genome.fa.s5.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  120  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37841622--37841666	17	2.6	17	78	0	63	48	0	0	51	1.00
37842079--37842131	21	2.5	21	100	0	106	32	39	5	22	1.78
37847668--37847716	23	2.1	23	100	0	98	20	6	22	51	1.69
37847777--37847814	18	2.0	18	90	10	58	34	0	0	65	0.93
37850812--37850876	32	2.0	32	100	0	130	30	21	15	32	1.94
37851168--37851210	22	1.9	23	85	4	61	46	13	2	37	1.57
37851194--37851246	19	3.0	17	76	10	61	35	16	7	39	1.78
37856248--37856292	23	2.0	23	91	4	74	46	17	4	31	1.68
37856245--37856302	22	2.6	22	86	7	82	43	20	3	32	1.69
37856274--37856326	19	3.0	17	76	10	61	37	18	7	35	1.80
37859654--37859819	53	3.1	53	87	6	221	25	15	28	30	1.96
37863648--37863695	24	2.0	25	84	8	64	62	0	0	37	0.95
37868347--37868394	10	4.9	9	85	10	51	25	6	0	68	1.12
37869265--37869300	9	3.8	10	92	7	58	27	0	0	72	0.85
37872251--37872507	3	85.7	3	75	6	198	29	7	1	62	1.29
37872597--37872649	11	4.5	12	79	11	65	20	7	0	71	1.10
37875715--37875797	41	2.0	41	100	0	166	33	19	28	18	1.95
37879443--37879492	25	2.0	26	92	7	86	68	0	0	32	0.90
37879458--37879522	21	3.1	21	77	2	69	69	1	0	29	0.98
37884839--37884873	18	1.9	18	94	0	61	31	34	5	28	1.81
37894542--37894737	99	2.0	99	87	4	288	51	12	11	23	1.73
37901924--37901961	19	2.0	20	85	15	53	68	2	7	21	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37901996--37902033	20	1.9	20	84	10	51	63	0	10	26	1.27
37902145--37902243	15	6.3	16	66	15	55	64	2	10	23	1.34
37902898--37902946	24	2.0	24	96	0	89	20	4	48	26	1.67
37902940--37902970	12	2.6	12	100	0	62	9	0	41	48	1.36
37903393--37903625	44	5.3	44	70	10	152	26	22	22	28	1.99
37903277--37903576	133	2.3	133	88	1	431	28	22	21	29	1.99
37903393--37903726	177	1.9	176	90	3	537	26	22	21	29	1.99
37903456--37903726	88	3.1	88	66	18	211	26	21	21	29	1.99
37903788--37904255	44	10.7	42	63	15	119	24	25	22	28	1.99
37903635--37904485	131	6.5	130	88	1	1153	25	24	20	29	1.99
37903635--37904485	263	3.2	262	88	1	1211	25	24	20	29	1.99
37903640--37904483	394	2.1	395	88	0	1242	25	24	20	29	1.99
37905053--37905112	25	2.4	25	88	5	86	30	18	11	40	1.86
37905576--37905619	20	2.3	19	84	4	52	0	11	4	84	0.77
37910064--37910239	50	3.7	50	79	11	188	34	15	21	28	1.94
37910062--37910239	93	1.9	94	84	3	243	34	16	21	28	1.95
37910211--37910295	31	2.7	31	90	0	134	24	20	27	28	1.99
37910321--37910526	42	4.5	46	82	8	181	27	15	26	30	1.96
37910395--37910570	42	3.9	47	86	9	203	29	14	26	29	1.95
37912188--37912225	12	3.2	12	78	14	51	5	18	18	57	1.58
37914630--37914926	3	99.7	3	65	21	83	62	2	8	26	1.37
37914675--37914773	30	3.2	29	74	16	92	62	2	12	23	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37914857--37914922	23	2.9	23	74	12	66	63	0	7	28	1.21
37914858--37914929	20	3.5	20	74	12	65	66	0	6	26	1.16
37914962--37915014	18	2.7	21	83	11	60	60	0	11	28	1.31
37919632--37919671	20	2.0	20	85	0	53	47	0	2	50	1.14
37920660--37920842	94	1.9	96	87	6	275	45	11	15	26	1.80
37923617--37923651	6	5.8	6	86	0	52	14	45	0	40	1.45
37923604--37923651	24	2.0	24	87	0	69	12	41	4	41	1.62
37925907--37925954	20	2.5	19	77	12	53	54	4	2	39	1.32
37926058--37926097	21	2.0	21	85	14	57	60	2	0	37	1.11
37929167--37929263	30	3.2	30	71	8	90	27	15	28	27	1.96
37931120--37931148	9	3.2	9	100	0	58	10	44	0	44	1.38
37931367--37931450	30	2.8	29	75	12	89	13	21	1	64	1.35
37931426--37931457	12	2.7	12	95	0	55	9	15	3	71	1.24
37931521--37931564	15	2.9	15	89	3	61	4	15	0	79	0.89
37931517--37931586	20	3.3	21	77	18	74	4	17	1	77	1.01
