genome.fa.s5.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  125  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38963408--38963449	19	2.2	20	82	4	50	45	0	0	54	0.99
38965721--38965896	62	2.8	62	81	4	210	30	26	16	26	1.97
38965721--38965909	63	3.0	62	80	3	209	30	25	16	26	1.97
38966496--38966594	47	2.1	47	83	3	119	21	20	23	35	1.96
38966658--38966724	18	3.6	18	73	11	53	40	5	13	40	1.69
38966648--38966798	39	3.9	39	85	1	205	38	11	13	36	1.81
38966679--38966735	18	2.8	20	69	15	55	42	8	12	36	1.74
38967976--38968034	29	2.0	30	86	3	84	32	6	13	47	1.69
38970335--38970391	29	2.0	29	92	0	96	45	29	0	24	1.53
39007899--39008085	48	3.9	48	91	2	284	24	20	27	27	1.99
39007899--39008083	98	1.9	97	89	2	291	24	20	27	27	1.99
39011249--39011285	19	1.9	19	94	0	65	5	0	18	75	0.99
39012387--39012447	30	2.0	30	83	0	77	14	26	32	26	1.95
39013253--39013282	12	2.6	11	94	5	51	6	10	0	83	0.81
39014356--39014416	22	2.7	22	80	7	70	73	3	11	11	1.20
39014407--39014436	6	5.0	6	100	0	60	83	0	0	16	0.65
39014418--39014480	33	1.9	32	87	9	92	73	0	1	25	0.93
39014412--39014486	39	1.9	37	82	17	91	72	0	2	25	0.98
39014514--39014565	22	2.5	20	85	11	77	75	1	0	23	0.91
39014692--39014753	30	2.0	31	84	3	81	14	37	29	19	1.91
39017634--39017666	12	2.6	13	85	9	50	9	45	0	45	1.35
39018731--39018795	28	2.3	28	94	0	112	33	27	7	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39018911--39018991	28	2.9	28	86	1	108	22	20	20	35	1.96
39018914--39019002	28	3.1	28	83	1	106	23	22	19	34	1.96
39019445--39019485	18	2.3	18	86	0	55	24	2	4	68	1.22
39021539--39021618	26	3.2	26	81	13	112	36	25	8	30	1.86
39023730--39023803	27	2.6	28	76	20	73	45	32	4	17	1.67
39029877--39029931	26	2.1	26	93	0	92	36	23	5	34	1.78
39030267--39030462	106	1.8	106	96	0	365	37	10	13	38	1.80
39031554--39031611	24	2.4	24	85	5	73	48	1	0	50	1.11
39034547--39034614	24	2.9	23	85	14	95	4	5	20	69	1.28
39035326--39035386	30	2.0	30	90	6	97	42	27	9	19	1.83
39035368--39035732	79	4.5	79	74	13	287	36	18	15	29	1.92
39035408--39035569	88	1.8	88	82	2	209	38	18	16	27	1.92
39035735--39035761	14	1.9	14	100	0	54	62	7	14	14	1.51
39035649--39035836	92	2.1	90	85	6	245	35	18	20	26	1.95
39035745--39035913	76	2.2	76	86	4	243	33	20	18	28	1.96
39035570--39038184	147	16.9	164	71	18	705	33	21	16	28	1.95
39035365--39035913	244	2.2	243	84	5	687	35	18	16	28	1.93
39035893--39035927	14	2.5	14	90	0	52	57	5	20	17	1.60
39035823--39036155	87	3.8	87	86	4	443	34	21	18	25	1.96
39036303--39036589	72	3.8	76	80	7	298	34	19	15	29	1.93
39036303--39036752	72	5.8	72	71	16	287	35	20	16	27	1.94
39036576--39036603	14	2.0	14	100	0	56	57	7	21	14	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39036497--39036679	89	2.1	87	84	8	244	36	20	18	25	1.95
39036585--39036752	73	2.3	73	87	5	248	35	21	18	24	1.95
39036303--39038815	218	11.5	227	70	17	762	33	21	16	28	1.95
39036733--39036766	14	2.5	14	95	4	61	58	8	14	17	1.61
39036429--39038184	147	11.9	160	74	16	866	33	21	16	28	1.95
39036660--39036843	88	2.1	87	85	7	241	36	21	16	25	1.94
39036786--39036985	73	2.8	71	84	2	256	33	21	14	31	1.93
39036977--39037117	71	2.0	73	91	2	232	38	24	15	21	1.92
39037274--39038189	72	12.6	72	85	3	1197	32	21	16	29	1.95
39037269--39038189	147	6.3	144	86	3	1229	32	21	16	29	1.95
39037269--39038832	293	5.4	287	83	8	1637	33	20	16	29	1.94
39038081--39038311	127	1.8	127	85	2	331	34	23	14	27	1.94
39038207--39038832	72	8.6	72	74	14	466	33	20	15	30	1.94
39038273--39038659	206	1.9	206	85	6	548	33	20	15	30	1.93
39038479--39038818	75	4.5	76	84	7	417	32	20	15	31	1.94
