genome.fa.s5.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  144  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44706894--44706944	17	3.0	17	72	11	50	68	1	25	3	1.17
44712322--44712346	6	4.2	6	100	0	50	48	16	16	20	1.82
44716770--44716932	85	1.9	85	82	5	204	27	25	20	26	1.99
44718889--44718922	14	2.3	15	90	5	52	41	0	2	55	1.15
44729932--44730000	36	1.9	36	88	5	104	21	18	17	42	1.90
44737176--44737309	55	2.4	55	80	4	146	27	29	23	19	1.98
44737615--44737652	17	2.1	19	90	9	62	2	57	0	39	1.12
44739327--44739357	16	1.9	16	100	0	62	22	0	0	77	0.77
44742796--44742861	32	2.1	32	91	0	105	40	21	4	33	1.73
44744641--44744673	16	1.9	18	88	11	52	66	0	0	33	0.92
44744966--44745056	19	4.9	19	86	8	143	36	15	12	36	1.85
44745174--44745213	21	2.0	20	85	5	53	7	2	20	70	1.24
44745406--44745724	45	7.1	45	80	5	331	25	28	15	31	1.96
44745420--44745724	89	3.4	90	80	4	303	25	28	15	30	1.96
44745664--44745930	78	3.4	78	92	2	464	23	23	19	32	1.97
44760922--44760986	32	2.0	32	100	0	130	56	21	3	18	1.54
44773579--44773880	39	7.7	39	93	2	509	30	20	27	21	1.98
44782296--44782603	40	7.7	40	95	0	535	31	20	26	22	1.98
44786488--44786528	19	2.1	20	86	4	57	39	19	4	36	1.73
44787105--44787226	37	3.1	39	77	12	133	33	21	18	26	1.96
44787349--44787375	7	3.9	7	100	0	54	29	29	0	40	1.57
44788055--44788086	17	1.9	16	93	6	55	0	21	0	78	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44788057--44788098	21	2.0	21	81	9	50	0	23	2	73	0.94
44788219--44788260	19	2.1	21	86	8	61	30	7	4	57	1.47
44794566--44794681	41	2.9	39	76	13	121	32	22	18	25	1.97
44795427--44795458	17	1.9	16	93	6	55	0	21	0	78	0.76
44795429--44795470	21	2.0	21	81	9	50	0	23	2	73	0.94
44797156--44797229	26	2.9	26	85	2	105	18	27	22	31	1.98
44799923--44799968	20	2.3	20	84	0	56	36	15	23	23	1.93
44802019--44802101	30	2.7	31	78	12	100	13	22	1	62	1.37
44802077--44802101	12	2.1	12	100	0	50	8	16	0	76	1.02
44802104--44802135	12	2.7	12	100	0	64	28	15	12	43	1.83
44802182--44802238	5	11.0	5	80	10	53	1	15	1	80	0.87
44802186--44802234	26	1.9	26	87	4	73	2	14	2	81	0.87
44804813--44804858	20	2.3	20	92	0	74	34	17	26	21	1.95
44804813--44804859	10	4.7	10	83	0	58	34	17	27	21	1.95
44805928--44806085	79	2.0	79	100	0	316	17	26	15	40	1.89
44813146--44813188	23	2.0	23	86	9	63	48	9	0	41	1.35
44836210--44836255	20	2.3	20	100	0	92	34	30	0	34	1.58
44836988--44837013	11	2.4	11	100	0	52	0	23	0	76	0.78
44843806--44844029	40	5.7	40	85	8	275	25	22	27	24	2.00
44843806--44844029	79	2.8	80	84	9	296	25	22	27	24	2.00
44843806--44844062	79	3.3	78	81	12	258	26	22	27	24	2.00
44855802--44855835	14	2.4	14	90	0	50	35	2	20	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44856697--44856740	15	2.9	15	82	0	61	11	18	13	56	1.66
44859808--44859893	45	1.9	44	88	6	129	25	12	25	36	1.92
44864039--44864218	90	2.0	90	98	0	351	22	19	23	35	1.96
44870398--44870551	42	3.6	44	75	15	160	23	15	28	32	1.95
44870397--44870551	44	3.6	44	78	12	160	23	15	29	32	1.95
44874772--44874813	12	3.5	12	96	0	75	23	42	26	7	1.80
44878599--44878639	19	2.1	20	90	4	66	53	2	9	34	1.47
44880774--44880857	42	2.0	42	95	2	152	27	14	8	50	1.71
44884869--44884918	25	2.0	25	100	0	100	44	20	8	28	1.79
44890447--44890476	14	2.1	14	93	0	51	16	0	36	46	1.47
44894818--44894909	27	3.4	27	82	5	114	28	23	7	40	1.82
44894941--44895091	27	5.6	27	89	0	212	42	21	7	29	1.79
44894908--44895094	54	3.5	52	77	7	194	41	19	9	30	1.82
44894941--44895090	81	1.9	81	89	0	237	42	20	7	29	1.79
44895099--44895154	27	2.1	26	87	9	78	39	12	10	37	1.78
44894941--44895204	110	2.4	108	79	4	253	40	19	9	30	1.82
