genome.fa.s5.2.7.7.80.10.50.1000.234.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  234  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74432565--74432609	23	2.0	22	86	4	63	42	22	17	17	1.89
74436220--74436538	46	6.9	46	93	0	460	21	23	13	40	1.90
74438671--74438729	11	5.2	11	80	8	73	64	0	1	33	1.04
74439243--74439304	30	2.1	30	96	0	115	38	17	16	27	1.91
74443007--74443060	20	2.6	20	82	11	56	25	0	7	66	1.17
74443025--74443056	17	1.9	17	93	6	57	31	0	3	65	1.08
74451654--74451710	19	3.1	19	80	17	66	61	0	1	36	1.07
74457708--74457766	28	2.1	28	87	0	82	6	28	5	59	1.45
74458318--74458349	16	2.1	16	88	11	50	50	6	21	21	1.71
74458606--74458692	45	1.9	45	88	4	131	50	20	5	22	1.69
74458607--74458702	45	2.1	45	84	7	124	48	23	4	22	1.68
74463143--74463356	48	4.5	47	79	6	209	29	18	28	23	1.98
74463143--74463314	94	1.8	95	88	3	267	31	19	27	21	1.97
74463143--74463314	48	3.6	48	81	3	213	31	19	27	21	1.97
74470936--74470982	13	3.7	13	78	16	62	53	14	2	29	1.53
74470986--74471042	29	1.9	30	85	3	80	56	14	7	22	1.62
74471008--74471122	26	4.4	26	70	21	80	54	16	3	25	1.57
74471061--74471235	4	45.2	4	73	19	90	55	17	1	25	1.51
74471006--74471246	77	3.2	75	74	18	207	56	15	2	26	1.52
74470996--74471271	138	2.0	135	82	10	337	55	15	3	26	1.56
74471058--74471251	53	3.8	53	75	14	135	56	15	1	26	1.49
74471077--74471280	62	3.5	60	74	18	166	55	15	2	25	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74471058--74471154	29	3.6	26	75	19	101	53	18	1	26	1.51
74476995--74477099	32	3.3	32	94	0	174	41	25	3	28	1.73
74478896--74479049	67	2.3	68	86	3	204	29	30	18	21	1.97
74478746--74479049	68	4.5	68	72	11	237	31	26	17	24	1.97
74478749--74479132	204	1.9	204	85	1	536	31	26	18	24	1.97
74482528--74482585	29	2.0	28	83	3	71	46	0	1	51	1.11
74482542--74482597	29	1.9	29	85	7	78	44	0	0	55	0.99
74486998--74487024	13	2.1	13	100	0	54	51	22	0	25	1.48
74487336--74487377	17	2.4	18	84	4	50	19	2	4	73	1.12
74490879--74490928	5	10.0	5	77	16	50	22	0	2	76	0.89
74495066--74495115	25	2.0	24	81	11	57	48	16	12	24	1.79
74499800--74499850	22	2.3	23	80	13	61	33	0	3	62	1.13
74499786--74499945	83	1.9	82	87	1	230	32	1	5	60	1.29
74500056--74500172	18	6.9	18	65	24	58	61	0	1	35	1.12
74500049--74500149	35	2.9	34	79	8	114	61	0	1	35	1.14
74500094--74500163	22	3.0	22	77	18	70	58	0	2	38	1.13
74500852--74500903	27	1.9	27	81	14	63	57	5	1	34	1.33
74509873--74509917	21	2.1	21	83	0	54	51	17	13	17	1.77
74511193--74511233	14	2.7	15	85	11	57	48	0	0	51	1.00
74512730--74512762	16	2.0	17	94	5	59	42	0	3	54	1.15
74517249--74517568	46	7.0	46	85	2	392	41	14	23	19	1.89
74517260--74517553	138	2.1	138	89	0	435	42	14	23	19	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74518907--74518989	30	2.8	29	78	10	78	38	8	12	40	1.73
74524457--74524508	20	2.6	20	84	6	61	28	32	0	38	1.57
74526741--74526812	37	1.9	37	97	0	135	37	1	9	51	1.44
74526885--74526937	22	2.3	23	75	9	56	54	3	3	37	1.36
74529258--74529306	20	2.7	18	75	12	55	53	6	0	40	1.26
74539134--74539159	11	2.4	11	100	0	52	42	26	0	30	1.56
74547084--74547135	24	2.2	24	89	0	77	55	9	1	32	1.43
74549046--74549097	24	2.2	24	89	0	77	55	9	1	32	1.43
74551348--74551385	5	7.6	5	93	0	67	81	2	0	15	0.80
74552154--74552194	16	2.3	18	88	12	59	43	2	0	53	1.13
74553406--74553438	9	3.7	9	100	0	66	54	9	0	36	1.32
74562351--74562462	43	2.6	42	77	12	120	23	19	25	31	1.98
74562376--74562458	43	2.0	42	88	7	123	26	20	21	31	1.98
74568552--74568624	23	3.2	23	84	0	83	38	19	13	28	1.90
74568567--74568651	23	3.7	23	82	0	89	40	18	15	25	1.90
74569073--74569097	12	2.1	12	100	0	50	52	40	0	8	1.31
