genome.fa.s5.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  193  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60742823--60743089	30	8.9	30	69	18	127	30	4	1	63	1.24
60742864--60742958	20	4.8	20	83	8	122	27	3	1	68	1.11
60742855--60742946	39	2.4	39	83	7	118	27	1	2	69	1.07
60742890--60743141	12	22.0	12	64	24	57	32	4	1	61	1.24
60742982--60743017	17	2.1	17	89	0	54	33	2	2	61	1.25
60742824--60743135	19	16.0	20	66	24	111	31	4	1	63	1.23
60743039--60743140	26	3.8	26	76	15	93	35	0	1	61	1.14
60742823--60743141	28	11.1	28	70	23	150	31	4	1	62	1.24
60743040--60743125	14	5.5	16	77	17	67	34	1	1	62	1.10
60750327--60750376	25	2.0	25	96	0	91	28	16	2	54	1.53
60754858--60754900	22	1.9	23	85	4	61	25	4	0	69	1.07
60755227--60755487	20	12.9	20	66	23	120	30	4	1	63	1.22
60755186--60755326	58	2.4	61	83	10	184	28	2	2	65	1.20
60755186--60755488	19	15.6	19	67	19	146	30	4	1	63	1.23
60755230--60755355	10	11.7	11	71	25	51	28	4	1	65	1.22
60755332--60755366	12	2.8	12	91	4	52	34	8	0	57	1.29
60755345--60755380	17	2.1	17	89	0	54	33	2	2	61	1.25
60755407--60755504	12	8.3	12	72	22	66	36	1	1	61	1.10
60755403--60755492	29	3.4	25	78	17	78	35	1	0	63	1.02
60755402--60755503	40	2.6	39	81	10	102	35	0	0	62	1.08
60768488--60768637	44	3.4	44	83	0	176	30	14	24	32	1.94
60768782--60768880	44	2.4	42	81	10	105	32	12	27	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60768302--60768880	308	1.9	308	88	4	873	31	15	23	29	1.96
60768797--60768880	44	1.9	44	87	0	123	29	13	27	29	1.94
60770573--60770863	12	24.3	12	65	20	64	30	4	1	63	1.23
60770566--60770702	56	2.4	55	79	16	145	29	2	0	66	1.11
60770565--60770853	58	4.9	57	71	20	174	30	4	1	63	1.23
60770557--60770753	19	11.1	18	69	22	91	30	4	1	63	1.21
60770565--60770863	38	8.1	38	69	18	125	31	4	1	63	1.23
60770711--60770746	17	2.1	17	89	0	54	33	2	2	61	1.25
60770795--60770857	21	3.0	21	77	13	76	31	0	3	65	1.09
60770768--60770869	40	2.5	42	81	13	124	33	0	3	61	1.21
60781387--60781420	17	2.1	16	88	5	50	26	44	2	26	1.69
60792399--60792480	39	2.1	39	97	0	155	24	32	23	19	1.97
60794295--60794331	15	2.4	15	95	4	65	51	0	8	40	1.32
60800456--60800514	29	2.0	31	80	12	70	40	0	18	40	1.51
60806353--60806431	37	2.1	37	83	4	97	24	29	20	26	1.99
60806554--60807090	47	11.4	47	93	0	867	29	29	8	32	1.87
60810987--60811065	29	2.7	29	86	5	106	27	32	15	24	1.95
60811047--60811149	43	2.4	43	100	0	206	26	35	15	22	1.94
60813015--60813093	37	2.1	37	88	4	115	25	30	18	25	1.98
60813263--60813773	47	10.9	47	96	0	887	29	29	9	31	1.88
60816678--60816710	17	1.9	17	88	11	50	24	3	24	48	1.65
60826244--60826275	14	2.4	13	90	10	55	62	12	6	18	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60827892--60828154	119	2.2	121	83	8	333	25	27	21	25	1.99
60827871--60828154	40	7.1	40	85	5	337	25	27	21	25	1.99
60836074--60836296	119	1.9	120	85	6	310	25	27	22	24	2.00
60836053--60836296	40	6.1	40	85	6	300	25	27	22	24	2.00
60841205--60841243	18	2.2	18	86	9	53	66	0	7	25	1.18
60841977--60842017	17	2.4	17	83	0	55	46	17	17	19	1.85
60843763--60843859	27	3.6	27	87	2	131	25	14	29	29	1.95
60845626--60845761	57	2.4	57	80	4	141	34	16	19	30	1.93
60846140--60846168	14	2.1	14	100	0	58	34	13	20	31	1.92
60846926--60847024	30	3.3	30	95	0	171	18	20	36	25	1.95
60846967--60847016	15	3.3	15	72	10	57	14	14	38	34	1.85
60858771--60858935	47	3.5	47	91	0	258	32	8	31	27	1.87
60859054--60859132	37	2.1	37	88	0	113	24	17	31	26	1.97
60860775--60860813	21	1.9	21	89	5	62	23	30	35	10	1.88
60862036--60862157	48	2.5	48	85	0	145	24	27	20	27	1.99
60862075--60862167	48	1.9	48	86	0	132	26	24	19	29	1.98
