genome.fa.s5.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  131  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40555544--40555635	39	2.3	40	83	7	107	36	17	17	28	1.92
40555681--40555868	40	4.7	40	75	11	172	28	22	19	29	1.98
40556167--40556286	7	17.0	7	70	7	64	20	0	37	41	1.58
40556393--40556425	14	2.4	14	89	0	57	18	0	33	48	1.48
40556445--40556477	15	2.3	15	89	5	50	21	0	30	48	1.50
40558869--40559053	79	2.3	80	81	7	207	24	27	22	24	2.00
40558869--40559053	40	4.7	40	81	6	207	24	27	22	24	2.00
40562095--40562136	14	3.1	14	90	10	61	21	2	4	71	1.16
40562496--40562726	43	5.4	42	72	12	148	25	12	28	33	1.93
40562535--40562726	86	2.2	86	80	4	226	25	12	28	34	1.92
40564405--40564437	12	2.8	12	100	0	66	66	0	9	24	1.20
40565346--40565405	10	6.0	10	83	11	70	68	1	6	23	1.22
40565346--40565403	30	1.9	30	86	13	84	68	1	6	22	1.22
40567378--40567487	53	2.1	53	96	0	202	31	17	13	37	1.89
40575800--40575847	20	2.4	19	86	13	62	45	0	20	33	1.52
40576277--40576324	5	9.6	5	90	0	69	41	0	16	41	1.48
40576680--40576731	22	2.3	23	75	15	56	36	1	21	40	1.64
40582854--40582884	15	2.1	15	93	0	53	83	0	3	12	0.75
40586871--40587052	79	2.3	81	83	7	230	24	21	28	26	1.99
40586871--40587054	40	4.6	40	81	9	207	23	21	28	26	1.99
40586871--40587077	79	2.6	79	78	12	228	25	20	27	26	1.99
40592456--40592496	16	2.6	15	85	11	55	19	0	2	78	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40594027--40594057	13	2.4	13	94	0	53	9	0	16	74	1.07
40599734--40599831	19	5.2	19	87	7	137	35	11	17	35	1.85
40599734--40599831	36	2.6	37	87	9	135	35	11	17	35	1.85
40607906--40608434	78	6.8	77	86	4	686	33	18	21	26	1.97
40608374--40608641	45	5.9	45	75	6	247	31	14	27	26	1.95
40608465--40608633	89	1.9	89	87	0	248	29	13	30	26	1.94
40608374--40608641	134	2.0	136	79	5	292	31	14	27	26	1.95
40609004--40609063	17	3.2	19	86	13	88	38	10	16	35	1.82
40611595--40611625	8	3.8	8	91	8	53	0	16	0	83	0.64
40621577--40621619	13	3.4	13	90	6	70	6	0	16	76	0.99
40621772--40621824	26	2.0	26	100	0	106	47	15	15	22	1.82
40624333--40624370	14	2.7	15	84	8	53	44	0	0	55	0.99
40627527--40627616	24	3.9	23	73	17	87	63	7	1	27	1.29
40627528--40627663	46	3.0	44	82	6	148	63	6	2	26	1.33
40627630--40627686	25	2.3	25	87	6	80	66	0	1	31	1.02
40627759--40627835	27	2.8	28	81	15	97	63	0	5	31	1.16
40627767--40627835	27	2.4	30	86	11	101	63	0	4	31	1.14
40629393--40629512	46	2.7	46	78	8	131	28	24	18	29	1.98
40629394--40629914	44	11.8	42	73	13	225	27	22	18	31	1.97
40629483--40629549	33	2.0	33	94	0	116	29	26	17	25	1.98
40629361--40629683	167	1.9	168	89	0	495	28	21	18	31	1.97
40629742--40629915	45	3.9	45	88	1	224	25	22	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40630312--40630411	46	2.2	46	85	3	130	25	25	14	36	1.93
40630329--40630440	46	2.4	46	81	0	125	26	21	19	32	1.97
40630771--40630849	39	2.0	39	100	0	158	39	15	7	37	1.76
40630894--40631050	53	3.0	53	95	0	269	52	7	16	23	1.68
40630898--40631040	26	5.4	26	63	22	73	53	6	16	23	1.66
40634521--40634582	13	4.5	13	82	9	61	38	46	0	14	1.45
40634522--40634552	8	3.9	8	100	0	62	38	51	0	9	1.35
40640966--40641063	17	5.4	17	65	13	61	30	4	15	50	1.63
40640961--40641069	37	2.9	37	97	0	209	31	4	16	47	1.67
40640983--40641046	20	3.3	20	65	12	62	31	6	17	45	1.73
40641069--40641119	9	5.7	9	88	0	75	29	9	13	47	1.75
40641069--40641119	18	2.8	18	90	0	84	29	9	13	47	1.75
40642759--40642811	26	2.0	26	82	13	65	26	15	22	35	1.93
40644297--40644352	26	2.2	26	100	0	112	35	26	7	30	1.83
40649805--40649857	26	2.0	26	82	13	65	26	9	22	41	1.84