74570940--74570995	17	3.2	17	73	9	51	48	7	0	44	1.30
74572985--74573311	164	2.0	164	99	0	645	32	10	12	44	1.76
74581567--74581991	48	8.8	47	77	8	345	28	17	27	26	1.97
74581572--74581991	145	2.9	145	81	7	444	29	17	27	26	1.97
74581567--74581944	193	2.0	192	82	4	467	28	17	27	27	1.97
74584168--74584253	43	2.0	43	97	0	163	22	34	12	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74587341--74587426	44	2.0	44	97	0	163	25	13	17	43	1.86
74587684--74587719	18	2.0	18	89	10	56	69	8	11	11	1.37
74592600--74592865	46	5.6	48	74	11	189	25	28	18	28	1.98
74610691--74610740	20	2.6	19	76	17	57	14	28	22	36	1.92
74629812--74629884	36	2.0	36	89	0	110	24	6	27	41	1.80
74636043--74636104	29	2.1	29	100	0	124	37	8	24	30	1.84
74638203--74638250	21	2.3	21	96	0	87	25	39	18	16	1.91
74641956--74641993	17	2.2	17	86	9	51	26	0	10	63	1.27
74646704--74646928	80	2.8	79	80	7	224	25	20	27	26	1.99
74646757--74646926	40	4.3	39	83	3	178	25	21	27	25	1.99
74653959--74654130	79	2.2	79	84	3	220	25	21	27	25	1.99
74653906--74654128	40	5.6	39	81	8	209	25	21	27	25	1.99
74653986--74654163	79	2.2	80	80	3	191	25	21	28	24	1.99
74656268--74656310	21	2.0	21	100	0	86	41	9	4	44	1.57
74660660--74660708	23	2.1	23	100	0	98	38	12	14	34	1.83
74660740--74660771	9	3.6	9	100	0	64	78	9	0	12	0.97
74665099--74665147	23	2.1	23	100	0	98	38	12	14	34	1.83
74665225--74665256	9	3.6	9	100	0	64	78	9	0	12	0.97
74672303--74672337	14	2.5	14	90	0	52	54	0	0	45	0.99
74672324--74672366	18	2.4	18	80	0	50	39	2	4	53	1.34
74679753--74679906	43	3.6	43	77	7	136	34	25	11	28	1.91
74682736--74682892	79	2.0	80	82	6	194	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74682708--74682892	40	4.7	40	82	8	173	26	27	21	24	1.99
74688803--74688938	66	2.1	66	92	0	227	17	24	33	25	1.97
74689765--74689797	17	1.9	17	100	0	66	69	12	6	12	1.35
74690433--74690590	43	3.7	43	77	2	165	33	22	15	28	1.94
74690710--74690779	35	2.0	35	83	5	88	48	12	5	32	1.65
74692755--74692793	17	2.2	18	90	4	62	38	7	7	46	1.61
74702666--74702709	23	1.9	23	81	9	54	31	11	4	52	1.57
74710842--74710917	3	25.3	3	100	0	152	67	0	32	0	0.91
74717714--74717811	6	16.3	6	80	0	106	74	6	4	15	1.17
74717714--74717811	18	5.4	18	85	2	126	74	6	4	15	1.17
74719384--74719410	3	9.0	3	100	0	54	66	0	0	33	0.92
74728004--74728035	13	2.5	13	94	0	55	18	25	34	21	1.96
74730084--74730139	27	2.1	27	93	0	94	57	8	1	32	1.40
74734997--74735181	79	2.3	81	83	7	227	24	22	27	24	2.00
74734998--74735181	40	4.6	40	82	9	207	25	22	27	24	2.00
74735050--74735214	79	2.1	79	83	6	201	26	21	27	24	1.99
74742937--74743119	78	2.3	81	81	9	216	25	22	27	24	2.00
74742936--74743119	40	4.7	40	82	8	216	25	22	27	25	2.00
74742989--74743152	80	2.1	77	82	7	188	26	21	26	25	1.99
74759183--74759367	79	2.3	81	83	7	227	24	22	27	24	2.00
74759184--74759367	40	4.6	40	82	9	207	25	22	27	24	2.00
74759236--74759400	79	2.1	79	83	6	201	26	21	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74764737--74764877	70	2.0	70	98	0	273	39	24	12	24	1.89
74767567--74767678	24	4.7	24	88	0	161	18	13	30	37	1.89
74769058--74769150	27	3.4	27	82	10	109	37	22	23	16	1.93
74776010--74776041	15	2.1	15	100	0	64	37	0	25	37	1.56
74781267--74781314	24	2.0	24	100	0	96	29	16	12	41	1.85
74784961--74785007	19	2.3	20	82	10	60	36	0	14	48	1.44
74785355--74785588	101	2.3	100	80	3	265	28	15	24	31	1.96
74785355--74785638	50	5.7	50	77	3	257	28	15	24	30	1.96
74785357--74785645	151	1.9	151	89	0	443	28	16	24	31	1.96
74785849--74785880	16	2.0	16	93	0	55	46	0	18	34	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318