Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  29  of  318  ( 38109 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10730547--10730586
19
2.2
19
86
8
57
82
0
12
5
0.82
10732245--10732619
190
2.0
189
94
0
660
29
12
15
42
1.84
10733630--10733661
6
5.3
6
100
0
64
84
0
15
0
0.63
10733554--10733764
115
1.8
115
92
2
361
49
11
17
21
1.78
10747679--10747884
105
2.0
105
89
0
313
16
17
16
49
1.81
10753091--10753122
17
1.9
16
93
6
55
21
0
9
68
1.17
10755496--10755557
32
1.9
32
93
0
106
20
24
12
41
1.87
10759008--10759033
2
13.0
2
100
0
52
50
50
0
0
1.00
10759033--10759067
2
17.5
2
100
0
70
0
51
0
48
1.00
10772718--10772781
29
2.2
28
86
8
101
45
3
10
40
1.55
10772924--10773127
102
2.0
102
97
0
381
41
6
8
43
1.61
10773357--10773399
22
1.9
23
85
4
61
20
0
9
69
1.15
10777390--10777515
65
1.9
65
91
0
207
36
3
11
47
1.59
10787772--10787895
33
3.8
33
96
0
230
17
9
42
29
1.81
10792240--10792361
50
2.5
50
95
1
219
40
19
17
22
1.91
10801943--10802000
30
1.9
31
96
3
109
27
18
6
46
1.75
10811098--10811266
46
3.7
46
79
13
211
28
28
20
21
1.98
10811103--10811273
93
1.8
93
94
0
306
28
28
21
21
1.99
10811692--10811751
30
2.0
30
83
6
77
30
23
8
38
1.84
10814933--10814993
15
3.6
18
75
22
60
68
0
0
31
0.89
10814946--10814996
14
3.7
14
78
16
54
72
0
0
27
0.85
10814948--10814997
19
2.6
19
81
12
59
74
0
0
26
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10819880--10819944
33
1.9
35
90
6
107
30
15
1
52
1.52
10824580--10824608
14
2.1
14
100
0
58
51
20
13
13
1.75
10827900--10827932
16
2.0
17
88
5
50
45
3
0
51
1.16
10827898--10827944
14
3.1
15
76
11
51
44
4
0
51
1.21
10828229--10828256
4
7.0
4
100
0
56
25
0
0
75
0.81
10839561--10839596
4
9.0
4
87
0
54
47
27
0
25
1.52
10842759--10842792
6
5.3
6
92
3
50
82
0
14
2
0.79
10844099--10844152
3
18.0
3
100
0
108
33
0
33
33
1.58
10855547--10855612
17
3.9
18
73
15
59
34
0
1
63
1.04
10860161--10860195
18
1.9
18
88
0
52
28
2
0
68
1.04
10862170--10862292
18
6.8
18
86
0
174
29
23
14
32
1.94
10862164--10862292
36
3.6
36
93
0
204
29
23
14
32
1.94
10862170--10862292
54
2.3
54
94
0
210
29
23
14
32
1.94
10867013--10867048
16
2.2
16
90
0
54
30
8
11
50
1.67
10868345--10868382
17
2.4
16
82
8
51
52
0
0
47
1.00
10872125--10872186
20
2.6
24
73
23
60
53
4
0
41
1.22
10884951--10884988
6
6.3
6
100
0
76
15
50
0
34
1.45
10895032--10895076
16
2.8
16
81
15
56
31
11
0
57
1.33
10900649--10900688
19
2.0
21
85
9
57
32
5
0
62
1.17
10916631--10916671
19
2.3
19
79
8
50
19
2
9
68
1.29
10919109--10919151
21
2.0
21
100
0
86
39
18
9
32
1.83
10920201--10920236
16
2.4
16
90
9
58
63
0
0
36
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10923041--10923095
27
2.0
27
100
0
110
38
18
25
18
1.93
10923471--10923590
55
2.2
55
83
3
152
51
7
8
32
1.60
10942300--10942324
13
1.9
13
100
0
50
72
0
4
24
1.02
10942379--10942433
28
2.0
27
92
3
92
43
0
7
49
1.30
10943278--10943313
18
2.1
18
89
5
56
41
0
25
33
1.55
10945042--10945088
22
2.2
22
88
7
71
34
4
4
57
1.38
10948537--10948587
19
2.9
17
80
19
61
70
0
0
29
0.87
10948676--10948713
20
1.9
20
94
0
67
31
5
0
63
1.17
10962692--10962790
33
3.0
31
79
15
85
49
0
2
48
1.12
10962690--10962798
9
12.0
9
69
20
50
47
0
2
49
1.15
10971151--10971179
3
9.7
3
100
0
58
68
0
31
0
0.89
10973224--10973256
3
11.0
3
100
0
66
66
0
0
33
0.92
10973380--10973430
3
17.3
3
75
4
50
60
3
1
33
1.26
10975029--10976052
132
7.8
132
96
0
1681
29
25
16
28
1.97
10987987--10988019
3
11.0
3
100
0
66
66
0
0
33
0.92
10988742--10988779
16
2.4
16
82
4
51
13
0
2
84
0.73
