genome.fa.s5.2.7.7.80.10.50.1000.211.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  211  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66654483--66654541	25	2.5	24	78	10	68	33	8	6	50	1.59
66654499--66654547	25	2.0	25	91	0	80	34	8	6	51	1.57
66654698--66654745	16	3.1	15	90	6	69	31	2	2	64	1.16
66654698--66654749	8	6.5	8	82	8	61	30	1	1	65	1.14
66657017--66657053	15	2.5	15	95	0	65	16	45	0	37	1.47
66658084--66658145	31	1.9	33	84	12	85	58	1	0	40	1.08
66659529--66659576	18	2.6	17	75	12	51	72	12	0	14	1.11
66672132--66672168	3	12.3	3	100	0	74	32	0	0	67	0.91
66677170--66677293	63	2.0	63	90	3	196	27	12	21	37	1.90
66686427--66686469	4	10.8	4	89	0	68	30	0	20	48	1.50
66694560--66694585	13	2.0	13	100	0	52	15	38	30	15	1.88
66695340--66695374	18	1.9	18	88	0	52	42	2	34	20	1.66
66700680--66701375	96	7.3	96	92	3	1102	29	28	8	33	1.87
66700680--66701375	47	14.6	47	91	4	1072	29	28	8	33	1.87
66704736--66704785	24	2.0	25	81	11	59	28	34	8	30	1.86
66704962--66705143	40	4.6	40	86	0	256	25	26	21	25	2.00
66704962--66705143	80	2.3	80	91	0	283	25	26	21	25	2.00
66705128--66705159	16	2.0	16	100	0	64	18	25	31	25	1.98
66705048--66705239	96	2.0	96	97	0	366	25	25	22	26	2.00
66705144--66705365	40	5.6	40	90	0	347	25	27	22	25	2.00
66704980--66705319	176	1.9	176	92	0	563	26	26	22	25	2.00
66704962--66705359	216	1.8	216	90	2	638	25	26	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66707616--66708377	47	15.6	47	79	14	645	29	28	8	32	1.87
66707809--66707935	69	1.9	67	100	0	227	30	28	7	33	1.86
66707856--66707902	22	2.1	22	100	0	94	36	27	0	36	1.57
66707878--66708377	143	3.5	143	93	2	864	30	29	8	32	1.86
66707878--66708377	96	5.2	94	92	3	829	30	29	8	32	1.86
66710986--66711105	51	2.4	51	94	0	204	29	23	20	26	1.99
66713840--66714055	46	4.7	45	73	12	147	27	20	27	24	1.99
66720006--66720645	47	13.5	47	91	2	896	28	29	9	32	1.88
66721914--66722091	85	2.1	84	97	1	338	26	28	8	37	1.85
66723347--66723698	40	8.8	40	90	0	506	25	26	21	25	1.99
66723761--66723835	38	2.0	38	86	5	107	24	26	18	30	1.98
66726266--66726862	47	12.6	47	91	2	860	28	29	8	33	1.87
66726266--66726862	96	6.3	94	92	2	860	28	29	8	33	1.87
66728126--66728304	85	2.1	85	97	0	340	26	27	7	37	1.84
66732462--66732584	39	3.1	39	82	5	133	31	29	21	17	1.96
66732657--66732738	28	2.9	28	83	0	101	29	24	10	35	1.90
66748167--66748279	49	2.4	49	81	8	128	23	28	22	25	1.99
66757307--66757412	55	1.9	55	81	11	128	15	28	31	25	1.95
66761207--66761284	41	1.9	41	100	0	156	33	10	20	35	1.86
66761388--66761429	21	2.0	21	100	0	84	23	14	28	33	1.94
66765611--66765878	46	5.7	45	74	11	186	28	19	28	23	1.98
66765616--66765878	137	1.9	140	83	7	345	28	19	28	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66770041--66770333	50	5.8	50	83	4	358	31	25	17	25	1.97
66770052--66770333	101	2.8	100	83	2	359	32	25	16	25	1.96
66772971--66773093	27	4.5	27	87	2	147	25	16	29	29	1.96
66772971--66773093	55	2.3	54	85	1	156	25	16	29	29	1.96
66775863--66775893	14	2.1	15	94	5	55	29	6	6	58	1.48
66783129--66783161	16	2.1	16	88	5	50	48	0	45	6	1.27
66784479--66784567	44	2.0	45	93	2	153	29	5	21	43	1.75
66788003--66788091	39	2.3	39	86	0	124	33	29	1	35	1.65
66791151--66791183	17	1.9	17	88	11	50	54	3	9	33	1.47
66791416--66791450	16	2.2	16	90	5	54	31	11	8	48	1.69
66791996--66792051	15	3.7	15	92	0	94	10	7	17	64	1.47
66792261--66792348	30	3.0	28	75	17	79	40	2	21	35	1.66
66792276--66792363	31	3.0	28	75	11	77	40	4	22	31	1.74
66792620--66793958	77	16.8	80	72	15	717	33	18	17	30	1.94
66792932--66793520	166	3.6	165	85	5	712	35	18	17	27	1.94
66793272--66793442	88	1.9	88	83	2	218	36	18	16	28	1.93
