genome.fa.s5.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  91  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30503192--30503276	33	2.6	33	85	8	106	50	21	16	11	1.76
30503583--30503623	13	3.1	14	80	20	52	53	0	2	43	1.13
30505318--30505357	19	2.1	19	86	9	55	72	0	0	27	0.85
30508292--30508348	30	1.9	30	85	7	80	49	1	0	49	1.11
30508300--30508396	33	2.8	33	73	21	85	50	2	1	46	1.20
30510386--30510436	24	2.1	25	85	3	68	56	7	0	35	1.28
30510509--30510548	21	1.9	21	84	0	53	57	5	2	35	1.34
30512630--30512656	4	6.8	4	100	0	54	51	0	0	48	1.00
30513188--30513249	31	2.0	31	87	0	88	43	3	4	48	1.40
30515535--30515596	31	2.0	31	96	0	115	38	11	0	50	1.39
30517333--30517377	18	2.4	19	85	11	65	46	0	0	53	1.00
30524485--30524701	44	4.9	44	85	1	265	30	19	22	28	1.98
30526120--30526296	49	3.8	45	82	12	191	31	26	14	28	1.95
30526155--30526380	49	4.7	49	83	8	252	32	26	13	27	1.94
30526164--30526380	95	2.3	93	82	10	242	31	26	13	27	1.94
30526402--30526519	31	3.8	31	88	6	177	26	27	19	27	1.99
30526501--30526623	50	2.4	51	94	2	221	25	22	16	35	1.94
30532396--30532479	44	1.9	44	95	0	150	28	17	22	30	1.97
30532498--30532681	44	4.2	44	79	0	188	33	19	17	29	1.95
30533636--30533668	17	2.0	17	94	5	59	36	15	0	48	1.45
30533949--30534358	46	9.0	46	86	1	493	20	23	14	41	1.89
30533954--30534356	91	4.4	92	88	1	506	20	23	14	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30533949--30534357	137	3.0	138	84	1	518	21	23	14	41	1.89
30534286--30534357	21	3.2	21	66	27	58	25	23	11	40	1.87
30537620--30537670	3	16.7	3	95	4	93	31	1	0	66	1.03
30537761--30537797	4	9.2	4	87	0	56	24	0	5	70	1.08
30541014--30541072	30	2.0	30	93	0	100	40	25	1	32	1.66
30541521--30541603	41	2.0	41	95	0	148	36	13	10	39	1.79
30556073--30556394	107	2.7	128	75	20	434	41	5	9	42	1.62
30558663--30558843	65	2.8	64	94	2	310	39	14	11	34	1.83
30561805--30561841	17	2.1	19	90	10	60	72	5	5	16	1.21
30568492--30568539	16	3.1	15	79	11	53	58	8	4	29	1.46
30569259--30569283	8	3.1	8	100	0	50	88	0	0	12	0.53
30569666--30569699	4	8.5	4	90	9	52	79	0	0	20	0.73
30571267--30571309	20	2.2	20	91	0	68	58	11	11	18	1.63
30576417--30576504	31	2.9	30	91	3	140	34	11	10	44	1.74
30576538--30576669	65	2.0	65	83	2	167	40	18	18	23	1.91
30577931--30578011	42	1.9	42	85	5	110	37	2	9	50	1.49
30578314--30578343	13	2.3	13	94	0	51	90	0	10	0	0.47
30583453--30583500	23	2.1	23	100	0	96	29	25	12	33	1.92
30591528--30591581	23	2.3	23	93	3	90	29	3	16	50	1.63
30594353--30594518	53	3.1	53	87	6	212	26	15	28	30	1.96
30597841--30597887	23	2.0	23	100	0	94	34	12	4	48	1.61
30597888--30598078	104	1.8	105	87	1	285	47	10	14	27	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30605957--30605997	21	2.0	21	90	0	64	26	21	31	19	1.97
30608839--30608883	21	2.1	21	88	12	65	73	4	8	13	1.23
30613530--30613604	38	2.0	38	94	0	132	20	12	10	57	1.64
30613704--30613732	14	2.1	14	100	0	58	13	0	24	62	1.32
30615067--30615100	13	2.4	15	90	9	54	52	14	8	23	1.69
30620844--30620891	25	2.0	23	84	8	60	31	6	0	62	1.20
30621830--30621868	14	2.7	14	84	15	53	43	0	0	56	0.99
30623699--30623904	105	2.0	105	90	1	324	39	17	11	31	1.85
30625126--30625165	5	7.8	5	83	5	53	20	2	2	75	1.04
30625126--30625165	16	2.6	15	88	4	53	20	2	2	75	1.04
30625610--30625654	22	2.0	22	95	0	81	35	20	17	26	1.95
30627599--30627635	18	2.1	18	100	0	74	35	16	21	27	1.94
30650473--30650504	15	2.1	15	94	0	55	34	3	0	62	1.11
30652855--30652910	11	4.9	11	85	8	67	33	0	1	64	1.04
30655050--30655225	46	3.8	46	87	3	230	42	13	24	19	1.88
30655060--30655230	91	1.9	90	85	3	227	41	14	23	19	1.89