39037931--39038739	282	2.9	268	85	6	1000	33	21	16	29	1.95
39038519--39038836	147	2.1	148	83	8	398	35	18	15	30	1.92
39038479--39038818	78	4.5	74	84	7	411	32	20	15	31	1.94
39038836--39039010	70	2.5	70	85	4	212	33	22	14	28	1.94
39047325--39047360	12	3.0	12	95	0	63	41	5	25	27	1.77
39048969--39049022	27	2.0	28	82	10	67	59	1	5	33	1.31
39049861--39049922	24	2.6	25	92	5	101	4	4	22	67	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39051869--39051957	37	2.4	37	98	0	169	44	12	2	40	1.54
39062271--39062311	20	2.0	21	90	4	66	0	26	0	73	0.84
39062707--39062753	19	2.4	21	79	13	55	48	4	0	46	1.21
39062923--39063178	128	2.0	127	84	6	329	37	15	7	38	1.77
39064418--39064560	30	4.9	29	77	7	128	32	20	4	42	1.72
39064411--39064546	60	2.3	60	82	5	159	32	22	4	41	1.73
39065150--39065227	37	2.1	37	85	0	102	16	2	38	42	1.62
39065579--39065607	14	2.0	15	93	6	51	37	0	0	62	0.96
39065642--39065702	26	2.3	27	73	21	67	34	8	4	52	1.53
39065746--39065813	22	3.1	22	75	12	68	33	5	4	55	1.44
39069644--39069847	100	2.0	100	100	0	408	31	8	17	41	1.80
39069945--39070123	46	3.9	46	82	10	220	20	21	30	27	1.98
39069944--39070116	93	1.9	93	93	0	301	20	21	30	27	1.98
39072507--39072535	4	7.2	4	100	0	58	24	24	0	51	1.48
39079951--39080068	44	2.7	44	90	2	175	46	15	22	15	1.83
39082557--39082845	48	6.0	48	92	0	479	36	6	25	32	1.81
39082978--39083124	37	4.0	37	96	0	258	23	19	31	25	1.97
39084842--39085105	76	3.5	75	79	9	295	31	16	20	31	1.95
39084842--39085140	74	4.0	74	79	12	274	30	16	20	32	1.95
39085173--39085450	80	3.5	77	80	6	285	29	16	20	33	1.95
39085667--39085804	30	4.6	29	74	13	93	30	21	4	44	1.71
39087006--39087076	26	2.9	25	72	15	67	33	5	4	56	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39097618--39097728	3	37.7	3	73	3	82	61	1	6	30	1.31
39101135--39101233	30	3.3	30	88	0	162	27	49	5	18	1.68
39101780--39101850	25	2.8	25	82	4	90	35	7	2	54	1.42
39101868--39101930	25	2.5	24	84	7	72	30	4	6	58	1.43
39101794--39101968	79	2.2	78	78	8	176	32	7	4	56	1.46
39101992--39102047	25	2.3	24	79	14	62	37	16	3	42	1.65
39103139--39103178	17	2.6	15	82	17	55	52	0	5	42	1.23
39113675--39113728	18	2.8	18	75	8	54	46	5	0	48	1.25
39116017--39116095	9	9.0	9	73	8	65	21	1	5	72	1.11
39116053--39116106	9	5.9	9	82	4	54	12	3	1	81	0.91
39116877--39116947	22	3.3	22	76	4	72	15	40	18	25	1.89
39121832--39121858	14	1.9	14	100	0	54	59	7	0	33	1.25
39121889--39121965	37	2.1	37	97	0	145	41	10	5	42	1.61
39126517--39126555	20	2.0	20	84	0	51	33	15	17	33	1.92
39127521--39127559	21	2.0	20	85	10	53	48	0	20	30	1.50
39129102--39129156	25	2.2	25	84	12	78	56	5	0	38	1.23
39130970--39131026	25	2.3	25	90	6	89	49	5	19	26	1.69
39131878--39131915	20	1.9	20	88	0	58	10	36	31	21	1.87
39136276--39136503	48	4.9	46	81	5	239	28	17	31	23	1.97
39138631--39138671	3	13.7	3	100	0	82	34	0	0	65	0.93
39139486--39139525	3	13.3	3	100	0	80	35	0	0	65	0.93
39144131--39144191	32	1.9	32	86	6	88	37	11	16	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39144285--39144322	19	2.1	19	90	5	60	55	7	0	36	1.29
39149667--39149718	20	2.5	21	87	3	70	55	5	3	34	1.42
39150750--39150785	18	2.1	17	89	5	54	61	0	0	38	0.96
39151273--39151310	11	3.3	11	86	13	58	31	18	0	50	1.47
39151483--39151543	20	3.2	19	76	19	65	52	4	9	32	1.56
39151491--39151549	19	3.2	19	69	26	54	54	3	10	32	1.51
39159092--39159597	253	2.0	253	100	0	1012	33	13	16	35	1.88
39169358--39169391	16	2.1	16	100	0	68	32	11	11	44	1.77
39173874--39174203	3	110.0	3	69	13	153	62	3	6	27	1.36
39173945--39174086	10	14.2	10	71	17	82	64	3	4	26	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318