genome.fa.s5.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  210  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66505919--66506075	27	5.8	27	82	2	172	26	22	10	40	1.86
66505919--66506076	54	2.9	54	83	3	203	26	22	10	40	1.86
66506000--66506328	27	12.1	27	76	7	175	37	18	9	34	1.83
66505892--66506086	81	2.4	81	73	1	185	29	23	9	37	1.87
66506068--66506246	27	6.7	26	78	8	180	41	18	8	30	1.80
66506068--66506301	81	2.9	81	84	6	287	41	18	8	30	1.81
66506285--66506336	27	1.9	27	88	7	79	40	11	11	36	1.78
66506390--66506480	27	3.4	27	87	6	123	34	19	26	19	1.96
66507724--66507780	9	5.9	9	73	15	51	35	8	21	35	1.84
66507722--66507792	20	3.5	20	94	0	124	35	11	21	32	1.89
66507733--66507787	11	5.4	11	70	16	55	36	12	20	30	1.90
66507839--66508007	25	7.0	24	89	6	229	28	21	21	28	1.99
66507838--66508007	49	3.5	47	85	8	227	28	21	21	28	1.99
66508199--66508262	31	2.1	31	93	0	110	37	15	23	23	1.93
66509315--66509346	12	2.6	13	90	9	50	50	25	6	18	1.70
66513813--66513906	27	3.5	27	85	4	136	40	24	7	27	1.82
66513828--66514009	54	3.3	53	75	7	150	40	18	9	31	1.83
66513816--66513995	27	6.6	27	73	9	114	39	19	10	31	1.85
66514047--66514135	27	3.3	27	84	3	99	37	17	24	20	1.94
66514943--66515117	26	6.8	26	89	0	255	26	21	22	29	1.99
66515262--66515353	42	2.2	42	94	0	157	29	13	21	35	1.91
66515377--66515584	31	6.4	31	68	20	113	30	17	24	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66515395--66515662	133	2.0	133	97	0	509	30	18	23	27	1.98
66517438--66517594	27	5.8	27	83	2	181	27	22	9	40	1.85
66517519--66517847	27	12.1	27	75	7	175	38	18	8	34	1.82
66517411--66517605	81	2.4	81	76	1	194	29	23	9	37	1.86
66517425--66517605	54	3.4	53	80	4	175	30	22	8	37	1.85
66517587--66517765	27	6.7	26	78	8	180	41	18	8	30	1.80
66517587--66517820	81	2.9	81	84	5	294	42	18	8	30	1.80
66517804--66517855	27	1.9	27	88	7	79	40	11	11	36	1.78
66517896--66517973	27	2.9	27	77	11	88	35	21	20	21	1.96
66519216--66519272	9	5.9	9	73	15	51	35	8	21	35	1.84
66519214--66519284	20	3.5	20	94	0	124	35	11	21	32	1.89
66519225--66519279	11	5.4	11	70	16	55	36	12	20	30	1.90
66519331--66519499	25	7.0	24	89	6	229	28	21	21	28	1.99
66519330--66519499	49	3.5	47	85	8	227	28	21	21	28	1.99
66519691--66519754	31	2.1	31	93	0	110	37	15	23	23	1.93
66520807--66520838	12	2.6	13	90	9	50	50	25	6	18	1.70
66525633--66525810	27	6.6	27	82	3	196	27	15	27	29	1.96
66525634--66525789	82	1.9	81	86	3	224	27	15	27	29	1.96
66525630--66525810	82	2.2	81	81	2	220	27	15	27	29	1.96
66533099--66533161	32	2.0	32	90	0	99	25	17	20	36	1.94
66533630--66533665	17	2.2	16	90	5	54	16	11	25	47	1.79
66535485--66535653	48	3.5	48	75	6	180	28	17	27	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66535472--66535707	96	2.5	96	85	1	303	28	17	26	26	1.98
66542089--66542264	50	3.5	49	76	13	178	26	17	24	31	1.97
66542089--66542270	101	1.8	101	91	0	301	26	17	24	31	1.97
66547170--66547397	48	4.8	47	71	6	154	29	18	28	24	1.98
66547160--66547394	96	2.4	96	85	2	303	28	17	28	25	1.97
66556412--66556491	39	2.1	39	97	0	151	43	11	20	25	1.84
66557191--66557282	40	2.4	38	88	3	139	25	15	23	35	1.94
66557269--66557341	28	2.6	28	84	0	101	24	13	28	32	1.94
66565938--66566028	41	2.2	41	88	0	128	21	28	21	27	1.99
66566024--66566115	25	3.7	25	73	5	87	29	22	21	26	1.99
66570870--66571003	56	2.4	56	85	0	187	35	22	12	29	1.91
66574009--66574039	15	2.1	15	93	0	53	19	0	25	54	1.44
66576128--66576181	27	2.0	27	85	7	74	29	18	20	31	1.96
66589915--66589963	21	2.5	20	90	9	82	51	4	20	24	1.65
66596171--66596199	14	2.1	14	100	0	58	17	41	6	34	1.76
66599430--66599469	19	2.0	20	85	4	55	35	27	0	37	1.57
