genome.fa.s5.2.7.7.80.10.50.1000.306.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  306  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97022919--97022955	3	12.3	3	100	0	74	67	0	32	0	0.91
97031104--97031142	7	5.6	7	85	8	53	10	12	12	64	1.51
97031178--97031228	15	3.5	15	74	15	61	35	5	0	58	1.22
97033330--97033594	111	2.4	111	87	7	373	37	6	8	47	1.59
97034700--97034826	47	2.7	46	84	6	148	29	24	15	29	1.96
97034830--97034858	7	4.1	7	100	0	58	13	27	13	44	1.82
97034857--97035065	31	6.7	31	84	4	251	27	26	18	28	1.98
97034864--97035065	62	3.3	62	87	2	289	27	26	17	28	1.98
97034857--97035065	93	2.2	93	87	1	285	27	26	18	28	1.98
97035043--97035269	50	4.5	50	91	1	357	26	21	16	35	1.94
97036051--97036123	35	2.1	35	100	0	146	32	23	20	23	1.98
97038694--97038750	25	2.2	26	96	3	107	31	21	7	40	1.80
97039489--97039591	52	2.0	52	100	0	206	25	17	11	45	1.82
97041041--97041083	20	2.2	20	86	0	59	46	9	6	37	1.63
97041544--97041615	28	2.6	27	82	10	83	45	38	0	15	1.46
97041540--97041607	7	9.9	7	75	10	52	44	41	0	14	1.45
97047139--97047309	93	1.8	93	88	0	261	29	28	21	21	1.98
97047131--97047311	46	3.9	46	75	9	179	29	28	20	22	1.98
97047863--97047899	20	1.9	18	89	10	56	35	21	0	43	1.53
97051004--97051262	86	3.0	86	95	0	464	28	21	18	31	1.96
97051501--97051535	9	3.9	9	89	10	54	85	2	0	11	0.69
97051788--97051847	32	1.9	32	86	6	88	61	8	11	18	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97054777--97054809	2	16.5	2	100	0	66	48	0	51	0	1.00
97056901--97056980	27	3.0	27	88	5	117	36	21	23	18	1.95
97056918--97057048	70	1.9	70	90	6	212	36	23	22	17	1.95
97056946--97057031	43	2.0	43	97	0	163	40	23	19	16	1.91
97056989--97057048	27	2.2	27	88	5	86	35	25	23	16	1.95
97058668--97058775	26	4.2	26	95	0	189	36	22	7	34	1.82
97061437--97061612	65	2.7	64	89	3	280	42	2	11	42	1.56
97061631--97061898	126	2.1	127	86	3	362	37	16	17	28	1.92
97065559--97065615	30	1.9	30	96	0	105	8	14	47	29	1.74
97067076--97067126	24	2.1	24	85	7	68	72	0	3	23	1.01
97069128--97069190	25	2.4	25	86	5	81	57	0	11	31	1.34
97072466--97072510	23	2.0	23	100	0	90	33	13	13	40	1.83
97072783--97072825	21	2.2	19	88	12	61	25	0	18	55	1.42
97075141--97075212	16	4.5	16	87	0	99	29	25	6	38	1.82
97082769--97083083	159	2.0	159	83	3	393	46	18	10	24	1.80
97085097--97085285	103	1.8	103	80	0	225	30	15	17	35	1.91
97086001--97086546	278	2.0	277	98	0	1065	35	10	18	35	1.85
97087657--97087695	6	6.5	6	96	0	69	30	51	2	15	1.57
97088128--97088180	12	4.4	12	74	9	54	16	13	37	32	1.88
97088200--97088249	6	8.3	6	86	0	64	10	0	72	18	1.12
97088203--97088252	12	4.2	12	86	0	73	8	0	72	20	1.10
97088271--97088315	12	3.8	12	78	0	54	13	11	44	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97088332--97088366	3	11.7	3	93	0	61	2	0	68	28	1.04
97088431--97088488	24	2.4	24	85	0	71	18	3	62	15	1.47
97088488--97088540	18	2.9	18	85	0	79	26	5	37	30	1.79
97093468--97093519	12	4.3	12	80	0	59	7	9	65	17	1.45
97093492--97093531	21	1.9	21	84	0	53	10	15	62	12	1.54
97093528--97093567	18	2.2	18	95	0	71	20	5	50	25	1.68
97093590--97093645	15	3.5	17	74	18	57	14	5	62	17	1.49
97095253--97095321	22	3.2	20	81	18	77	49	1	2	46	1.25
97096938--97097106	3	57.3	3	73	6	114	30	8	0	60	1.30
97096931--97097150	12	17.2	12	66	20	74	29	7	0	63	1.25
97098228--97098262	11	3.2	11	88	11	54	0	54	0	45	0.99
97098742--97098766	3	8.3	3	100	0	50	32	0	0	68	0.90
97098729--97098975	123	2.0	126	84	9	326	31	6	6	56	1.48
97103150--97103193	12	3.9	12	82	11	58	9	4	70	15	1.30
97103271--97103316	18	2.6	18	82	0	65	13	2	65	19	1.37