60868388--60868422	18	1.9	18	88	0	52	5	28	11	54	1.59
60872094--60872119	9	2.9	9	100	0	52	46	19	0	34	1.50
60878427--60878551	49	2.6	49	88	2	171	22	29	20	27	1.99
60880041--60880098	23	2.5	21	76	20	53	58	6	0	34	1.25
60881494--60881568	33	2.3	33	97	0	141	50	22	6	20	1.71
60884946--60885025	37	2.2	37	84	4	108	28	28	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60885144--60885732	47	12.4	47	94	1	971	29	29	8	32	1.87
60885144--60885732	143	4.1	141	92	2	971	29	29	8	32	1.87
60885144--60885728	239	2.5	239	95	0	1030	29	29	8	32	1.87
60888425--60888472	20	2.4	20	92	0	78	39	14	16	29	1.88
60903306--60903339	18	1.9	18	88	5	52	29	17	11	41	1.85
60904599--60904673	28	2.7	28	87	0	105	26	32	14	26	1.95
60904885--60904920	16	2.2	16	95	0	63	11	22	16	50	1.77
60905177--60905216	21	1.9	21	84	0	53	35	25	10	30	1.88
60914725--60914779	27	2.0	27	96	0	101	49	27	3	20	1.65
60921151--60921267	61	1.9	61	82	0	144	34	15	8	41	1.77
60921594--60921628	18	1.9	18	88	0	52	65	5	0	28	1.15
60930212--60930473	39	6.7	40	87	7	328	24	27	22	25	2.00
60938219--60938480	39	6.7	40	88	7	337	24	27	22	25	2.00
60940286--60940457	79	2.2	79	82	3	211	24	21	28	25	1.99
60940233--60940455	40	5.6	39	80	8	200	25	21	27	25	1.99
60940313--60940490	79	2.2	80	81	2	198	24	21	28	24	1.99
60948206--60948377	79	2.2	79	82	3	211	24	21	28	25	1.99
60948153--60948375	40	5.6	39	80	8	200	25	21	27	25	1.99
60948233--60948410	79	2.2	80	81	2	198	24	21	28	24	1.99
60970546--60970717	93	1.8	93	95	2	310	28	29	20	20	1.98
60970539--60970714	46	3.8	46	79	14	209	29	29	20	20	1.98
60972734--60972956	39	5.7	40	85	8	266	26	21	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60972734--60972956	79	2.8	81	84	9	282	26	21	27	24	2.00
60980686--60980908	39	5.7	40	85	8	266	25	22	27	24	2.00
60980686--60980908	79	2.8	81	84	9	282	25	22	27	24	2.00
60980686--60980941	79	3.3	79	81	10	217	26	21	27	24	1.99
60988439--60988506	29	2.3	29	82	5	84	27	29	13	29	1.94
60988613--60988680	29	2.3	29	85	5	93	27	30	13	27	1.94
60988782--60988860	29	2.7	30	82	13	110	29	30	15	25	1.96
60988328--60988829	174	2.9	174	97	0	950	31	24	14	29	1.95
60991565--60991979	47	8.7	47	92	2	661	32	8	29	28	1.88
60991612--60991690	25	3.3	25	61	10	65	32	5	29	32	1.79
60992098--60992176	37	2.1	37	90	0	122	24	18	31	25	1.98
60993578--60993764	48	3.9	48	85	2	259	26	32	17	22	1.97
60995592--60995632	14	3.0	13	86	10	55	26	2	0	70	0.99
60999980--61000155	46	3.8	46	80	10	214	21	21	28	28	1.99
60999976--61000147	93	1.8	93	93	0	299	21	22	29	27	1.99
61011158--61011196	21	1.9	20	84	5	51	30	2	20	46	1.64
61014533--61014685	28	5.5	28	89	1	220	25	14	28	31	1.95
61014533--61014685	83	1.8	83	87	2	227	25	14	28	31	1.95
61019156--61019185	12	2.5	12	94	0	51	30	40	23	6	1.80
61021658--61021717	19	3.1	18	81	13	66	50	15	18	16	1.79
61022031--61022105	20	4.0	18	71	20	55	46	1	5	46	1.33
61028980--61029011	17	1.9	16	93	6	55	53	0	28	18	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61030821--61030845	13	1.9	13	100	0	50	36	16	16	32	1.90
61034909--61034994	45	1.9	45	97	0	163	36	23	13	26	1.93
61035624--61035669	20	2.2	21	96	3	85	39	13	8	39	1.75
61053874--61053925	18	2.8	19	72	16	56	30	5	17	46	1.71
61057799--61057874	37	2.1	37	83	14	95	26	7	22	43	1.80
61064168--61064393	40	5.7	40	90	4	291	26	21	26	25	1.99
61064179--61064426	80	3.1	79	84	8	272	27	20	25	25	1.99
61067787--61068004	64	3.4	65	86	3	228	24	29	15	30	1.96
61067859--61068004	64	2.3	64	93	0	256	26	28	15	30	1.95
61068739--61068799	30	2.0	30	83	0	77	31	24	4	39	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318