genome.fa.s5.2.7.7.80.10.50.1000.317.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  317  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100097193--100097234	22	1.9	22	85	9	59	59	0	0	40	0.97
100097174--100097278	40	2.6	42	73	11	96	60	0	3	35	1.15
100097394--100097427	17	2.0	17	88	0	50	20	5	0	73	1.04
100098728--100098828	43	2.3	43	84	3	123	25	15	22	35	1.94
100100499--100100555	20	2.8	20	84	7	69	26	3	3	66	1.24
100100719--100100761	20	2.2	20	86	0	59	30	16	23	30	1.96
100108280--100108355	14	5.4	14	75	0	53	53	2	15	27	1.55
100108292--100108338	7	6.7	7	80	9	51	65	2	6	25	1.27
100116914--100116961	22	2.2	22	88	0	69	10	4	16	68	1.33
100128309--100128375	29	2.3	28	82	10	73	47	1	7	43	1.40
100128519--100128573	23	2.4	22	79	8	56	63	5	0	30	1.17
100128600--100128643	23	1.9	23	90	0	70	54	2	2	40	1.25
100131531--100131574	21	2.1	21	87	8	63	15	9	0	75	1.05
100132304--100132348	23	2.0	23	91	8	74	37	0	11	51	1.38
100132475--100132537	17	3.5	17	72	10	54	30	6	6	57	1.49
100132460--100132550	35	2.6	33	73	19	87	29	4	6	59	1.42
100132576--100132622	23	2.0	24	83	8	60	21	8	4	65	1.37
100133121--100133174	3	18.3	3	78	17	60	33	3	0	62	1.12
100133472--100133625	77	2.0	77	98	0	299	37	14	8	40	1.76
100136672--100136702	2	15.5	2	93	0	53	54	45	0	0	0.99
100138120--100138189	34	2.1	34	97	0	131	35	8	12	42	1.74
100140577--100140681	51	2.1	51	100	0	210	27	23	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100145158--100145218	20	3.0	20	80	4	77	55	9	11	22	1.64
100150165--100150189	2	12.5	2	100	0	50	52	0	0	48	1.00
100152550--100152583	13	2.5	14	90	4	52	29	0	0	70	0.87
100152821--100152862	21	2.0	22	90	4	68	26	2	0	71	0.98
100152821--100152870	21	2.3	22	86	6	66	28	4	0	68	1.08
100157885--100157928	22	2.0	22	86	4	63	31	2	2	63	1.19
100157930--100157983	18	3.0	18	82	15	51	37	0	5	57	1.22
100157930--100157965	19	1.9	19	88	5	56	36	0	8	55	1.30
100158346--100158374	6	4.8	6	100	0	58	0	34	17	48	1.47
100161266--100161310	19	2.4	19	81	3	56	40	0	17	42	1.50
100164143--100164167	2	12.5	2	100	0	50	48	0	0	52	1.00
100171795--100172050	39	6.6	39	94	0	449	27	26	21	24	1.99
100181978--100182016	17	2.3	17	90	0	60	43	0	0	56	0.99
100185275--100185303	12	2.4	12	100	0	58	27	17	24	31	1.97
100188212--100188269	30	1.9	31	82	3	73	17	13	12	56	1.66
100194315--100194358	11	4.0	11	81	0	52	25	11	4	59	1.51
100199506--100199552	20	2.4	20	86	10	62	31	2	4	61	1.27
100199523--100199560	20	1.9	20	88	0	58	31	5	7	55	1.51
100199506--100199569	21	3.2	19	82	12	60	31	4	4	59	1.38
100199638--100199692	22	2.6	22	88	11	80	30	0	3	65	1.10
100199670--100199745	19	4.3	19	71	18	65	39	1	1	57	1.15
100199699--100199753	8	6.6	8	75	21	51	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100199698--100199748	15	3.2	15	76	15	57	45	0	0	54	0.99
100199677--100199746	33	2.1	33	86	7	97	41	1	1	55	1.17
100202004--100202107	34	3.0	35	92	4	167	45	43	0	11	1.40
100203320--100203359	19	2.2	19	86	4	55	27	2	0	70	1.01
100203333--100203406	3	25.3	3	76	10	64	28	2	1	67	1.12
100203332--100203375	10	4.4	10	83	8	54	22	0	2	75	0.92
100203333--100203406	21	3.3	22	79	7	78	28	2	1	67	1.12
100203798--100203888	21	4.2	20	72	17	67	32	3	5	58	1.37
100203837--100203875	20	2.0	20	85	10	53	33	2	7	56	1.41
100204942--100204997	22	2.5	22	77	11	69	53	8	8	28	1.62
100209390--100209639	86	2.9	86	82	2	279	32	20	17	29	1.96
100210981--100211134	28	5.6	27	84	7	170	29	27	14	27	1.96
100216785--100216911	28	4.6	27	80	7	132	29	26	14	29	1.95
100219782--100219844	29	2.1	30	85	2	83	63	3	7	25	1.37
100226810--100226839	11	2.7	11	100	0	60	90	0	10	0	0.47
100228795--100228849	27	2.0	28	82	13	69	38	12	1	47	1.52