97103354--97103388	18	1.9	18	100	0	70	22	5	42	28	1.76
97103411--97103472	18	3.4	18	77	4	72	12	8	62	16	1.52
97103403--97103460	12	4.8	12	80	0	53	12	6	65	15	1.45
97103525--97103571	21	2.2	21	85	7	60	19	2	63	14	1.40
97107070--97107130	26	2.3	26	94	0	104	37	6	1	54	1.37
97107356--97107385	8	3.9	8	95	4	53	50	0	0	50	1.00
97110000--97110036	18	2.1	18	89	0	56	24	2	45	27	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97110052--97110091	6	6.7	6	85	0	53	12	0	67	20	1.22
97110052--97110091	18	2.2	18	95	0	71	12	0	67	20	1.22
97110000--97110289	108	2.7	106	87	4	316	22	5	52	20	1.66
97110177--97110214	15	2.5	15	86	0	58	15	5	65	13	1.43
97110192--97110380	93	2.0	93	91	0	306	20	5	53	20	1.65
97110052--97110572	108	4.7	110	82	6	369	20	5	53	20	1.64
97110358--97110409	6	8.7	6	80	0	50	15	1	65	17	1.36
97110363--97110424	15	4.1	15	76	0	52	19	3	62	14	1.44
97110480--97110514	18	1.9	18	88	0	52	11	2	68	17	1.31
97110477--97110524	21	2.3	21	92	0	78	10	4	66	18	1.37
97110489--97110535	21	2.2	21	84	0	58	19	4	63	12	1.44
97110551--97110590	18	2.2	18	95	0	71	27	7	40	25	1.82
97110682--97110712	15	2.1	15	93	0	53	12	3	61	22	1.46
97110709--97110754	18	2.6	18	89	0	65	28	0	58	13	1.35
97110699--97110751	21	2.5	21	84	0	61	24	1	60	13	1.43
97110721--97110760	21	1.9	21	84	0	53	27	0	57	15	1.38
97113161--97113247	29	2.9	29	86	3	102	41	22	13	21	1.89
97121904--97121944	21	2.0	21	85	9	57	36	19	12	31	1.89
97125284--97125350	30	2.2	30	97	0	125	29	0	11	58	1.34
97127742--97127774	10	3.2	10	91	8	57	48	18	0	33	1.48
97127743--97127774	11	3.0	11	95	4	57	46	18	0	34	1.49
97129632--97129656	3	8.3	3	100	0	50	0	32	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97135770--97135837	16	4.2	16	87	7	93	27	0	32	39	1.57
97135770--97135837	32	2.1	32	91	0	109	27	0	32	39	1.57
97135967--97136276	157	2.0	157	94	0	539	44	3	4	47	1.40
97136013--97136334	157	2.0	155	81	5	349	46	4	3	44	1.42
97137159--97137188	13	2.3	13	100	0	60	60	13	6	20	1.55
97139670--97139696	12	2.2	12	100	0	54	51	0	29	18	1.46
97141532--97141774	132	1.8	132	83	5	321	26	17	18	37	1.93
97142437--97142488	26	1.9	26	81	14	61	34	15	1	48	1.56
97144409--97144628	44	4.9	44	80	8	239	27	21	24	26	1.99
97146331--97146371	13	3.2	13	80	16	50	31	0	2	65	1.05
97151057--97151112	18	3.1	18	74	20	53	19	5	5	69	1.28
97151206--97151239	15	2.3	15	89	0	50	14	17	11	55	1.68
97152145--97153249	552	2.0	552	99	0	2174	23	20	18	37	1.94
97155062--97155114	19	2.7	19	80	16	63	83	7	3	5	0.92
97155552--97155601	6	7.8	6	83	16	57	80	0	16	4	0.87
97155552--97155599	18	2.5	18	90	10	69	81	0	14	4	0.84
97156521--97157838	44	30.0	44	73	9	869	29	15	25	30	1.96
97156524--97157840	88	15.0	87	75	8	1034	29	15	25	30	1.96
97156550--97157839	132	9.8	131	86	4	1408	29	15	25	30	1.96
97156550--97157774	526	2.3	525	86	3	1635	29	15	25	30	1.95
97157998--97158193	45	4.4	45	63	15	118	27	18	23	29	1.98
97157784--97158552	134	5.8	134	96	0	1371	27	19	23	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97159345--97159391	17	2.7	17	77	9	51	8	6	4	80	1.00
97159570--97159600	15	2.1	15	93	0	53	45	0	32	22	1.53
97160506--97160561	18	3.1	18	74	20	53	19	5	5	69	1.28
97160655--97160688	15	2.3	15	89	0	50	14	17	11	55	1.68
97162463--97162525	27	2.3	29	81	15	80	26	11	12	49	1.74
97162975--97163046	31	2.3	32	92	2	119	45	11	19	23	1.82
97165121--97165173	22	2.4	23	87	9	83	30	50	3	15	1.61
97165618--97165651	11	3.1	11	88	12	52	0	52	0	47	1.00
97165608--97165651	22	2.0	22	86	8	63	0	56	0	43	0.99
97165616--97165653	11	3.4	11	83	16	51	0	52	0	47	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318