genome.fa.s5.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  153  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47708026--47708250	40	5.7	40	82	8	255	24	21	27	25	1.99
47716073--47716297	40	5.7	40	81	8	237	24	21	27	26	1.99
47720118--47720166	25	2.0	25	91	0	80	20	26	20	32	1.97
47720120--47720187	25	2.7	25	81	6	75	20	26	23	29	1.99
47731201--47731286	24	3.6	23	78	7	91	37	23	24	15	1.93
47731326--47731397	26	2.8	26	74	2	74	44	23	15	16	1.86
47739256--47739444	25	7.6	25	65	13	77	20	26	18	34	1.96
47739318--47739386	24	2.8	23	76	10	66	20	26	20	33	1.97
47743778--47743824	19	2.3	20	82	14	60	34	2	4	59	1.29
47744486--47744522	17	2.2	17	90	0	56	48	0	2	48	1.15
47748936--47749023	45	2.0	45	93	0	149	25	13	25	36	1.92
47751342--47751438	27	3.6	27	83	5	90	25	26	15	31	1.96
47751375--47751441	27	2.5	27	90	0	98	26	23	11	37	1.90
47755709--47755806	31	3.1	30	67	25	76	18	2	32	46	1.60
47756834--47756949	58	2.0	58	100	0	232	32	12	13	41	1.82
47759119--47759157	20	1.9	21	84	5	53	35	7	0	56	1.28
47761252--47761323	35	2.1	35	94	0	126	19	12	18	50	1.78
47777805--47777850	14	3.1	14	80	17	56	39	0	2	58	1.10
47778831--47779194	46	8.0	47	90	3	460	20	24	15	38	1.92
47778831--47779194	92	4.0	92	89	2	509	20	24	15	38	1.92
47778831--47779194	182	2.0	184	86	2	509	20	24	15	38	1.92
47779027--47779096	21	3.2	21	64	28	56	21	25	15	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47778969--47779225	136	1.9	133	84	7	347	23	27	15	33	1.95
47781332--47781371	11	3.5	11	83	12	53	65	2	0	32	1.06
47791916--47791994	25	3.3	25	66	16	76	34	5	29	31	1.79
47791891--47792185	47	6.3	47	90	0	455	33	8	29	28	1.87
47798221--47798357	68	2.0	68	98	1	267	25	17	11	45	1.82
47800163--47800201	20	2.0	20	85	10	53	30	15	7	46	1.74
47805393--47805446	27	2.0	28	89	10	85	74	5	1	18	1.11
47805459--47805507	19	2.6	18	87	9	62	55	4	0	40	1.19
47807620--47807722	51	2.0	51	100	0	206	42	13	8	34	1.75
47812559--47812601	16	2.8	16	85	3	61	27	0	72	0	0.85
47814757--47814791	14	2.3	16	90	9	56	20	28	5	45	1.73
47820665--47820712	25	1.9	24	84	16	62	43	18	4	33	1.69
47820940--47821028	23	3.9	23	77	12	103	39	21	23	15	1.92
47829224--47829354	43	3.0	42	82	8	149	28	14	24	32	1.94
47830909--47830938	12	2.5	12	94	0	51	26	53	20	0	1.46
47846120--47846146	13	2.1	13	100	0	54	22	40	7	29	1.81
47854879--47854921	19	2.3	19	81	14	54	44	0	23	32	1.54
47855350--47855668	46	6.7	46	75	10	238	27	18	30	23	1.98
47855536--47855667	49	2.7	50	76	8	144	26	21	31	21	1.98
47875553--47875597	22	2.0	22	91	0	72	35	8	22	33	1.85
47878742--47878797	28	2.0	28	100	0	112	50	7	21	21	1.72
47882443--47882490	22	2.1	22	85	11	62	45	0	25	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47882757--47882833	28	2.8	28	72	14	79	41	0	23	35	1.55
47882962--47883058	38	2.5	39	73	10	99	21	19	29	28	1.98
47889986--47890029	16	2.7	16	82	3	52	22	13	2	61	1.43
47892328--47892481	57	2.7	58	80	8	165	31	20	15	32	1.94
47897110--47897240	47	2.8	47	85	0	172	22	12	29	35	1.91
47901528--47901569	22	1.9	22	85	0	57	45	14	7	33	1.72
47903036--47903349	47	6.7	45	69	13	152	28	19	26	25	1.98
47902988--47903292	94	3.3	93	77	8	300	28	19	27	24	1.98
47903221--47903342	49	2.5	49	83	7	151	29	14	26	29	1.95
47903529--47903568	20	2.0	20	100	0	80	35	10	25	30	1.88
47910522--47910840	47	6.8	45	74	9	219	27	18	28	25	1.98
47910576--47910886	140	2.2	141	84	7	382	26	19	28	25	1.99
47923316--47923446	47	2.8	47	85	0	172	22	12	29	35	1.90
47927735--47927776	22	1.9	22	90	0	66	45	11	7	35	1.69
47929187--47929412	47	4.8	46	73	15	162	26	19	30	23	1.98
47929243--47929556	47	6.6	47	76	12	252	28	18	28	25	1.98
