genome.fa.s5.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  122  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38313893--38314002	55	2.0	55	96	0	202	24	15	17	42	1.88
38313943--38314338	125	3.2	125	80	3	456	23	15	15	45	1.84
38316332--38316527	69	2.8	69	91	0	293	34	10	36	18	1.85
38316332--38316561	69	3.3	69	86	4	286	35	10	35	18	1.85
38316970--38317021	26	2.0	26	96	0	95	32	15	15	36	1.89
38320780--38320823	18	2.4	18	100	0	88	9	0	36	54	1.32
38324930--38324958	14	2.0	15	93	6	51	31	0	0	68	0.89
38326098--38326149	25	2.0	25	96	3	95	30	0	7	61	1.24
38329109--38329207	51	1.9	51	97	0	189	15	16	43	25	1.86
38342162--38342204	16	2.8	16	89	3	70	30	0	2	67	1.03
38342174--38342219	16	2.7	16	86	10	56	28	2	6	63	1.31
38342754--38342826	27	2.7	26	83	12	87	34	6	5	53	1.51
38342956--38342999	21	2.1	21	95	4	81	34	4	4	56	1.40
38342920--38343020	46	2.2	46	82	10	118	32	2	4	59	1.34
38344492--38344536	23	2.0	23	86	0	63	37	0	17	44	1.49
38350661--38351152	242	2.0	244	90	0	772	26	25	11	37	1.90
38354883--38354935	22	2.4	22	87	0	79	39	3	18	37	1.69
38354836--38354999	86	1.9	86	88	0	247	37	2	17	42	1.62
38354914--38354989	34	2.2	34	88	4	109	42	2	15	39	1.61
38354906--38355026	64	2.0	58	87	9	170	38	1	19	41	1.61
38354905--38355029	28	4.1	29	78	12	135	37	1	19	41	1.61
38355084--38355332	124	2.0	123	85	4	340	38	17	15	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38360401--38360432	16	2.1	16	88	11	50	71	0	0	28	0.86
38362689--38362831	69	2.1	69	89	0	214	36	10	36	16	1.83
38367395--38367446	16	3.4	16	82	17	74	51	1	0	46	1.12
38367461--38367491	16	1.9	16	100	0	62	61	0	0	38	0.96
38367530--38367586	15	3.5	15	73	17	60	50	1	0	47	1.11
38372747--38372771	13	1.9	13	100	0	50	8	32	36	24	1.84
38378789--38378835	23	2.0	23	95	0	85	29	23	0	46	1.52
38387258--38387366	42	2.6	42	83	4	130	25	17	24	32	1.97
38387258--38387377	43	2.8	43	82	3	136	25	17	25	31	1.97
38389250--38389348	43	2.3	43	80	3	110	27	13	25	34	1.93
38393832--38393875	18	2.4	18	92	0	70	22	18	47	11	1.80
38394256--38394300	23	1.9	24	86	4	65	20	2	51	26	1.59
38401499--38401545	21	2.3	20	86	13	62	44	10	8	36	1.70
38401494--38401545	23	2.5	19	84	12	59	44	9	9	36	1.70
38403805--38403886	39	2.1	39	97	0	155	47	12	10	29	1.75
38404267--38404348	38	2.2	38	84	0	101	41	23	19	15	1.90
38405971--38406067	40	2.5	38	80	6	122	36	35	13	15	1.87
38407995--38408059	34	1.9	33	82	14	80	20	26	21	32	1.97
38411438--38411503	28	2.3	30	84	10	84	18	3	3	75	1.06
38418730--38418814	34	2.5	34	82	0	107	23	12	29	34	1.92
38420127--38420167	21	2.0	21	85	0	55	41	7	9	41	1.66
38421922--38421995	31	2.4	31	90	0	121	17	2	43	36	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38425673--38425728	28	2.0	28	82	0	67	32	8	0	58	1.29
38425779--38425843	14	4.6	14	74	11	53	33	3	0	63	1.10
38426875--38427000	45	2.8	45	92	2	209	26	29	23	19	1.99
38426993--38427201	38	5.5	38	91	1	312	32	26	21	20	1.97
38427498--38427632	43	3.1	44	84	6	193	28	28	17	25	1.97
38430782--38430822	18	2.3	18	91	0	64	34	9	0	56	1.32
38430788--38430831	18	2.6	17	85	7	54	36	9	0	54	1.32
38430930--38430990	21	2.8	22	79	16	65	29	4	0	65	1.13
38432879--38432958	33	2.4	32	77	6	88	38	15	20	26	1.91
38433819--38433920	37	2.8	37	76	7	109	36	7	17	38	1.79
38437000--38437046	22	2.2	21	88	3	67	36	21	6	36	1.79
38437000--38437059	19	2.9	21	85	7	70	35	20	10	35	1.86
38437392--38437427	16	2.2	16	95	0	63	52	5	2	38	1.39
38449053--38449391	27	12.5	27	88	1	444	36	19	20	23	1.95
38449050--38449395	82	4.2	81	89	1	512	36	19	20	24	1.95
38449637--38449819	67	2.7	67	90	0	276	22	26	19	32	1.97