10989644--10989681
15
2.4
16
86
4
51
52
2
7
36
1.45
10990044--10990097
9
5.8
9
82
2
63
53
9
3
33
1.50
10990563--10990595
11
3.0
11
91
8
50
45
0
54
0
0.99
10990697--10990737
7
5.4
7
86
11
55
17
2
0
80
0.82
10994563--10994604
20
2.1
20
86
8
59
73
11
0
14
1.09
10996496--10996588
48
2.0
47
85
10
127
40
27
12
18
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11013973--11014221
77
3.3
75
87
6
321
32
30
17
19
1.95
11021048--11021296
77
3.3
75
87
6
321
32
30
17
19
1.95
11023739--11024002
101
2.6
101
96
0
483
29
23
15
32
1.95
11023742--11024002
51
5.2
51
90
1
400
29
22
15
32
1.95
11026071--11026110
20
2.0
21
85
14
57
57
0
2
40
1.12
11040684--11040745
23
2.7
22
83
13
81
27
0
3
69
1.04
11041120--11041146
5
5.4
5
100
0
54
22
0
0
77
0.76
11041166--11041205
17
2.3
18
86
4
55
37
2
0
60
1.11
11041747--11041788
16
2.4
17
84
11
50
59
2
2
35
1.23
11042032--11042090
17
3.5
17
97
2
111
25
0
40
33
1.56
11042326--11042360
18
2.0
17
88
5
52
54
0
0
45
0.99
11042220--11042527
157
2.0
155
96
1
562
45
2
4
47
1.37
11042463--11042515
16
3.4
16
79
7
65
58
0
0
41
0.98
11042463--11042503
15
2.7
16
81
11
50
56
0
0
43
0.99
11042463--11042528
16
4.2
16
76
16
59
56
1
0
42
1.08
11042463--11042528
32
2.1
30
83
10
80
56
1
0
42
1.08
11042520--11042838
59
5.2
65
66
21
240
49
5
2
42
1.42
11042580--11042631
15
3.6
15
80
12
56
53
1
0
44
1.11
11042463--11042858
120
3.3
120
95
2
692
50
5
2
42
1.37
11042700--11042751
15
3.6
15
80
12
56
53
1
0
44
1.11
11049630--11049769
39
3.5
40
95
2
239
32
17
2
48
1.59
11050372--11050428
22
2.5
23
85
2
71
35
31
3
29
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11050879--11050903
13
1.9
13
100
0
50
8
28
16
48
1.74
11050886--11051367
44
11.0
44
77
8
439
25
24
18
31
1.98
11050893--11051367
133
3.6
132
91
1
740
25
24
18
30
1.98
11051465--11052455
205
4.8
205
93
1
1605
29
22
17
29
1.97
11066622--11066665
14
3.1
14
84
12
63
52
2
0
45
1.13
11070713--11070737
11
2.3
11
100
0
50
0
0
8
92
0.40
11071933--11071962
3
10.0
3
92
0
51
63
0
0
36
0.95
11072619--11072644
11
2.4
11
100
0
52
0
42
7
50
1.31
11072680--11072719
20
2.0
20
85
9
55
2
15
5
77
1.04
11072849--11072916
31
2.3
28
78
9
73
41
2
1
54
1.24
11072895--11072933
21
1.9
20
84
5
51
46
2
0
51
1.14
11074703--11074756
16
3.4
15
87
10
72
66
1
1
29
1.12
11074699--11074756
24
2.4
24
82
5
73
67
1
1
29
1.11
11074699--11074756
8
7.2
8
80
7
64
67
1
1
29
1.11
11074920--11074986
29
2.3
29
84
5
82
58
4
4
32
1.38
11074861--11075076
25
8.7
25
68
16
119
55
4
6
34
1.45
11075037--11075082
25
1.9
25
86
8
69
60
0
4
34
1.16
11075572--11075716
30
4.8
30
87
0
218
24
4
47
24
1.69
11075572--11075715
60
2.4
60
92
0
243
24
4
47
23
1.69
11076465--11076514
14
3.6
14
81
7
57
64
4
12
20
1.43
11076494--11076889
73
5.3
73
84
4
479
34
21
16
27
1.95
11076906--11077139
78
3.1
75
87
6
318
36
20
16
26
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11076604--11077207
331
1.8
329
86
7
869
34
20
17
27
1.95
11076907--11077303
71
5.2
71
77
16
318
36
18
16
28
1.93
11077020--11077372
155
2.2
156
84
8
450
34
18
16
30
1.93
11077238--11077404
88
1.9
87
82
7
212
41
16
13
28
1.87
11077396--11077714
77
4.3
74
81
7
331
33
19
16
30
1.94
11077563--11077941
151
2.4
163
85
9
472
32
21
16
30
1.95
11077627--11077804
89
2.0
87
89
5
268
38
17
14
29
1.89
11077712--11077949
75
3.2
75
85
7
340
33
21
16
28
1.95
11080479--11080606
53
2.4
53
85
2
177
29
27
16
26
1.97
11080479--11080633
53
2.9
53
83
4
172
30
27
15
27
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318