30656609--30656639	15	2.1	15	93	0	53	32	3	0	64	1.09
30656612--30656658	18	2.6	18	82	0	58	25	4	4	65	1.29
30656709--30656770	23	2.6	23	84	5	70	37	6	1	54	1.36
30656735--30656780	20	2.3	20	84	0	56	34	4	2	58	1.30
30656807--30657037	3	76.7	3	69	10	105	28	9	3	58	1.46
30658197--30658431	46	4.9	46	84	9	283	22	24	14	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30658210--30658410	100	2.0	100	89	1	305	22	24	13	38	1.91
30661171--30661279	51	2.1	51	96	1	200	23	20	4	51	1.66
30661187--30661267	26	3.2	26	61	22	62	27	18	4	49	1.68
30663502--30663782	46	5.9	46	87	7	366	22	24	13	39	1.91
30666577--30666625	19	2.6	19	96	0	89	40	16	12	30	1.85
30669171--30669266	21	4.5	21	89	2	129	36	27	22	13	1.92
30669171--30669276	42	2.5	43	84	3	142	35	26	22	15	1.93
30670709--30670744	15	2.3	17	81	18	51	0	30	0	69	0.89
30677026--30677163	21	6.5	21	91	1	204	34	26	24	14	1.94
30678608--30678643	15	2.3	17	81	18	51	0	30	0	69	0.89
30679644--30679922	139	2.0	139	97	0	522	32	21	19	26	1.97
30680219--30680253	18	1.9	18	94	0	61	37	17	28	17	1.92
30681545--30681607	33	1.9	32	84	15	85	55	7	0	36	1.29
30682589--30682645	28	2.0	28	100	0	114	17	21	26	35	1.95
30691261--30691417	38	4.1	38	92	0	260	33	24	21	20	1.97
30696969--30697276	38	8.1	38	91	0	501	31	25	22	20	1.98
30701737--30702054	44	7.2	42	66	14	133	33	20	24	21	1.97
30701670--30702154	88	5.5	88	90	0	718	33	20	24	21	1.97
30701771--30702100	44	7.5	43	67	13	190	33	20	23	21	1.97
30702303--30702425	41	2.9	42	84	4	140	30	21	21	26	1.98
30702726--30702779	19	2.8	19	72	5	56	51	35	3	9	1.52
30703852--30703913	28	2.2	27	81	13	72	27	3	3	66	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30703882--30703923	15	2.8	15	82	7	50	26	2	2	69	1.13
30703987--30704028	22	1.9	22	90	0	66	40	7	0	52	1.29
30703985--30704051	20	3.2	20	82	4	71	37	5	1	55	1.34
30704137--30704218	41	2.0	41	80	4	94	28	9	4	57	1.51
30704078--30704300	3	74.0	3	68	9	87	30	11	2	56	1.48
30705842--30705890	23	2.1	23	82	14	57	42	0	0	57	0.99
30707049--30707092	21	2.1	21	86	0	61	25	18	25	31	1.97
30711055--30711084	15	2.0	15	93	0	51	50	0	10	40	1.36
30714823--30714892	18	3.9	18	81	9	90	18	2	0	78	0.87
30714830--30714894	16	3.9	15	74	20	58	18	3	0	78	0.88
30714822--30714892	27	2.7	25	83	12	88	18	2	0	78	0.86
30714830--30714894	7	8.9	7	73	20	53	18	3	0	78	0.88
30715832--30715864	7	4.7	7	88	11	50	87	0	9	3	0.63
30715839--30715873	16	2.2	16	90	10	54	88	0	11	0	0.51
30716445--30716474	15	2.0	15	93	0	51	50	0	10	40	1.36
30716499--30716530	10	3.3	10	95	4	57	31	6	0	62	1.20
30717324--30717348	7	3.6	7	100	0	50	12	0	0	88	0.53
30718210--30718298	44	2.0	44	100	0	178	22	17	23	35	1.95
30723433--30723469	19	1.9	19	100	0	74	21	13	10	54	1.69
30732889--30733047	43	3.7	43	72	8	117	31	15	23	29	1.95
30733478--30733551	36	2.1	36	100	0	148	41	16	31	10	1.82
30734085--30734221	60	2.3	59	81	8	143	26	24	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30736630--30736664	18	2.0	18	94	5	63	54	0	0	45	0.99
30738787--30738841	28	2.0	28	85	0	74	23	21	9	45	1.80
30739972--30740043	21	3.4	21	75	3	74	19	37	23	19	1.94
30740210--30740259	21	2.5	20	80	3	64	24	44	16	16	1.86
30741191--30741688	46	10.8	46	90	1	683	22	24	13	40	1.89
30741191--30741674	139	3.5	139	92	0	738	21	23	13	40	1.89
30744569--30744612	22	2.0	23	81	4	54	34	20	0	45	1.51
30757252--30757321	30	2.3	30	77	0	77	24	21	12	41	1.88
30767438--30767476	19	2.0	20	85	14	55	61	0	5	33	1.18
30769324--30769386	30	2.2	28	80	8	65	41	0	1	57	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318