56
42
28
14
14
1.84
43841126--43841162
18
2.1
18
89
0
56
16
29
37
16
1.90
43841910--43841949
17
2.3
17
82
4
53
37
5
10
47
1.59
43848656--43848702
20
2.3
20
85
7
60
25
10
17
46
1.79
43855641--43855677
15
2.5
14
91
8
56
67
2
8
21
1.29
43857492--43857549
30
1.9
30
96
0
107
55
6
12
25
1.61
43860205--43860271
33
2.0
33
85
0
89
25
16
20
37
1.93
43866511--43866563
10
5.3
10
86
6
56
64
0
0
35
0.94
43866511--43866564
21
2.6
19
83
13
63
64
0
0
35
0.94
43866511--43866566
19
2.8
21
82
17
66
64
0
0
35
0.94
43866934--43867008
29
2.6
29
85
12
100
33
2
1
62
1.17
43866956--43867000
19
2.3
21
77
14
60
37
2
0
60
1.09
43866937--43867015
10
8.1
10
74
5
72
32
3
1
62
1.21
43867077--43867119
17
2.4
17
80
7
50
44
0
2
53
1.13
43871685--43871722
18
2.1
19
90
5
60
21
21
5
52
1.66
43878626--43878681
29
2.0
28
83
10
71
46
1
3
48
1.30
43884019--43884062
19
2.4
19
85
7
56
50
0
9
40
1.34
43884638--43884668
16
1.9
16
100
0
62
19
22
45
12
1.84
43886427--43886555
27
4.5
27
70
24
86
28
20
26
24
1.99
43886391--43886529
60
2.3
59
82
8
156
29
20
23
25
1.99
43887442--43887542
49
2.1
49
92
0
166
27
9
32
29
1.89
43889677--43889724
6
7.5
6
88
11
69
79
2
0
18
0.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43889677--43889724
20
2.5
18
90
10
69
79
2
0
18
0.84
43889654--43889711
20
2.6
22
81
15
66
72
3
0
24
1.00
43889654--43889732
26
2.8
27
80
20
90
72
2
0
25
0.98
43889681--43889727
14
3.5
14
88
11
64
78
2
0
19
0.85
43889744--43889819
35
2.1
36
90
2
118
26
6
18
48
1.72
43889744--43889819
9
8.6
9
86
2
100
26
6
18
48
1.72
43891663--43891957
146
2.0
146
100
0
590
29
18
11
40
1.86
43892165--43892224
20
3.3
18
69
17
52
35
1
0
63
1.05
43893355--43893505
61
2.6
61
79
9
163
50
12
9
27
1.72
43898297--43898333
17
2.2
18
90
9
60
56
0
0
43
0.99
43898337--43898362
13
2.0
13
100
0
52
53
0
0
46
1.00
43899073--43899106
12
2.8
12
90
0
50
67
0
0
32
0.91
43899705--43899743
13
3.1
13
85
3
53
69
2
2
25
1.14
43899848--43899882
17
2.1
17
100
0
70
51
5
0
42
1.25
43899870--43899924
20
2.7
21
77
8
60
32
1
0
65
1.03
43901431--43901490
26
2.3
26
80
8
68
21
8
13
56
1.63
43902401--43902450
26
1.9
26
88
8
75
62
8
8
22
1.49
43904583--43904774
63
3.1
62
81
4
208
28
20
27
24
1.99
43904817--43905027
108
2.0
108
87
0
305
21
18
30
28
1.97
43922311--43922376
7
9.4
7
86
6
89
15
27
10
46
1.78
43924879--43924924
22
2.1
22
88
8
67
47
0
21
30
1.51
43926184--43926265
41
2.0
41
97
0
155
35
17
21
25
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43931008--43931036
14
2.0
15
93
6
51
58
0
0
41
0.98
43932358--43932705
76
4.4
80
70
13
219
60
2
7
29
1.38
43932358--43932705
26
13.4
26
72
12
236
60
2
7
29
1.38
43932397--43932559
28
5.9
29
71
10
110
62
4
5
27
1.36
43932358--43932591
56
4.4
53
82
4
224
61
3
6
28
1.36
43932638--43932732
29
3.4
26
76
20
86
63
2
5
29
1.28
43945209--43945528
46
7.0
46
89
0
426
41
14
23
21
1.89
43945809--43945841
17
2.0
17
94
5
59
48
0
15
36
1.45
43955681--43955705
7
3.6
7
100
0
50
12
28
0
60
1.32
43966405--43966437
11
3.1
11
95
4
59
39
0
0
60
0.97
43966438--43966482
18
2.6
18
80
16
58
66
13
0
20
1.24
43966561--43966617
30
1.9
29
85
3
78
56
8
7
28
1.56
43972481--43972509
6
4.8
6
100
0
58
17
17
17
48
1.82
43972472--43972509
18
2.1
18
90
0
58
21
15
15
47
1.82
43972565--43972603
18
2.1
19
85
4
53
43
15
12
28
1.83
43978818--43978871
21
2.6
21
79
5
65
35
7
22
35
1.82
43984012--43984053
23
1.9
21
85
9
57
35
0
16
47
1.47
43984024--43984053