38449821--38449880	27	2.3	26	85	2	75	25	23	16	35	1.95
38449999--38450080	6	13.3	6	71	19	62	19	18	14	47	1.82
38449999--38450071	31	2.4	31	88	0	110	19	19	13	47	1.82
38453537--38453571	18	1.9	18	88	0	52	57	11	0	31	1.34
38453523--38453574	27	1.9	27	84	0	68	61	11	0	26	1.30
38454288--38454359	36	2.1	35	87	10	105	26	16	5	51	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38455065--38455614	179	3.1	177	82	6	609	30	22	17	30	1.96
38456100--38456230	64	2.0	64	91	2	210	39	12	16	32	1.85
38463087--38463121	18	1.9	18	88	0	52	57	11	0	31	1.34
38463073--38463124	27	1.9	27	84	0	68	61	11	0	26	1.30
38463845--38463916	36	2.1	35	87	10	105	26	16	5	51	1.66
38473659--38473766	26	4.2	26	89	0	162	35	22	9	33	1.86
38479321--38479426	26	4.1	26	92	0	176	35	22	7	33	1.83
38485543--38485650	26	4.2	26	92	0	180	32	6	24	37	1.81
38488851--38488881	12	2.6	12	89	0	53	9	22	51	16	1.73
38493759--38493866	26	4.2	26	92	0	171	33	6	23	37	1.80
38497217--38497259	20	2.2	20	83	8	52	39	0	9	51	1.34
38497638--38497671	12	2.8	12	83	16	52	41	0	5	52	1.25
38498732--38498765	16	2.1	16	89	10	52	55	0	8	35	1.31
38499220--38499283	18	3.6	18	80	0	83	39	10	12	37	1.78
38499153--38499269	62	1.9	62	82	3	146	34	10	13	41	1.78
38499210--38499292	36	2.3	36	87	0	112	38	8	13	39	1.75
38499856--38499894	13	2.9	13	84	3	51	28	2	10	58	1.44
38501307--38501528	40	5.6	40	92	1	367	22	22	26	27	2.00
38508347--38508416	25	2.8	26	69	26	60	51	11	4	32	1.57
38513753--38513930	47	3.8	46	84	5	207	32	26	19	20	1.97
38518392--38518526	67	2.0	67	95	0	243	28	31	19	20	1.97
38521211--38521398	40	4.7	40	93	0	322	21	26	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38525450--38525551	28	3.7	28	89	2	161	27	35	13	23	1.93
38527144--38527175	14	2.4	13	90	10	55	75	0	0	25	0.81
38531452--38531489	20	2.0	20	84	5	51	36	7	21	34	1.82
38534072--38534120	23	2.2	23	88	3	73	24	18	22	34	1.96
38534081--38534183	24	4.4	22	75	14	66	29	22	16	32	1.96
38539758--38539805	11	4.6	11	80	12	57	35	12	18	33	1.89
38539852--38539947	26	3.8	25	86	5	106	27	26	20	26	1.99
38539862--38539960	26	3.9	26	75	18	77	27	25	20	27	1.99
38540167--38540250	31	2.7	31	90	1	134	30	19	27	22	1.98
38541669--38541826	27	5.9	27	89	0	217	29	22	7	39	1.82
38541669--38541826	81	2.0	81	93	0	271	29	22	7	39	1.82
38541624--38542051	27	15.9	27	79	6	197	37	21	7	32	1.83
38541656--38541854	81	2.5	81	83	0	263	33	22	7	36	1.82
38541818--38542024	80	2.6	80	84	3	247	42	21	8	28	1.81
38541818--38542030	54	4.0	53	81	8	234	41	20	8	29	1.82
38542062--38542113	27	1.9	27	84	7	70	38	13	13	34	1.84
38542154--38542227	27	2.7	27	78	12	80	36	21	20	21	1.95
38543233--38543326	42	2.2	42	94	0	161	25	13	22	38	1.91
38543348--38543457	31	3.6	31	96	1	195	28	18	24	29	1.98
38544184--38544350	27	6.2	27	86	0	199	28	20	8	42	1.82
38544186--38544345	81	2.0	81	86	2	223	28	20	8	43	1.80
38544342--38544484	27	5.3	26	73	10	101	37	21	11	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38544382--38544494	27	4.2	27	79	6	122	41	20	7	30	1.81
38544406--38544583	54	3.3	53	78	7	160	40	17	9	32	1.82
38544435--38544564	27	4.7	27	77	12	113	41	18	7	32	1.79
38559670--38559715	21	2.2	21	100	0	92	39	4	28	28	1.76
38560152--38560184	16	2.0	17	88	5	50	36	0	18	45	1.49
38560312--38560410	24	4.2	23	76	17	80	27	21	18	33	1.96
38561755--38561791	14	2.6	15	83	12	51	18	2	8	70	1.25
38562379--38562490	59	1.9	59	92	0	188	23	15	32	29	1.95
38570293--38570346	23	2.3	24	78	9	58	29	1	16	51	1.55
38573075--38573297	69	3.2	69	82	3	261	34	8	35	20	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318