37934196--37934292	30	3.2	30	71	8	90	27	15	28	27	1.96
37951628--37951653	3	8.7	3	100	0	52	34	0	0	65	0.93
37953124--37953176	23	2.3	23	78	12	56	58	1	3	35	1.27
37958978--37959023	22	2.0	23	87	4	67	30	6	32	30	1.83
37958985--37959034	23	2.2	22	82	3	55	30	4	32	34	1.76
37959637--37959778	40	3.6	40	97	0	252	50	2	16	30	1.59
37962195--37962242	23	2.0	25	84	8	64	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37963719--37963787	19	3.7	19	77	11	72	69	1	2	26	1.11
37963719--37963813	18	5.1	18	72	20	70	69	1	3	26	1.10
37963737--37963814	9	8.6	9	75	15	54	69	1	2	26	1.09
37966340--37966381	19	2.2	19	83	8	50	40	2	19	38	1.64
37969600--37969653	17	3.2	16	84	10	72	44	20	5	29	1.74
37970314--37970357	18	2.4	18	80	0	52	47	20	4	27	1.69
37970734--37970764	15	2.1	15	100	0	62	67	6	6	19	1.35
37976675--37976715	13	3.1	14	82	10	59	19	14	14	51	1.77
37977448--37977528	41	2.0	41	100	0	162	22	17	24	35	1.95
37977691--37977796	49	2.1	49	91	1	167	44	4	25	25	1.73
37978197--37978302	32	3.3	34	79	14	100	48	18	3	29	1.66
37978243--37978311	32	2.2	31	87	7	95	46	20	4	28	1.70
37980971--37981005	17	2.0	18	88	5	54	11	25	45	17	1.81
37985351--37985396	23	2.0	23	84	12	60	45	10	6	36	1.65
37985358--37985402	23	2.0	23	82	8	56	40	13	8	37	1.76
37992223--37992264	19	2.2	19	100	0	84	33	21	4	40	1.74
37998480--37998543	18	3.6	18	80	0	74	31	15	12	40	1.85
37999741--37999771	13	2.4	13	100	0	62	0	29	0	70	0.87
38007439--38007629	64	3.0	63	86	1	229	31	12	20	35	1.90
38016338--38016370	3	11.0	3	100	0	66	33	0	0	66	0.92
38016678--38016807	64	2.0	64	86	0	179	33	14	19	33	1.92
38018660--38018743	28	3.1	27	75	10	82	64	1	3	30	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38021286--38021348	30	2.1	30	100	0	126	52	3	6	38	1.43
38026452--38026512	29	2.2	27	80	8	68	19	14	6	59	1.58
38026453--38026496	14	3.1	14	80	6	52	18	13	4	63	1.46
38026473--38026532	28	2.1	28	84	0	75	25	20	5	50	1.68
38033583--38033637	18	2.9	19	81	10	60	52	5	0	41	1.24
38033583--38033632	19	2.5	20	81	12	59	54	6	0	40	1.25
38036364--38036418	23	2.3	25	75	12	62	29	7	10	52	1.63
38036586--38036679	24	3.5	25	75	18	82	34	8	5	52	1.55
38036614--38036677	31	2.0	32	81	3	76	37	6	4	51	1.48
38036594--38036682	29	3.1	28	72	13	83	33	7	4	53	1.50
38036991--38037032	20	2.0	21	86	13	61	30	4	4	59	1.39
38036971--38037032	22	2.7	23	82	9	65	30	4	4	59	1.39
38039112--38039166	23	2.3	25	75	12	62	29	7	10	52	1.63
38039335--38039428	24	3.5	25	75	18	82	34	8	5	52	1.55
38039363--38039426	31	2.0	32	81	3	76	37	6	4	51	1.48
38039343--38039431	29	3.1	28	72	13	83	33	7	4	53	1.50
38039743--38039782	19	2.0	21	86	13	59	30	5	5	60	1.40
38039742--38039782	20	2.0	20	86	9	57	29	4	4	60	1.38
38047986--38048608	311	2.0	311	96	0	1156	33	18	20	26	1.96
38051285--38051367	43	1.9	43	92	0	139	49	13	21	15	1.79
38052189--38052399	73	2.9	73	85	2	282	28	18	22	30	1.97
38052262--38052647	161	2.4	161	81	6	460	30	17	20	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38052342--38052560	75	2.7	88	76	14	220	30	19	21	28	1.98
38052552--38052586	14	2.5	14	95	0	61	25	11	0	62	1.28
38052477--38052800	89	3.7	88	75	10	288	29	15	17	37	1.91
38052925--38052973	21	2.3	21	82	0	62	30	12	28	28	1.93
38052988--38053087	44	2.3	44	87	3	157	42	20	16	22	1.89
38054828--38054891	31	2.0	32	81	3	76	37	6	4	51	1.48
38054808--38054896	29	3.1	28	72	13	83	33	7	4	53	1.50
38066306--38066384	29	2.5	31	76	12	81	37	7	10	44	1.67
38068596--38068647	20	2.6	20	100	0	104	36	7	0	55	1.29
38071957--38072132	50	3.5	49	83	4	185	25	17	27	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318