10
2.9
10
95
5
51
36
0
13
50
1.42
43984931--43984956
12
2.2
12
100
0
52
34
0
15
50
1.45
43985446--43985492
20
2.3
20
78
7
51
17
23
14
44
1.85
43990257--43990297
14
3.1
14
82
10
59
65
0
0
34
0.93
43990501--43990535
17
2.1
17
88
0
52
54
5
0
40
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43990904--43991003
35
2.9
35
85
4
132
38
17
24
21
1.93
43992543--43992567
13
1.9
13
100
0
50
24
32
12
32
1.91
43993058--43993097
15
2.7
15
96
0
71
15
15
5
65
1.44
43994411--43994480
19
3.7
20
85
11
94
57
2
1
38
1.23
43994411--43994469
20
3.1
19
90
4
84
55
3
1
38
1.26
43996914--43996960
22
2.1
22
96
0
85
21
12
34
31
1.91
44003286--44003320
3
11.7
3
100
0
70
31
0
0
68
0.90
44006820--44006907
44
2.0
44
86
0
122
32
28
15
22
1.95
44008870--44008931
31
2.0
31
100
0
124
54
22
3
19
1.58
44009571--44009845
49
5.7
48
76
10
213
24
29
18
28
1.98
44009573--44009848
98
2.8
96
84
5
306
24
29
18
27
1.98
44011866--44011907
20
2.0
21
90
4
68
50
0
19
30
1.48
44012588--44012703
33
3.5
33
80
6
110
34
11
21
32
1.89
44019950--44020266
49
6.6
48
73
13
190
25
28
17
28
1.98
44019943--44020272
142
2.3
143
82
4
396
25
29
17
27
1.98
44019943--44020269
98
3.4
94
76
11
290
25
29
18
27
1.98
44021001--44021364
180
2.0
179
93
3
613
29
15
15
39
1.88
44026365--44026485
10
13.4
9
71
17
83
61
2
0
35
1.09
44026365--44026485
32
3.4
34
77
16
102
61
2
0
35
1.09
44026427--44026489
17
3.6
18
76
6
67
63
0
0
36
0.95
44026399--44026490
34
2.6
36
73
15
93
61
3
0
34
1.12
44026925--44026966
10
4.1
10
80
17
50
40
2
2
54
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44026913--44026964
21
2.5
21
80
17
56
38
1
3
55
1.29
44033205--44033252
22
2.2
22
92
0
78
37
29
29
4
1.76
44043622--44043659
3
12.7
3
94
0
67
34
2
0
63
1.09
44045044--44045186
35
4.1
35
79
6
146
40
15
20
23
1.90
44045054--44045186
69
1.9
70
82
1
169
39
15
20
24
1.91
44046504--44046538
7
5.3
7
93
6
56
14
71
0
14
1.15
44046504--44046537
6
5.3
6
89
10
50
14
70
0
14
1.17
44046504--44046538
13
2.6
14
86
13
56
14
71
0
14
1.15
44048671--44048729
22
2.7
22
91
0
91
38
15
20
25
1.91
44048674--44048749
22
3.5
21
82
7
62
36
18
18
26
1.94
44050281--44050528
3
84.0
3
65
13
68
28
7
3
61
1.38
44050437--44050480
17
2.6
17
82
7
54
29
4
4
61
1.36
44050437--44050539
20
4.9
20
68
13
64
30
8
2
58
1.43
44057083--44057109
14
1.9
14
100
0
54
29
11
7
51
1.64
44066670--44066733
33
1.9
33
90
0
101
34
9
23
32
1.87
44073040--44073087
16
3.1
16
80
14
57
45
0
0
54
0.99
44073339--44073381
20
2.1
20
86
4
59
46
2
4
46
1.36
44083512--44083735
40
5.7
40
84
6
278
25
27
22
25
2.00
44084862--44085037
56
3.1
56
97
0
334
22
22
9
45
1.80
44086127--44086188
32
1.9
32
96
0
115
24
29
27
19
1.98
44091712--44091743
16
2.0
16
93
0
55
15
3
37
43
1.63
44103014--44103096
41
2.0
41
97
0
157
37
7
10
44
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44103162--44103211
23
2.2
23
88
0
73
38
6
14
42
1.70
44113984--44114009
5
5.2
5
100
0
52
19
0
0
80
0.71
44114248--44114278
2
15.5
2
100
0
62
48
0
51
0
1.00
44118868--44118904
19
1.9
19
88
0
56
75
2
5
16
1.10
44122701--44122760
20
3.2
20
76
17
58
53
3
3
40
1.34
44132251--44132285
16
2.2
17
90
10
56
80
0
11
8
0.92
44136451--44136489
18
2.2
18
86
9
53
61
0
7
30
1.24
44137271--44137297
7
3.9
7
100
0
54
59
0
14
25
1.36
44138087--44138208
60
2.0
60
98
0
235
35
8
21
35
1.83
44141824--44142000
43
4.1
42
80
7
185
29
29
16
24
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318