66793229--66793833	243	2.5	241	81	7	675	34	19	17	29	1.94
66793422--66793762	168	2.0	165	85	4	452	34	18	17	29	1.93
66793602--66793963	74	5.0	72	87	4	460	32	19	16	32	1.94
66793602--66793973	142	2.6	143	84	6	471	32	18	16	31	1.94
66793950--66793994	20	2.2	21	96	4	83	44	4	11	40	1.60
66793820--66794141	178	1.8	174	89	5	504	35	15	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66793994--66794220	72	3.1	72	88	6	334	34	16	16	32	1.92
66801365--66801414	24	2.1	24	88	7	75	44	10	22	24	1.83
66814812--66814917	55	1.9	55	81	11	128	15	28	31	25	1.95
66818705--66818782	41	1.9	41	100	0	156	33	10	20	35	1.86
66818886--66818927	21	2.0	21	100	0	84	23	14	28	33	1.94
66823085--66823352	46	5.7	45	74	11	186	28	19	28	23	1.98
66823090--66823352	137	1.9	140	83	7	345	28	19	28	23	1.98
66827504--66827628	48	2.6	48	84	12	154	35	25	15	24	1.94
66829940--66830027	25	3.4	26	81	10	92	22	13	30	32	1.93
66829960--66830027	27	2.6	26	86	4	84	25	14	29	30	1.95
66832760--66832790	14	2.1	15	94	5	55	29	6	6	58	1.48
66840041--66840073	16	2.1	16	88	5	50	48	0	45	6	1.27
66841410--66841499	45	2.0	45	95	0	162	28	5	21	44	1.74
66844955--66845043	39	2.3	39	86	0	124	33	29	1	35	1.65
66848107--66848139	17	1.9	17	88	11	50	54	3	9	33	1.47
66848370--66848404	16	2.2	16	90	5	54	31	11	8	48	1.69
66848950--66849000	14	3.7	14	92	2	86	11	7	19	60	1.55
66849208--66849295	30	3.0	28	75	17	79	40	2	21	35	1.66
66849223--66849310	31	3.0	28	75	11	77	40	4	22	31	1.74
66849566--66850912	79	16.8	80	72	14	739	33	18	17	30	1.94
66849878--66850472	166	3.6	166	86	3	761	36	18	17	27	1.93
66850220--66850393	90	1.9	90	83	2	224	35	17	16	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66850373--66850696	169	1.9	167	86	4	454	32	19	17	30	1.95
66850554--66850917	72	5.0	72	88	2	478	32	18	16	32	1.94
66850904--66850948	20	2.2	21	96	4	83	44	4	11	40	1.60
66850772--66851095	178	1.8	176	90	4	526	35	15	16	32	1.90
66850948--66851174	72	3.1	72	88	6	334	34	16	16	32	1.92
66850705--66851167	250	1.9	249	93	3	797	34	16	16	32	1.91
66858500--66858549	24	2.1	24	88	7	75	44	10	22	24	1.83
66861297--66861488	40	4.8	40	89	3	280	26	28	22	22	1.99
66864360--66864402	17	2.5	17	88	0	68	53	2	9	34	1.46
66864621--66864654	16	2.2	16	89	5	52	29	11	8	50	1.69
66865184--66865233	15	3.5	14	78	10	57	8	2	14	76	1.10
66865194--66865230	14	2.6	14	91	4	56	10	2	13	72	1.21
66865443--66865549	31	3.6	30	80	12	114	40	3	23	32	1.72
66870902--66871065	27	6.1	27	85	0	175	29	23	7	39	1.83
66870902--66871065	81	2.0	81	86	0	229	29	23	7	39	1.83
66871104--66871229	27	4.7	27	80	3	146	40	23	7	28	1.82
66871104--66871281	27	6.6	27	74	7	139	40	21	8	29	1.83
66871104--66871281	54	3.3	54	80	1	178	40	21	8	29	1.83
66872003--66872050	25	1.9	25	86	0	69	35	22	14	27	1.93
66872102--66872152	20	2.5	20	90	0	75	39	9	19	31	1.84
66872202--66872337	52	2.7	51	92	5	215	27	21	23	27	1.99
66872202--66872337	26	5.3	26	87	3	181	27	21	23	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66872470--66872558	42	2.1	42	87	0	124	32	13	17	35	1.89
66872585--66872723	31	4.5	31	88	3	185	30	18	25	25	1.98
66874968--66875134	54	3.1	54	90	1	255	28	25	7	38	1.84
66874968--66875134	27	6.2	27	87	1	210	28	25	7	38	1.84
66875170--66875347	27	6.6	27	75	8	139	39	23	8	28	1.85
66875190--66875348	81	2.0	81	79	9	173	39	22	8	29	1.84
66881527--66881570	23	1.9	23	81	9	54	38	9	11	40	1.73
66885912--66885973	21	3.0	21	85	4	81	33	12	19	33	1.90
66885912--66885965	11	5.1	11	77	8	67	33	14	20	31	1.93
66893804--66893865	21	3.0	21	85	4	81	33	12	19	33	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318