44895199--44895250	27	1.9	27	84	7	70	38	23	21	17	1.93
44896082--44896151	25	2.8	24	91	4	104	24	27	24	24	2.00
44896081--44896164	25	3.4	24	83	8	98	27	23	23	25	2.00
44896299--44896391	42	2.2	42	92	5	152	31	15	20	33	1.93
44896415--44896555	31	4.5	31	93	0	246	29	17	25	28	1.97
44899720--44899752	10	3.3	10	100	0	66	9	27	21	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44903413--44903477	24	2.8	24	88	2	87	30	24	1	43	1.64
44904818--44904853	15	2.3	15	95	4	63	52	13	0	33	1.41
44910610--44910702	46	2.0	46	91	0	150	33	16	29	21	1.95
44912097--44912143	18	2.6	18	86	0	58	10	12	46	29	1.76
44913220--44913328	26	4.2	26	91	4	168	34	4	24	35	1.76
44913220--44913328	51	2.1	52	89	5	168	34	4	24	35	1.76
44914748--44914822	28	2.8	26	86	6	89	34	20	13	32	1.91
44914921--44915033	27	4.3	26	80	10	122	16	23	23	36	1.94
44918972--44919081	26	4.2	26	90	2	168	34	4	24	36	1.76
44930887--44930996	26	4.2	26	92	2	168	35	4	23	36	1.76
44932435--44932504	26	2.7	25	80	8	68	35	20	11	32	1.88
44932612--44932724	27	4.2	27	79	3	111	16	25	22	35	1.95
44932610--44932733	54	2.3	54	83	2	151	16	26	22	33	1.96
44934804--44934836	11	3.0	11	95	0	57	0	33	0	66	0.92
44934839--44934892	17	3.2	16	81	7	54	9	14	11	64	1.48
44935146--44935210	18	3.5	18	71	8	58	26	16	10	46	1.80
44935139--44935215	38	2.0	38	97	0	145	28	18	11	41	1.85
44940558--44940603	23	2.0	23	91	0	74	50	32	6	10	1.63
44940558--44940627	27	2.7	27	78	8	76	48	34	5	11	1.63
44941601--44941640	17	2.4	17	91	4	64	7	10	12	70	1.35
44945983--44946106	4	30.8	4	68	11	65	21	10	2	65	1.35
44946192--44946233	21	2.0	21	95	0	75	26	9	2	61	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44946187--44946230	21	2.1	22	87	8	65	25	9	2	63	1.35
44946922--44947029	26	4.2	26	92	2	173	33	7	23	36	1.83
44950502--44950542	22	2.0	20	85	9	55	63	0	7	29	1.21
44956533--44956566	2	17.0	2	93	0	59	47	0	2	50	1.16
44956587--44956618	15	2.1	15	94	0	55	28	9	25	37	1.87
44957489--44957539	20	2.5	20	84	12	61	72	1	11	13	1.20
44958528--44958572	21	2.2	20	88	4	63	20	0	11	68	1.19
44961529--44961583	26	2.2	24	77	6	56	25	1	7	65	1.28
44968172--44968718	70	7.7	70	79	4	488	23	16	25	33	1.96
44968156--44968714	286	2.0	280	82	3	690	23	16	25	34	1.96
44976867--44976905	2	20.0	2	94	5	71	51	0	48	0	1.00
44983266--44983306	22	1.9	22	90	5	66	43	0	2	53	1.13
44983410--44983490	38	2.0	40	86	6	112	39	2	7	50	1.44
44984225--44984284	30	2.0	30	93	0	102	60	13	0	26	1.34
44984611--44984657	24	1.9	24	86	4	67	53	4	4	38	1.40
44985015--44985045	14	2.2	14	94	0	53	41	3	19	35	1.67
44994416--44994826	188	2.2	189	89	2	630	32	25	12	30	1.92
44995876--44995908	3	11.0	3	100	0	66	66	0	33	0	0.92
45008559--45008792	48	5.0	48	77	6	237	28	22	21	27	1.99
45008582--45008792	91	2.3	94	83	5	250	27	21	21	28	1.99
45010780--45010821	22	2.0	21	85	4	57	28	0	21	50	1.49
45011264--45011316	23	2.2	24	86	3	72	22	24	13	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45036818--45036975	43	3.7	43	77	8	160	27	16	24	32	1.96
45039522--45039619	27	3.6	27	92	0	160	30	13	16	39	1.87
45039612--45039682	27	2.6	27	74	14	74	47	19	14	18	1.82
45039765--45039814	23	2.2	23	86	13	68	26	14	18	42	1.87
45040442--45040531	33	2.7	33	91	3	146	26	22	16	34	1.95
45040601--45040714	47	2.4	47	83	4	122	29	29	12	28	1.93
45040616--45040723	47	2.3	48	83	3	137	31	26	10	31	1.89
45040742--45040921	31	5.8	31	85	0	243	27	26	17	27	1.98
45040897--45041063	50	3.3	50	82	0	199	26	22	16	34	1.95
45047551--45047598	21	2.3	21	81	0	51	45	2	16	35	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318