47929289--47929554	139	1.9	141	83	6	351	27	18	28	25	1.98
47936658--47937024	47	7.8	45	74	9	220	27	18	29	24	1.98
47936712--47937024	47	6.6	47	75	13	225	26	19	29	24	1.98
47939650--47939688	18	2.1	19	85	9	53	43	15	0	41	1.46
47948944--47949052	41	2.7	40	76	12	105	23	18	20	37	1.94
47967215--47967313	41	2.5	40	81	6	110	22	23	23	31	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47970030--47970064	17	2.1	17	94	0	61	48	5	2	42	1.41
47979365--47979417	20	2.7	20	91	2	81	22	32	13	32	1.92
47986003--47986089	46	1.9	46	83	6	115	25	31	19	24	1.98
47991681--47991793	45	2.5	44	84	11	158	25	30	18	24	1.98
47999914--47999950	14	2.6	15	83	12	51	75	0	5	18	0.99
48000295--48000319	13	1.9	13	100	0	50	12	32	32	24	1.91
48010525--48010549	13	1.9	13	100	0	50	32	32	24	12	1.91
48013889--48014042	29	5.3	29	92	0	238	25	12	30	31	1.93
48025619--48025650	13	2.3	15	89	10	50	68	0	9	21	1.17
48028095--48028218	28	4.3	29	85	3	171	25	12	30	31	1.92
48028100--48028211	57	2.0	56	89	1	170	25	12	31	30	1.93
48035743--48035835	27	3.4	27	77	0	87	37	24	6	31	1.81
48035839--48035943	27	3.9	27	82	9	101	40	16	17	25	1.89
48035850--48035970	27	4.5	27	85	2	145	37	15	20	26	1.93
48035850--48035967	53	2.2	54	84	3	150	37	15	21	26	1.93
48036113--48036144	16	2.0	16	93	0	55	31	18	15	34	1.93
48036327--48036374	20	2.4	20	78	0	60	12	18	31	37	1.88
48036589--48036652	25	2.6	25	84	0	83	18	21	12	46	1.82
48036649--48036682	18	1.9	17	88	5	50	17	11	17	52	1.73
48056871--48056910	13	3.1	13	96	0	71	15	30	37	17	1.90
48058935--48058979	21	2.1	21	100	0	90	48	28	4	17	1.66
48080516--48080562	17	2.5	20	73	23	55	34	34	2	29	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48080525--48080559	17	2.1	17	94	0	61	34	34	0	31	1.58
48083269--48083450	40	4.6	40	93	2	287	22	22	25	29	1.99
48099120--48099204	25	3.4	23	72	13	62	31	16	25	25	1.96
48099217--48099389	74	2.3	74	82	9	192	33	19	26	20	1.97
48099257--48099412	49	3.1	52	74	12	128	34	19	26	19	1.96
48099257--48099586	25	13.2	24	72	8	178	36	18	26	19	1.95
48099370--48099558	75	2.5	75	92	1	308	36	17	27	18	1.93
48106607--48106638	8	4.0	8	100	0	64	37	12	37	12	1.81
48108869--48108910	19	2.2	19	87	8	59	69	2	4	23	1.20
48112379--48113202	422	2.0	423	92	0	1362	35	15	17	32	1.91
48114801--48114918	27	4.4	27	85	0	119	22	25	11	40	1.88
48129696--48129752	11	5.5	10	73	22	55	77	1	17	3	1.00
48129696--48129752	5	11.0	5	77	17	55	77	1	17	3	1.00
48129696--48129752	16	3.7	14	80	17	60	77	1	17	3	1.00
48129857--48129895	18	2.1	19	85	4	53	66	0	23	10	1.22
48131419--48131468	25	2.0	25	100	0	100	24	28	20	28	1.99
48131489--48131574	30	2.9	30	77	5	86	27	24	17	30	1.97
48142577--48142614	14	2.9	14	92	7	62	55	15	5	23	1.61
48145234--48145306	37	2.0	37	88	0	110	46	10	20	21	1.81
48145622--48145677	23	2.5	23	80	11	71	55	7	0	37	1.27
48149065--48149121	15	3.9	15	72	22	59	43	1	0	54	1.10
48149065--48149125	22	2.8	21	78	7	68	40	1	0	57	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48149515--48149553	18	2.2	18	86	9	53	61	12	0	25	1.31
48149562--48149630	22	3.2	22	74	17	81	50	7	4	37	1.50
48149555--48149639	43	2.0	43	97	0	161	54	5	3	36	1.42
48150530--48150574	19	2.3	20	85	7	58	64	4	0	31	1.13
48150602--48150645	20	2.3	19	84	4	52	63	0	2	34	1.07
48150741--48150797	30	1.9	30	89	7	89	40	0	1	57	1.09
48150849--48150886	15	2.5	16	87	8	53	26	0	5	68	1.11
48151074--48151129	29	1.9	29	85	0	76	53	14	1	30	1.51
48151432--48151486	18	2.9	18	84	10	58	80	7	3	9	1.02
48151452--48151486	12	2.8	12	86	4	52	82	5	0	11	0.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318