40651343--40651398	26	2.2	26	100	0	112	35	26	7	30	1.83
40651982--40652026	19	2.3	20	88	7	67	42	13	22	22	1.88
40653975--40654064	24	3.9	23	73	17	87	63	7	1	27	1.29
40653976--40654064	46	2.0	44	88	4	133	64	7	1	26	1.28
40654070--40654126	28	2.0	28	86	0	78	61	3	7	28	1.39
40654032--40654134	24	4.2	24	67	20	61	62	3	3	30	1.31
40658967--40659094	48	2.7	47	84	8	154	23	28	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40660722--40660756	16	2.1	17	89	5	54	31	17	5	45	1.71
40668089--40668247	22	7.0	22	72	9	122	20	23	18	37	1.94
40668076--40668247	47	3.7	47	89	2	269	20	23	18	37	1.94
40670780--40670806	13	2.1	13	100	0	54	74	0	25	0	0.83
40675802--40675831	3	9.7	3	92	7	51	33	3	0	63	1.11
40690922--40690953	16	2.0	16	100	0	64	25	25	12	37	1.91
40694004--40694048	17	2.6	17	89	0	72	40	20	15	24	1.91
40695327--40695369	21	2.0	21	82	8	52	58	6	9	25	1.54
40695428--40695490	26	2.4	26	84	5	74	57	3	6	33	1.40
40700189--40700296	26	4.2	26	96	0	189	36	23	5	35	1.78
40704465--40704517	26	2.0	26	82	7	63	24	15	20	39	1.91
40706002--40706083	26	3.2	26	94	0	137	35	21	6	36	1.79
40711766--40711813	21	2.2	23	88	7	73	56	4	0	39	1.19
40711802--40712009	98	2.1	98	93	4	357	52	6	9	31	1.58
40716425--40716465	17	2.3	18	83	4	57	41	17	12	29	1.85
40716425--40716518	18	5.3	18	70	11	68	36	14	13	35	1.86
40717474--40717517	16	2.7	16	85	3	52	6	18	0	75	1.02
40730856--40730910	27	2.0	27	100	0	110	60	3	3	32	1.32
40730847--40730919	9	7.8	9	75	16	60	58	4	2	34	1.31
40732469--40732504	16	2.2	16	90	9	56	19	2	0	77	0.88
40732628--40732713	41	2.0	41	82	12	104	54	6	2	36	1.40
40735518--40735575	19	2.8	19	80	14	71	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40738642--40738693	20	2.7	20	81	18	65	30	0	7	61	1.24
40740497--40740597	29	3.5	29	91	1	159	29	29	14	25	1.95
40742223--40742267	23	2.0	23	82	8	56	26	11	8	53	1.65
40752609--40752654	20	2.2	22	84	7	60	28	43	0	28	1.55
40758843--40758914	25	2.9	25	81	8	83	55	5	8	30	1.52
40759228--40759254	11	2.5	11	100	0	54	25	7	0	66	1.17
40759292--40759353	30	2.0	31	90	3	99	29	3	9	58	1.46
40759656--40759748	27	3.4	27	71	11	73	63	6	4	25	1.37
40761079--40761128	26	2.0	26	92	4	84	14	2	36	48	1.55
40768945--40768992	19	2.6	19	86	3	71	35	2	14	47	1.56
40769009--40769097	42	2.1	42	93	0	151	26	5	14	52	1.64
40770189--40770241	11	4.8	11	80	0	52	64	5	11	18	1.46
40771686--40771979	49	5.9	49	81	1	345	26	18	25	29	1.98
40776405--40776441	19	1.9	19	88	0	56	64	18	0	16	1.29
40776454--40776530	40	1.9	39	84	10	102	61	6	3	28	1.39
40776674--40776699	11	2.4	11	100	0	52	7	0	7	84	0.77
40776995--40777021	14	1.9	14	100	0	54	55	0	14	29	1.40
40783267--40783386	61	2.0	61	98	0	231	40	17	10	32	1.83
40791601--40791645	19	2.5	19	85	7	58	64	11	11	13	1.50
40794474--40794502	14	2.0	15	93	6	51	31	0	0	68	0.89
40795278--40795336	25	2.2	25	82	8	64	44	1	0	54	1.10
40795417--40795455	17	2.3	17	90	0	60	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40795360--40795453	9	10.3	9	69	13	59	34	2	1	62	1.14
40796524--40796567	21	2.1	21	82	0	52	36	25	0	38	1.56
40796725--40796843	52	2.2	54	89	4	179	28	3	4	63	1.29
40797776--40797807	7	4.6	7	100	0	64	28	0	12	59	1.34
40798858--40798917	27	2.2	26	82	5	66	41	0	3	55	1.16
40798877--40798941	33	2.0	31	82	14	78	36	1	3	58	1.23
40802419--40802473	24	2.3	24	93	0	92	34	25	10	29	1.90
40802547--40802581	17	2.0	18	88	5	54	42	14	5	37	1.69
40802702--40802731	14	2.1	14	100	0	60	33	6	13	46	1.69
40804644--40804691	25	2.0	24	84	12	62	43	12	14	29	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318