genome.fa.s5.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  146  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45391767--45391805	18	2.3	18	86	8	55	43	12	5	38	1.65
45391962--45391992	15	2.1	15	100	0	62	22	32	6	38	1.80
45395354--45395383	15	2.0	15	93	0	51	23	46	6	23	1.75
45396125--45396163	18	2.3	18	86	8	55	43	12	5	38	1.65
45396320--45396350	15	2.1	15	100	0	62	22	32	6	38	1.80
45397060--45397085	13	2.0	13	100	0	52	15	30	15	38	1.88
45399967--45399992	13	2.0	13	100	0	52	15	30	15	38	1.88
45400257--45400291	5	7.2	5	93	6	63	22	0	0	77	0.78
45406431--45406504	36	2.0	37	92	5	123	27	14	10	47	1.78
45408068--45408110	16	2.7	15	89	7	59	41	13	2	41	1.57
45409635--45409684	20	2.5	20	93	0	82	10	26	44	20	1.82
45410710--45410902	93	2.1	94	97	1	370	44	17	8	29	1.79
45414329--45414410	41	2.0	41	92	0	137	29	10	9	50	1.70
45415064--45415090	13	2.1	13	100	0	54	29	0	0	70	0.88
45415217--45415279	30	2.1	30	91	5	101	58	11	4	25	1.51
45417413--45417493	32	2.5	32	90	4	128	27	1	19	51	1.54
45418583--45418659	24	3.3	23	71	20	63	29	9	20	40	1.83
45418577--45418664	46	1.9	46	92	0	149	30	9	19	40	1.82
45418577--45418676	46	2.2	46	88	0	146	31	10	19	40	1.84
45422583--45422614	6	5.2	6	96	3	55	0	62	0	37	0.95
45422689--45422738	25	2.0	25	88	0	73	4	34	4	58	1.36
45425735--45425777	18	2.4	18	96	0	77	51	0	2	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45425855--45425891	19	1.9	19	100	0	74	48	5	10	35	1.61
45425882--45425919	14	2.7	14	91	0	58	34	18	10	36	1.85
45432219--45432262	6	7.2	6	84	5	61	45	15	20	18	1.85
45432242--45432352	45	2.5	45	79	5	127	40	17	18	23	1.91
45432560--45432646	40	2.2	40	87	0	120	40	16	10	33	1.82
45433451--45433492	18	2.3	18	87	0	66	52	0	0	47	1.00
45433456--45433492	15	2.5	15	100	0	74	51	0	0	48	1.00
45433651--45433699	23	2.1	23	84	0	62	51	8	4	36	1.51
45433739--45433811	3	24.7	3	72	18	55	56	5	0	38	1.23
45433737--45433811	20	3.8	20	79	13	68	54	5	0	40	1.23
45433740--45433820	26	3.0	27	83	13	89	55	6	0	38	1.25
45436372--45436396	13	1.9	13	100	0	50	52	16	8	24	1.70
45443401--45443535	39	3.4	38	73	10	94	28	26	20	24	1.99
45445248--45445273	8	3.2	8	100	0	52	50	0	0	50	1.00
45445414--45445479	21	3.2	20	72	23	64	54	4	0	40	1.21
45449700--45449739	21	1.9	21	85	10	55	32	7	10	50	1.64
45449974--45450201	107	2.1	108	88	4	336	36	16	11	35	1.84
45450770--45450813	21	2.1	21	82	0	52	34	25	2	38	1.68
45454113--45454137	7	3.6	7	100	0	50	28	0	12	60	1.32
45457979--45458035	30	1.9	30	88	0	87	12	24	35	28	1.91
45459596--45460098	251	2.0	251	89	0	772	28	16	17	38	1.91
45459600--45460103	126	4.0	126	90	0	740	27	16	17	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45460148--45460245	30	3.1	29	75	16	88	44	17	0	37	1.49
45460205--45460408	66	3.3	60	81	14	208	42	20	0	35	1.59
45460243--45460297	23	2.3	24	84	6	67	40	23	0	36	1.55
45460250--45460461	32	7.2	29	70	21	124	42	23	0	33	1.60
45460259--45460402	32	4.6	32	75	13	129	43	20	1	34	1.61
45460184--45460360	86	2.1	85	79	12	193	41	21	1	35	1.61
45460259--45460408	66	2.4	61	88	9	214	42	22	1	34	1.62
45460389--45460468	22	3.3	23	80	14	90	42	20	0	37	1.52
45465210--45465326	62	1.9	61	86	5	166	49	4	3	42	1.39
45465305--45465353	20	2.7	18	77	22	57	51	4	2	42	1.32
45465677--45465865	94	2.0	94	93	0	324	35	14	5	43	1.70
45467524--45467643	57	2.1	58	85	1	161	48	5	17	28	1.70
45468946--45468996	21	2.4	21	86	0	66	39	15	27	17	1.90
45476746--45476777	15	2.1	15	100	0	64	18	12	28	40	1.87
45479682--45479723	23	1.9	21	85	9	57	35	30	0	33	1.58
45480176--45480219	19	2.2	21	88	8	65	43	15	27	13	1.85
