genome.fa.s5.2.7.7.80.10.50.1000.218.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  218  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69117678--69117857	47	3.8	47	91	3	272	32	11	30	25	1.91
69117881--69118007	46	2.8	46	81	0	155	34	10	29	25	1.89
69120632--69120688	27	2.1	27	86	0	78	33	33	8	24	1.86
69122362--69122512	28	5.4	28	91	1	205	32	28	13	25	1.93
69130512--69130662	28	5.4	28	91	1	205	32	28	13	25	1.93
69134382--69134607	40	5.7	40	90	4	291	26	21	26	25	1.99
69141795--69141851	26	2.2	26	78	6	62	17	40	0	42	1.49
69143334--69143391	25	2.3	25	78	0	62	36	18	24	20	1.95
69146837--69146866	15	2.0	15	100	0	60	26	13	6	53	1.64
69149967--69150001	18	1.9	18	88	0	52	20	28	34	17	1.95
69151806--69151838	12	2.8	12	90	4	50	0	24	0	75	0.80
69158101--69158158	30	1.9	30	86	6	82	22	36	27	13	1.92
69168059--69168284	40	5.7	40	88	4	271	25	27	21	25	1.99
69169419--69169535	56	2.1	56	96	0	216	23	23	7	44	1.79
69176016--69176241	40	5.7	40	86	4	253	26	27	20	25	1.99
69176018--69176241	120	1.9	120	82	7	285	25	27	20	25	1.99
69177371--69177490	56	2.1	56	98	0	231	22	23	9	45	1.81
69177642--69177725	42	2.0	42	100	0	168	42	19	7	30	1.78
69188133--69188493	50	7.5	50	75	10	272	27	18	28	24	1.98
69195222--69195293	36	2.0	36	97	0	135	34	22	9	33	1.87
69205742--69205828	44	2.0	44	93	0	147	36	2	28	32	1.70
69216337--69216381	20	2.2	20	88	0	63	35	13	2	48	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69219725--69219832	48	2.3	47	83	3	128	25	28	18	27	1.98
69219758--69220063	45	6.7	45	85	3	355	25	30	16	28	1.96
69230217--69230265	21	2.3	21	89	0	71	48	28	8	14	1.72
69240581--69240625	22	2.0	22	83	8	56	40	0	35	24	1.56
69241176--69241236	7	8.9	7	76	3	61	29	26	16	27	1.97
69241204--69241243	21	1.9	21	89	0	62	37	30	10	22	1.87
69241270--69241337	7	9.7	7	75	10	50	26	2	27	42	1.70
69244809--69244850	23	1.9	21	90	9	66	42	4	0	52	1.22
69245523--69245552	14	2.1	15	93	6	53	70	0	0	30	0.88
69245523--69245556	16	2.2	15	89	5	50	67	0	0	32	0.91
69254576--69254633	12	5.2	12	80	16	79	41	32	5	20	1.75
69254574--69254633	22	2.7	22	97	0	111	40	33	5	21	1.75
69256176--69256234	29	2.0	29	93	0	100	35	25	11	27	1.91
69259677--69259916	124	1.9	124	97	0	453	37	11	12	37	1.80
69270920--69270982	32	2.0	32	87	0	90	28	17	20	33	1.95
69276263--69276424	48	3.4	48	81	3	211	23	26	20	29	1.99
69276263--69276433	94	1.8	94	90	0	279	22	26	20	30	1.98
69277135--69277173	20	2.0	20	85	10	53	35	20	0	43	1.52
69281242--69281451	28	7.5	28	97	0	368	25	12	28	33	1.92
69281217--69281451	84	2.8	83	92	1	371	25	12	28	33	1.92
69300801--69300874	34	2.2	33	85	2	94	29	22	18	28	1.98
69312639--69312784	37	4.0	37	93	1	242	24	21	16	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69312748--69313016	46	5.6	46	83	10	331	28	21	14	35	1.93
69312791--69313010	52	4.3	52	83	8	290	27	22	14	35	1.92
69312748--69313016	98	2.7	98	92	0	448	28	21	14	35	1.93
69319587--69319789	53	3.8	54	76	3	203	20	23	17	37	1.94
69328605--69328638	16	2.1	16	100	0	68	20	0	23	55	1.43
69329719--69329770	12	4.2	12	79	13	52	26	1	0	71	0.97
69329702--69329777	37	2.0	38	92	5	127	26	3	0	69	1.05
69333206--69333306	11	9.2	11	100	0	202	46	0	8	44	1.34
69338710--69338759	25	2.0	25	88	0	73	34	24	16	26	1.95
69338807--69338862	11	5.5	11	71	16	57	35	12	19	32	1.89
69338796--69338862	20	3.3	20	93	0	116	34	11	20	32	1.90
69338912--69338992	24	3.4	24	84	5	110	29	18	22	29	1.97
69339219--69339246	7	4.0	7	100	0	56	57	0	14	28	1.38
69358025--69358180	28	5.6	28	93	1	269	29	31	14	25	1.94
69371569--69371666	41	2.4	41	96	0	187	24	24	25	25	2.00
69372451--69372482	15	2.0	17	88	11	50	25	0	31	43	1.55