66599500--66599529	10	3.1	10	95	4	53	60	20	0	20	1.37
66602590--66602851	46	5.6	47	80	11	265	22	30	19	27	1.98
66608778--66608812	16	2.3	15	90	5	52	62	2	2	31	1.24
66608927--66608986	23	2.9	20	70	15	59	56	5	6	31	1.47
66608964--66609034	25	3.0	23	78	9	81	57	5	5	30	1.45
66608942--66609047	48	2.2	50	81	8	121	58	5	6	29	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66609043--66609088	14	3.2	15	80	17	53	56	2	6	34	1.37
66609064--66609182	25	5.0	25	67	19	65	54	3	6	35	1.43
66609133--66609184	24	2.2	23	83	10	61	59	0	3	36	1.16
66609673--66609758	30	2.9	30	96	0	154	17	5	50	26	1.69
66609693--66609748	18	3.4	18	68	27	61	19	7	48	25	1.74
66610398--66610841	87	4.9	87	75	12	207	37	18	15	27	1.92
66610583--66610949	91	4.1	91	82	6	424	38	18	16	26	1.92
66610753--66610785	14	2.4	14	94	0	57	63	6	12	18	1.48
66610596--66610930	183	1.8	180	85	4	476	35	19	16	28	1.93
66610867--66611365	75	6.8	75	85	6	664	32	19	17	30	1.95
66610867--66611365	148	3.4	147	87	3	713	32	19	17	30	1.95
66611334--66611397	33	2.0	32	90	9	103	29	26	18	25	1.98
66611263--66611468	105	2.0	106	91	6	339	32	21	16	29	1.96
66611367--66611560	71	2.7	70	86	5	246	33	19	16	30	1.94
66611734--66611778	13	3.4	13	87	6	72	68	6	11	13	1.37
66611556--66611850	100	3.0	101	90	3	445	40	18	17	24	1.91
66611758--66611923	73	2.3	74	90	1	253	33	20	17	28	1.95
66618906--66618963	20	2.7	21	84	10	73	43	0	6	50	1.29
66618932--66618997	19	3.4	19	83	10	80	37	0	4	57	1.19
66618928--66619000	20	3.5	21	80	14	89	38	0	4	57	1.18
66619000--66619057	1	58.0	1	96	0	107	1	0	0	98	0.13
66618966--66619023	19	3.3	19	81	13	54	22	0	1	75	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66618994--66619058	15	4.2	16	94	4	107	6	0	0	93	0.33
66619141--66619175	16	2.3	15	90	5	52	31	2	2	62	1.24
66626216--66626381	73	2.3	73	89	0	242	28	16	20	34	1.94
66626361--66626405	13	3.4	13	87	6	72	13	11	6	68	1.37
66626292--66626574	97	2.9	100	86	4	396	24	16	19	39	1.92
66626592--66626960	73	5.0	73	86	5	485	30	17	20	31	1.96
66626591--66626938	147	2.4	148	92	1	576	31	16	21	30	1.96
66626867--66627408	183	3.0	179	80	8	577	27	17	18	37	1.93
66626887--66627371	90	5.4	89	80	10	415	29	16	18	35	1.93
66638395--66638457	26	2.4	25	84	5	72	58	6	4	30	1.43
66638422--66638463	22	1.9	22	90	0	66	61	7	2	28	1.35
66638394--66638479	26	3.5	24	75	15	68	59	5	5	29	1.44
66638473--66638537	14	4.6	14	75	19	55	56	1	4	36	1.29
66638481--66638612	25	5.6	25	74	12	100	55	3	6	35	1.40
66639949--66640036	13	6.8	13	72	5	79	35	6	23	34	1.82
66639962--66640038	26	3.0	26	84	0	109	36	6	23	33	1.81
66640245--66640277	17	1.9	17	88	11	50	48	0	0	51	1.00
66641071--66641147	26	3.0	26	86	5	111	66	27	2	3	1.22
66641759--66641786	10	2.8	10	100	0	56	46	10	0	42	1.38
66651843--66652085	73	3.4	72	88	6	338	31	16	20	31	1.95
66652036--66652204	87	1.9	86	81	9	200	27	17	18	36	1.93
66652141--66652328	74	2.5	73	88	5	263	30	16	22	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66652347--66652374	14	2.0	14	100	0	56	14	21	7	57	1.61
66651909--66652557	238	2.8	234	90	4	1004	29	17	20	32	1.95
66652361--66652557	73	2.7	73	85	4	256	30	15	21	32	1.94
66652434--66652965	127	4.0	126	77	14	511	28	16	20	34	1.94
66652580--66652996	205	2.0	211	84	11	557	27	16	22	33	1.96
66652688--66652996	72	4.2	72	85	6	406	27	17	21	33	1.95
66653026--66653147	57	2.1	59	79	8	135	25	17	23	33	1.96
66653769--66653832	30	2.1	30	94	0	110	25	48	3	23	1.65
66654035--66654067	16	2.1	16	100	0	66	24	6	33	36	1.80
66654330--66654449	21	5.6	21	68	20	63	36	4	3	55	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318