45483419--45483453	18	1.9	18	88	0	52	42	2	5	48	1.41
45488020--45488062	23	1.9	22	85	4	59	34	2	4	58	1.32
45489026--45489106	41	2.0	42	97	2	155	65	6	4	23	1.35
45489033--45489100	22	3.2	22	68	19	72	63	5	5	25	1.40
45489713--45489740	6	4.7	6	100	0	56	14	0	0	85	0.59
45492742--45492808	29	2.3	29	97	0	125	23	37	22	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45493521--45493790	105	2.6	105	91	3	427	25	21	17	35	1.95
45497640--45497793	56	2.8	56	88	0	245	32	7	14	44	1.74
45500521--45500777	39	6.6	39	90	1	390	14	25	22	38	1.91
45504641--45504686	24	1.9	24	86	0	65	36	4	10	47	1.58
45506608--45506653	24	1.9	24	95	0	83	36	2	8	52	1.45
45514274--45514306	5	6.8	5	89	6	50	45	0	0	54	0.99
45514274--45514303	9	3.2	9	95	4	51	46	0	0	53	1.00
45514277--45514306	14	2.1	14	93	0	51	43	0	0	56	0.99
45514274--45514310	19	1.9	19	88	0	56	45	0	2	51	1.15
45514495--45514519	13	1.9	13	100	0	50	48	12	8	32	1.69
45522904--45522929	13	2.0	13	100	0	52	7	38	30	23	1.83
45524301--45524342	22	1.9	22	90	0	66	19	14	40	26	1.89
45528454--45528638	79	2.3	81	84	7	236	25	27	22	24	2.00
45528454--45528638	40	4.7	40	83	7	234	25	27	22	24	2.00
45548587--45548721	65	2.1	66	87	1	191	22	20	25	31	1.98
45548748--45549043	73	3.9	74	88	6	409	27	18	22	31	1.97
45549118--45549396	54	5.0	54	89	4	391	29	13	17	39	1.88
45549439--45549705	54	4.8	54	87	5	367	29	14	17	38	1.89
45549439--45549705	114	2.4	111	85	7	373	29	14	17	38	1.89
45549118--45549926	309	2.6	308	95	0	1447	28	15	17	39	1.90
45549750--45549913	57	2.9	56	90	3	249	29	14	16	39	1.88
45552064--45552133	9	7.7	9	73	23	58	35	2	8	52	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45555280--45555308	14	2.0	15	93	6	51	68	3	6	20	1.27
45557066--45557517	94	4.8	93	86	2	557	28	21	17	31	1.96
45556960--45557663	144	4.9	143	70	12	503	28	21	17	31	1.96
45557283--45557742	238	1.9	238	84	2	602	28	22	17	31	1.97
45557159--45557742	50	12.3	49	68	18	229	28	22	17	31	1.97
45557541--45557707	44	3.7	44	74	16	160	28	18	20	32	1.96
45557491--45557763	94	2.9	94	81	3	289	28	21	19	30	1.98
45569897--45569939	5	8.6	5	94	0	68	16	0	4	79	0.90
45578102--45578139	5	7.6	5	93	0	67	18	0	2	78	0.86
45583258--45583309	21	2.5	21	100	0	104	28	26	21	23	1.99
45588592--45588633	21	2.0	21	100	0	84	33	28	9	28	1.88
45592906--45593077	93	1.8	93	92	2	292	28	28	20	22	1.99
45592899--45593074	46	3.8	46	77	14	191	29	28	20	21	1.98
45600703--45600760	30	1.9	30	82	10	73	60	10	5	24	1.49
45603343--45603457	57	2.0	57	100	0	230	33	17	26	23	1.96
45604015--45604100	41	2.1	40	82	2	100	63	10	4	20	1.43
45604087--45604151	28	2.3	27	76	7	67	63	0	7	29	1.22
45605447--45605507	18	3.3	18	75	20	72	49	4	3	42	1.40
45605433--45605507	37	2.0	37	100	0	150	52	5	2	40	1.38
45605741--45605789	21	2.3	21	80	13	55	38	2	2	57	1.22
45607825--45608108	142	2.0	142	96	0	523	37	3	20	38	1.71
45610734--45610953	46	4.7	45	79	8	183	21	29	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45610782--45610956	94	1.9	92	85	4	244	21	28	20	29	1.98
45623024--45623068	22	2.0	22	100	0	90	26	26	4	42	1.74
45632022--45632188	43	3.9	42	77	9	153	30	25	16	27	1.97
45648239--45648269	12	2.6	12	100	0	62	12	32	35	19	1.90
45649374--45649530	43	3.7	42	84	9	169	33	26	14	25	1.95
45650089--45650145	27	2.1	27	100	0	114	50	22	3	22	1.64
45651573--45651643	30	2.4	30	82	0	88	15	29	26	28	1.96
45660735--45660766	15	2.1	15	94	0	55	15	6	9	68	1.36
45662516--45662553	20	1.9	20	100	0	76	42	2	10	44	1.52
45663673--45663736	31	2.0	33	82	8	80	34	6	0	59	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318