100230034--100230622	291	2.0	290	91	0	946	31	9	23	35	1.86
100236981--100237006	13	2.0	13	100	0	52	61	7	7	23	1.49
100237301--100237503	41	5.0	40	83	6	212	33	22	22	21	1.97
100237307--100237503	82	2.4	82	83	3	236	33	23	22	20	1.97
100237486--100237521	18	2.0	18	100	0	72	38	27	11	22	1.88
100237445--100237562	59	2.0	59	89	0	182	31	22	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100237510--100237701	41	4.5	41	75	12	170	30	20	27	22	1.98
100237556--100237632	25	3.1	25	98	0	145	29	22	28	19	1.98
100237855--100237880	7	3.7	7	100	0	52	15	0	26	57	1.38
100238617--100238660	14	3.1	14	80	9	54	20	0	47	31	1.50
100239046--100239086	21	2.0	21	85	0	55	24	0	29	46	1.53
100242446--100242582	9	14.6	9	72	8	103	45	20	2	32	1.63
100242446--100242580	57	2.4	57	84	0	171	45	20	2	31	1.64
100245901--100246093	47	4.0	48	80	8	187	23	17	29	29	1.97
100252214--100252327	44	2.6	44	83	6	142	19	20	31	28	1.97
100252210--100252687	43	11.2	42	77	7	299	21	20	26	30	1.98
100252403--100252713	85	3.6	84	76	11	215	22	22	25	29	1.99
100252449--100252693	127	1.9	128	82	8	304	21	20	26	31	1.98
100252973--100253009	18	2.0	19	85	15	51	54	8	0	37	1.30
100253985--100254062	34	2.3	34	82	12	99	56	5	1	37	1.30
100266118--100266183	32	2.1	32	94	0	114	51	9	15	24	1.72
100267086--100267251	82	2.0	82	83	0	206	47	10	9	32	1.70
100273872--100273942	27	2.7	24	72	18	52	59	2	0	38	1.12
100274123--100274149	3	9.0	3	100	0	54	33	0	0	66	0.92
100274552--100274592	21	2.0	21	85	9	57	58	0	2	39	1.11
100279381--100279429	21	2.3	21	78	0	62	38	4	14	42	1.64
100282094--100282150	23	2.5	23	80	8	64	38	0	3	57	1.16
100286105--100286138	12	3.1	11	91	8	52	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100290239--100290289	22	2.3	22	75	0	57	9	13	11	64	1.49
100292693--100292768	33	2.3	34	90	4	127	34	10	5	50	1.59
100293757--100293829	20	3.4	22	79	11	89	58	0	1	39	1.06
100295834--100295902	19	3.5	19	71	15	52	46	1	8	43	1.43
100298239--100298307	21	3.4	21	71	15	72	36	1	7	55	1.37
100298695--100298737	18	2.4	19	81	18	56	74	0	23	2	0.93
100302903--100302971	19	3.5	19	71	15	52	46	1	8	43	1.43
100305330--100305354	12	2.1	12	100	0	50	24	28	16	32	1.96
100305623--100305667	23	2.0	23	82	4	56	28	4	22	44	1.72
100315236--100315271	5	7.2	5	93	0	63	38	2	58	0	1.13
100316298--100316519	109	2.0	109	92	0	372	29	17	15	37	1.91
100324668--100324714	21	2.1	23	84	7	62	31	4	21	42	1.72
100325960--100326136	50	3.5	50	91	2	275	35	15	22	26	1.94
100326112--100326284	31	5.6	31	92	0	265	28	18	27	26	1.98
100326316--100326529	47	4.7	46	82	6	202	28	15	26	29	1.96
100326320--100326573	42	5.6	48	82	10	220	29	14	26	29	1.95
100328096--100328177	38	2.1	40	82	8	98	28	23	23	25	2.00
100328587--100328638	26	2.0	26	96	0	95	28	15	9	46	1.77
100333605--100333637	11	2.8	12	86	4	50	30	0	9	60	1.27
100333623--100333678	22	2.7	21	78	13	62	21	0	7	71	1.09
100336082--100336244	47	3.4	47	77	4	159	23	13	28	33	1.93
100336111--100336243	46	2.9	47	80	4	144	23	13	29	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100339516--100339554	20	2.0	20	89	0	60	56	15	12	15	1.68
100348682--100348723	21	2.0	21	85	0	57	40	16	9	33	1.81
100350260--100350459	100	2.0	100	99	0	391	42	14	20	23	1.88
100355445--100355824	195	1.9	196	89	1	584	36	21	11	31	1.89
100358055--100358089	12	3.0	12	87	8	54	65	0	0	34	0.93
100365983--100366039	28	2.0	30	82	6	73	31	10	5	52	1.58
100367586--100367625	4	10.0	4	100	0	80	25	0	25	50	1.50
100374636--100374666	16	1.9	16	93	0	53	41	3	6	48	1.45
100381356--100381391	18	2.0	18	100	0	72	27	22	22	27	1.99
100396255--100396304	17	2.7	20	78	18	70	10	0	44	46	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318