69383861--69384035	40	4.3	40	88	2	226	33	26	15	24	1.95
69387270--69387348	41	1.9	41	84	5	106	27	13	27	30	1.95
69391638--69391668	16	1.9	16	93	0	53	74	0	6	19	1.03
69394159--69394341	67	2.8	64	76	8	183	29	16	30	23	1.96
69396359--69396432	27	2.7	27	80	0	94	39	20	8	32	1.82
69396414--69396635	27	8.3	27	85	2	286	33	21	20	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69396360--69396608	54	4.6	54	81	5	227	34	21	17	26	1.95
69397285--69397386	27	3.8	27	87	5	134	18	23	21	36	1.95
69397545--69397629	6	13.8	6	73	18	68	20	18	14	47	1.83
69397522--69397590	31	2.2	32	89	2	104	18	15	13	52	1.75
69397557--69397608	19	2.7	19	87	0	68	19	21	11	48	1.80
69403963--69404091	40	3.2	40	84	6	154	33	20	17	28	1.95
69409215--69409399	40	4.6	40	79	7	205	25	22	27	25	2.00
69409215--69409399	80	2.3	81	85	4	232	25	22	27	25	2.00
69412194--69412235	17	2.5	17	96	0	75	30	14	19	35	1.91
69417880--69417958	37	2.1	37	88	0	113	26	31	17	24	1.97
69418077--69418787	47	14.7	47	91	5	1102	30	29	7	32	1.86
69418077--69418766	49	14.3	49	91	5	1099	30	29	7	32	1.86
69418077--69418787	96	7.4	96	92	4	1164	30	29	7	32	1.86
69420966--69421144	85	2.1	85	97	0	340	26	27	8	37	1.85
69421466--69421616	27	5.6	27	83	2	178	40	19	7	31	1.81
69421628--69421770	27	5.3	27	85	0	187	30	23	7	38	1.83
69421626--69421770	54	2.7	54	91	0	218	31	22	7	38	1.82
69421460--69421797	27	12.5	27	73	10	118	35	21	7	35	1.83
69421628--69421799	54	3.2	54	85	3	204	32	22	7	37	1.82
69421640--69421798	81	2.0	81	83	5	205	31	22	7	38	1.82
69421749--69421834	27	3.2	26	82	8	91	39	23	8	29	1.83
69421758--69421837	27	3.0	27	83	0	97	41	21	7	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69421763--69421861	27	3.7	27	80	0	90	39	21	9	30	1.84
69421852--69422068	27	8.0	27	90	2	310	33	17	22	26	1.96
69422464--69422563	6	16.3	6	74	15	89	19	17	15	49	1.80
69422464--69422543	31	2.6	31	91	0	124	17	18	15	48	1.81
69422517--69422584	18	3.8	18	81	9	68	20	13	14	51	1.76
69424460--69424515	28	2.0	28	100	0	112	14	25	21	39	1.91
69424543--69424911	27	13.6	27	76	7	185	37	21	8	32	1.84
69424807--69424940	27	5.0	27	84	1	108	40	20	8	29	1.83
69424842--69425119	81	3.4	80	82	4	229	37	20	16	25	1.93
69424896--69425118	27	8.3	27	87	0	293	35	19	19	24	1.95
69425513--69425605	6	15.2	6	74	16	66	18	15	15	51	1.76
69425513--69425588	31	2.5	31	86	0	107	18	15	14	51	1.77
69443929--69444099	93	1.8	93	93	0	297	29	28	21	21	1.98
69443921--69444096	46	3.8	46	79	12	207	30	28	20	20	1.98
69443972--69444115	46	3.1	44	78	15	150	29	27	20	22	1.98
69449806--69449869	31	2.1	31	87	0	92	21	21	15	40	1.91
69450064--69450252	24	8.0	24	88	6	262	26	21	22	29	1.99
69450063--69450252	47	4.0	48	87	6	264	26	21	22	29	1.99
69450085--69450251	23	7.1	23	91	3	246	27	20	22	28	1.99
69450298--69450348	20	2.5	20	96	0	93	33	21	9	35	1.86
69451573--69451656	27	3.1	27	91	3	125	20	23	22	33	1.97
69451703--69451974	27	10.0	27	77	4	181	33	8	18	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69451726--69451932	81	2.5	81	79	6	213	30	8	19	41	1.80
69451808--69452012	54	3.8	54	81	3	153	36	8	20	35	1.82
69451925--69452082	27	5.9	27	90	1	219	40	8	22	27	1.84
69451899--69452059	81	2.0	81	82	0	196	40	9	20	29	1.85
69451939--69452136	54	3.7	54	81	2	173	37	10	22	28	1.88
69452088--69452186	27	3.6	27	80	9	103	34	10	17	38	1.83
69456417--69456668	27	9.3	27	82	5	276	23	19	19	36	1.95
69456417--69456666	54	4.6	54	85	1	306	24	19	20	36	1.95
69456421--69456659	81	3.0	81	88	1	338	23	20	19	36	1.95
69456703--69456829	27	4.7	28	82	4	136	28	8	23	39	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318